Array 1 336491-335681 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDUR01000016.1 Chromobacterium sp. LK11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 336490 28 100.0 32 ............................ TGGCGCCGGCCGGCGAGGGCCAGAAAACGCTA 336430 28 100.0 32 ............................ ATAGCGGAAGGCTTCGCGCCGGGGCATGACGC 336370 28 100.0 32 ............................ TAGTTACGATGTATTCCACAGCAGAAATAAGC 336310 28 100.0 32 ............................ AGGGTGAATTCGATGGCTTCGGTGAACAGGTT 336250 28 100.0 32 ............................ ATTGTGACTCAGTACCATCTGCATTCTTAGTA 336190 28 100.0 33 ............................ AGTCCGGCATGCGCTAAACCCAGAACTGGACAT 336129 28 100.0 32 ............................ GTGAAGGCTATGCGGTGTGCCGGCGGCGGCGC 336069 28 100.0 32 ............................ TGGTATCTCGACCTGCTGATGCATGTGCCGTC 336009 28 100.0 32 ............................ TCGCAGTTGAGCGTCCATTGGAAATTGCCGGC 335949 28 100.0 32 ............................ CGCAAAAAAGTGGAGGCATGTTTTACCGCCTT 335889 28 100.0 32 ............................ TCGCCGGCCAATCCTATCGCGTTCCGCTGCGC 335829 28 100.0 33 ............................ ATGTCCGCCGCCGACCTCTGGGACGACCGCGGG 335768 28 100.0 32 ............................ GCACCGATGATCTCGCCGCGGAGGCCAGACAA 335708 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 100.0 32 GTTCTCTGCCGGATGGGCAGCTTAGAAA # Left flank : ACGCCGCCTTGCAGCGGCTGATGGCCGGCGACTGGCTCAGCGGCATGCGCGACCACATCGCGCTGGCCGCCATCCAGCCGGTGCCGCCGCAGGCGGAGGCCTGGCAGGTACGGCGCAAACAGGCCAAGACCAATCCGGACAAGGAACGCCGCCGGCTGGTGCGGCGGCTGGGCATCAGCGCGGAAGAAGCCGCGCAGCGCTTCCCGGACAGCGCCGCCCGCCGGCTGGCTCTGCCCTTCCTCACCCTCAACAGCGCCAGCACCGGCCAGCGCTATCAGCTGCACATCGAGCAACGCCCGGCCCCGGCCACCCACGGCGGCCGCTTCAACGCCTTCGGCCTCAGCCCCGACGCCACCGTGCCGTGGTTCTAACCCTTTTTTCCAAGCCCCGCCGCCAAGCCTGTTAAATCAAGGGCTTGGCGCGGGGTGGGATAAAAGGGTTTTTATTGGGGAAAGTGACGCTTTCCCCCGCTGGCGCGGGTTTGCGGGGGAAAGGCTCTA # Right flank : GCTCAAGAGGTGAGTGGGGCCTGCCGGCTCTAGTTCACTGCCGGACAGGTAGTTCTCCACAACAAAATCAATGCTATATTAGGCATCTAAATTGACATTGACTAGGGAGAAATTATGGACTTGGTACTTGCCGATGTGGCCGTCAGCGTCACCGAGCTCAAGCGCAATTTTGCCGGCATCATGCGCGAGGCCGCAGGGCATCCGGTGGTGATCCTGAATCACAACCGCCCAGAGGCCTATCTTGTCCCTGCCGCCCAGTACGAACGCATGATGAGCCTGCTTGAAGACATTGAGGACACAAAGCTGGTGCTGGAACGTCGGCAGCAGCCCACCGTCAAGGTGGACCTGGATGAGCTATGAAATTGTTTTCCGGGTGGATGCGGAGAAGGAATGGCGAAAGTTGGACCCATCAATCCGACAGCAGTTTGCCAAGAAACTGAGAGAACGAGCCGAGCATCCGCACAACCCTGCCGCCAAGCTGCATGGCCTGGAAGGCTGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCTGCCGGATGGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCTCTGCCGGATGGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.40,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 347027-345859 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDUR01000016.1 Chromobacterium sp. LK11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 347026 28 100.0 32 ............................ AGAGAGGAAAGAGCGATGGCAAAGTTTGAACC 346966 28 100.0 32 ............................ TACAGCAAGCTGCAATTCGGCGCTCGCGGCGA 346906 28 100.0 32 ............................ TGCCGGCGGCGGGTACTGATTACGCGAAAACG 346846 28 100.0 32 ............................ ATCTGCGACTCGGCATTTTGCTGTGCTCGTGC 346786 28 100.0 32 ............................ CTGACCCCGGCTATCGCCAACGGCCAAGGCCA 346726 28 100.0 32 ............................ TGACGGCAAGGTCGTCTTCGCTGGCGGCGGCG 346666 28 100.0 32 ............................ ACCGATAACACCATCAAAACGGCCAGAGACAA 346606 28 100.0 32 ............................ AAGTTCGTGACAACCGGCAAGCTGTCGTTCTC 346546 28 100.0 32 ............................ ACTTTCTTGGCGGCTTGGGCGCGGATCGCGGC 346486 28 100.0 32 ............................ GGAAGCGCGCTGGGCGGAGTGGAAGCGACTGA 346426 28 100.0 32 ............................ AATGGCACATCAGCCAGAGCCAGGCGGCTATC 346366 28 100.0 32 ............................ ATTTGCTGTTACATCACGAGAATTGGCAGGCT 346306 28 100.0 32 ............................ ACTACGGCTCATTCGTCGATATCGCCCGTTAT 346246 28 100.0 32 ............................ TGCCGGTCCAGCTCGATGCGGTAATACTCCAT 346186 28 100.0 32 ............................ ATGCCAAGCATCTCTCGCAGTACGGGGCAGTC 346126 28 100.0 32 ............................ TCAAAACGCCGTCGGTCACGGCGATCAAAATA 346066 28 100.0 32 ............................ AGTCTGCGTGTCGAAGGTGTCCGCGCGTCTGA 346006 28 100.0 32 ............................ CACTCTCGGCGGACTGTTAACTGGCTAACTGC 345946 28 100.0 32 ............................ TGTGCGATCTGCACTTCGGCCTCTTCGCGGGT 345886 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 20 28 100.0 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : GCTCCAGCTCGTTGGCGCTGAACAAGGGCGTGCCGCCCCCGCCGCAAAAGCCCACCATCACCCCGGCCTTGGCCAGCTCCCGCATCGCCGCCTGCGTCACCGAAGTGCCGGTGCCCAGCAGGATGCAGCTGGTGTTGGCGATGGGGATATTCCAATACAACGAAGCCTTGCCCGCGTCGGTGACATACTCCACCCGCCCGCCGTTGACCAGCACTCGGCAGTGCTGCAAGTAGTAAAGATTGGCGCGCTTGGAATGCAGAATGGTCTTGAGATCGGACGGGGAAAAATCGGACATGGCGATACCTTCGGGATGGAACGCGACAGCGCATTTTGCCATTAGCATGAAGGGTGTGACAGCCGACGAGATCAACCCTTTTTTCCAGCCCCCACATCTTCCCATGTAAAAACAATCACTTAGCCTGTATCTGAAAATTTGGGTCAAAGCCGGAAAAATCACTGAAGTGCCTACGCCATAAGGCGAGGGGGCGGTGTAGACTCTA # Right flank : GCCAAAGCGAGGCAACTCAACTCGCTATGCACACCCAATGTTCTGAAAGCGAGCGCAGCAAGAATCGGGTCGCCCACAGGGTCGCGCCGCCATAGACTTCGGACATTTCAATAATGCGAAGGAGAACGGCATGGCTTGGCAACTGGAAACCCTGGACCCGGCTTTCGTCGAACGGGCGCGACACAAAGGGATAGACGCGCAGGGCCAAGCCGTGCGGCGGATGACGGCCGCCGGCGGCGAACCTTTCCGCGACGCGCTGCGCCGCGCCATCCCGGGAGAGGAACTGATTCTGGCGAGCTACAGCCCATTCCACCAAGTCGGGCCATACCGCGAATATGGGCCGGTTTTCCTGGCGGCAGGGCCACAGCCAGAGCCCCCGCCCGAACTGACATCAATACTGCGCCGTGTCGGCAGCAATCCCTACCTCGGCGACCATGTGGCGCTGCGCGCTTACGACACCGAACAGACCATGCTGGAAGCCGTGCTGCTGCCAACGCATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //