Array 1 61-228 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB291123.1 Neisseria sp. oral taxon 020 str. F0370 Scfld396, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 61 36 100.0 30 .................................... TGTTCCAGGCGACTTTACGCATTGTCATTA 127 36 100.0 30 .................................... ATCCATCTTGTCCGACGCCAGCCACAGAGC 193 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTGTAGCTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : AACATGACTGCTTATCTAGTACAGCCCCATGAATTTTCAGACAGCCTTTTATTAAACCAAG # Right flank : TACCCCAACGGGAAATCCTTATCTGATAAGGATTTCCCGTTTTATTTTGCTCAAAAAATGGGATTAAAACAGCAATAATTGGTTTGAATTGACCTTTTTTTCTTGGGTTTTCAGGTCGCCGAGTAGCAATTTCATGGTAGCAAACTGCTTTTCGGTAACCTCCAAACAGCGTACCGACCCCTCTTCTGGCAGGTTGGCGCACAGCCTGTTGTGGTGTTTTTGCAACGAATCGCGCCCTTTTACAATACGGCTGTACACGGATAATTGCAGCATTTGGTAGCCGTCTCTTTGCAGAAAACGGCGGAAATTGTTGGCGGCTTTGCGTTTGGCTGCTGTGGTAACAGGCAGGTCAAAAAACACTATCATACGCATAAATTTGGCCTCACTCATAACGGTACTCTTTCAACGGCAGGACTTGGGGCAGCTTCAGCAGTTTGGCGTTTTTGCCCTGTAGAGCGGGTTGGAAAGATGCAATCATGCGGTCGATGGCGGCCAGGGTG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 59937-60339 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB291165.1 Neisseria sp. oral taxon 020 str. F0370 Scfld985, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 59937 32 100.0 33 ................................ ATCTGGGGCAAGGCGGAGAACTATACCAAGTTT 60002 32 100.0 33 ................................ ATATGCTTCGTCAACTATCAAGACCGAGCCTTC 60067 32 100.0 34 ................................ ATGCAGGTGTTGAACACGTCGGCATCCGCCATGC 60133 32 87.5 12 ............................NNNN NNNNNNNNNNNN Deletion [60177] 60177 32 87.5 33 NNNN............................ GTTGTTGTTGAGGACGTTGGCCTCGCAGTTTTT 60242 32 100.0 34 ................................ ATCCGAAGCCCGCTTCAGTTTGACGTTACAATCC 60308 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 7 32 96.4 30 GCAGCCGCCTTCGGGCGGCTGAGTGTTGAAAC # Left flank : GCGATAAGGGACAGTTCTTTAACAATCAGGAAATTATCGGGCGGGTGCGCATAAAGGCTGTGCTATACTCGCCCCCACTGCACTTTTGCGGCGACGTTGGCGAATAACAGGCCTCAAAGCCTGAATCGGCGGGCGTTCCGCAAAAGGCAGCAGCCGCCTTCGGGCGGCTGAGTGTTGAAACAATGTCACTTCGGCGGCCATGCAGCTGACGGGCGCAGCCGCCTTCGGGCGGCTGAGTGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGAGTGTTGAAACAAATTTGAAGAGGGCGGCCAGACGACCAAGTACA # Right flank : CATTGGACAGACAAAGGGCGTCGGCTGCTCGGCGCAGCCGCCTTCGGGCGGCTGAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTTCGGGCGGCTGAGTGTTGAAACAGGCGCTGGCCAACCGCACCCTGTGGCTCAAAACCGCAGCCGCCTTCGGGCTGCTGAGTGTTGAAACATCGGTCCGGACAATCTCGGGGCATCTGACGAGATGCAGCCGCCTTCGGGCGGCTGAGTGTTGAAACACCGCAACGGGCTTGCGTGCTGCGGCAGACGGTTGCAGCCGCCTTCGGGCGGCTGAGTGTNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGAGTGTTGAAACCGTAGTACGCGGCAACCAATATCGGTCTGCCGTCGCAGCCGCCT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.31, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGGGCGGCTGAGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 60589-61366 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB291165.1 Neisseria sp. oral taxon 020 str. F0370 Scfld985, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 60589 32 96.9 35 ................T............... ATCGGTCCGGACAATCTCGGGGCATCTGACGAGAT 60656 32 100.0 34 ................................ ACCGCAACGGGCTTGCGTGCTGCGGCAGACGGTT 60722 32 81.2 9 ..........................NNNNNN NNNNNNNNN Deletion [60763] 60763 32 84.4 34 NNNNN........................... CGTAGTACGCGGCAACCAATATCGGTCTGCCGTC 60829 32 100.0 34 ................................ TGCCCCACGCCGCCCAAGTGCAAAACGGTTTTTT 60895 32 100.0 34 ................................ ATCCGCCGTCTGATTGGGACGGTACGGCGTTAGC 60961 32 100.0 34 ................................ GTCCCCTTCGCCGGCGGCGTGTCCGTCCACCGTC 61027 32 78.1 8 .........................NNNNNNN NNNNNNNN Deletion [61067] 61067 32 84.4 35 NNNNN........................... CGCACATCTCGGCGGCTACGCCGTCGATGCAGACG 61134 32 100.0 35 ................................ TTCGGCCGATTTGTAGAGGCCGTAGACGCTTTTGT 61201 32 96.9 35 .....................T.......... GCGGCCGTCGATGTTTAGGCGGGCAAAGTCGTCGG 61268 32 90.6 34 ........A............T.........A GCAATGCTTTTTGCGGCGGTGGGTGGTGGTTGTG 61334 32 78.1 0 .....T......AA..A.T..TA......... | T [61355] ========== ====== ====== ====== ================================ =================================== ================== 13 32 91.6 30 GCAGCCGCCTTCGGGCGGCTGAGTGTTGAAAC # Left flank : GTGTTGAAACATGCAGGTGTTGAACACGTCGGCATCCGCCATGCGCAGCCGCCTTCGGGCGGCTGAGTGTTGNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGAGTGTTGAAACGTTGTTGTTGAGGACGTTGGCCTCGCAGTTTTTGCAGCCGCCTTCGGGCGGCTGAGTGTTGAAACATCCGAAGCCCGCTTCAGTTTGACGTTACAATCCGCAGCCGCCTTCGGGCGGCTGAGTGTTGAAACATTGGACAGACAAAGGGCGTCGGCTGCTCGGCGCAGCCGCCTTCGGGCGGCTGAGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTTCGGGCGGCTGAGTGTTGAAACAGGCGCTGGCCAACCGCACCCTGTGGCTCAAAACC # Right flank : CTTCGCTTATCATGGCGTAATAGTTGCTGTGTGGGTGGGAATTATCTTTGACATCTAGCGCAATAATCCAAAGGCCGTCTGAAAAACATTCAGACGGCCTCCGTTTGCAAACCGTTCACGGCTTGGCGACAATGTTGCTGGCAAACTGCCGGAACTCTTTTTGCAGCTCGGGTGCGGCCGATTTGGCCAGCGGCTGCAGGATTTCTGCGCCACGTCTGCCGCCTGCTGCGATGCGGTATACCGCCCACATGATTTTTTTCTGTAAGGGGTAGCGGTCGGCATACGGCGGGTCGAAAGCAAAGGCTTTGACGAGGTGCGGCAGTGACGATTCGGACGGACATTCGGCCAGCAGCGTCACGATGTCTTCATGCCGTTCGTGCCAGTCTTGCGCCAGCAGTTTTTGGAACGCGGCGAGCGTCTGCGGGTCTTTGCACGACAACACTTCATGCAGGATAACCGCGTATTCCGCACCGCCGCCGTTTTGCGTTTCGGTGACGCGG # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.58, 5:0, 6:0.25, 7:-0.35, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGGGCGGCTGAGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [12-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //