Array 1 45-561 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXKP01000013.1 Salmonella enterica strain BCW_1988 NODE_13_length_123683_cov_3.77626, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 45 29 96.6 32 ...........................T. CTGCCGGTCTGTGCTGTTGTCGTCAATAATCA 106 29 100.0 32 ............................. GCATGTGACAGTCTGATTTTTATAGCGCATGA 167 29 96.6 32 ............................C AATTTAGGGGCCGGAACTCCGGGAAAGGCAGC 228 29 100.0 33 ............................. CAAACACCAAGCTCTTCCGCCGCGCGTTCCTGA 290 29 100.0 32 ............................. TTGCTCTCATTAAAGGGGTTTCCATGTTTGAT 351 29 100.0 32 ............................. CGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 412 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 473 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 534 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 9 29 97.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCTCTTCCGATCTCGTGCCTGTCCAGGACAAATTGCCGATTATTG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGGAGGCTTTTCTACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTAGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16714-17292 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXKP01000013.1 Salmonella enterica strain BCW_1988 NODE_13_length_123683_cov_3.77626, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16714 29 100.0 32 ............................. ACGTTGGCTGAAAACGGTTTTTCGGTCCGCCT 16775 29 100.0 32 ............................. AGAGCGAGCACGTCCGCCGTAAAATTGCCATG 16836 29 100.0 32 ............................. AATATATGGCGCTCACGCGCATGAGCATTCTC 16897 29 100.0 32 ............................. CAGGGCAAATTCATCCGCCGCTGACCACTGGT 16958 29 100.0 32 ............................. GACGCTTACATCTCACCGAGAGATTTTGAGGC 17019 29 100.0 32 ............................. GGAACTGGTTTAGCTATCGCTGCCGGGGCTAT 17080 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGGCC 17141 29 100.0 32 ............................. TCACGAGGGCCTCCTTATTGGGTCGGGCAGGT 17202 29 100.0 32 ............................. GTTGGGTTGCATAGATGACACGCTTATAAATA 17263 29 96.6 0 ............T................ | A [17290] ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATGATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 43650-43438 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXKP01000019.1 Salmonella enterica strain BCW_1988 NODE_19_length_52255_cov_26.7628, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 43649 30 100.0 31 .............................. TACCAGGATGAAAGTCGTAAATGGGCAGAAG 43588 30 100.0 31 .............................. CCACCATAATTCGGGGATGCACAGGCACTAC 43527 30 100.0 31 .............................. GTCAATTTGCTGTGGATGTTCGACCGGCCGG 43466 29 80.0 0 ..................A..-..G..GAC | ========== ====== ====== ====== ============================== =============================== ================== 4 30 95.0 31 AGGTTAATCCCTGCGGGCGGGGATAGGTCG # Left flank : CAGTGGAAGATCTGAATGTGCGGGGAATGATGGCAGCGCCAAAACCGAAGCCAGACCCGGATAACCCCGGTGCGTTCCTGCCGAACGGCGCCAGCCGCAAGCGCGGGCTGAACCGTTCGCTGGCCAGCGCCAGCCTGGGTGAGTTTTTCCGGCAACTTGAGTACAAATGTGCATGGCGCGGCGTCGCGTTGTTGAAAGTTGGCCGCTGGGAGCCGTCCAGCAAGCGCTGCAGCAGCTGTGGCGAGATTAATGAACATTTGACACTGGTAGACCGCCGGTGGCAGTGCCCGGCGTGCGGCGCAGAACATCACCGTGACATTAATGCCGCAGTGAATATTGCTGCCAGGGCAGTGTAACGAATAAAAATAGGGCGCGGCCCGCCCGAATTAACGCCTCCGGACATAGCCAGTGTGCTGTGGTTGAACGAGGAAATTTCCGCAAAAATCTGGTAGAAATTCAGGCGTTATTTTTCGCTATAGATTTCAGCCAGATGCCGCCAG # Right flank : TAAATCATCGTTAAGCTGCGGCACGTAGGGCCGCGGAAACTTAAATTTTAACTTGCAATAAATCCATTGTTTAATGTATTTAATTTAACTACATGATTTAATTGATTTTAATTTACTGCTTCATTATTTTAGACGCTTGGTGATTTTTCCGTAACTATGAAGTTTTTTATGTGTTTTTACTAATTGATTCCATGTTGATTAACCACCCCCATTATCGTAACAATTTATAGCAATGAAATTGTTGGTATTATCCCCCCCCTCCATATTATCACTTAAAGCCACAGCGAATAATTTTCGTAACAAGTTCACAAATGATACACATCCCTTTTTATCGTAACAACATACCGTAAAGCCAATCTTCGTAACATAGAAAACACTTATCGTAACATATTACCACAAGATATTGAAACAACATATATAATTATACGCGCGTATAATTATACATGTTGTGTCGATTATCGTAACAGTTTAAATGTCTATCTTCGTAACACATATTAATG # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGGTTAATCCCTGCGGGCGGGGATAGGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //