Array 1 430238-431790 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPLV01000003.1 Salmonella enterica subsp. enterica serovar Hato strain CFSAN059895 CFSAN059895_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 430238 29 100.0 32 ............................. GCTATGCCTTTAGGGGATTTCATACGCCCCTT 430299 29 100.0 32 ............................. GAAAACAGCAAAGAAAAAAAACTAACAGACAA 430360 29 100.0 32 ............................. TCCACCGGGAAAATAGTCCAAATGGCTAACGC 430421 29 100.0 32 ............................. GTTATGGGATGAGGACGACGTTGAAAAAGCAG 430482 29 100.0 32 ............................. AATCCCTCATTCCGTATCGCGCCAGCGTGTCG 430543 29 100.0 32 ............................. AATTACGATCCACGCAATATAGAGCGAAATAA 430604 29 96.6 32 ............................C GCTCTTTTGAACCTGCTGCATTACCTGGTCAG 430665 29 100.0 32 ............................. GATTACCGGGGCCTGTTGAAATCAACGGGCGA 430726 29 100.0 32 ............................. CATCAGCATGGAATACAAATTCGTTGCCATCA 430787 29 100.0 32 ............................. AGATTTTCGAACTGTATACTGGGGCGCTTGAG 430848 29 100.0 32 ............................. CCATGATGGATAGCGCGGAAATTGCCGAGGTT 430909 29 100.0 32 ............................. CACAATTTTACCGACGCTCCTGTAGAGCAAAT 430970 29 100.0 32 ............................. GAATTTAACCATCGTATTTGCAGTTATTGTTT 431031 29 100.0 32 ............................. CGCCGCAAAAAGTGGGCCGCATTGGCGTTTAT 431092 29 100.0 32 ............................. GCGCTTACTTTGTTGCTAACCGAATGCTGGCC 431153 29 100.0 32 ............................. GCAAAACTAACGAAGAAAGAACAGGCCTGGAT 431214 29 100.0 32 ............................. GTTATATGTGGAACATCCCAGGAAAACGCTGG 431275 29 96.6 32 ................T............ CGACCACAGGGCGTAGATTCCAGGGTCAATTG 431336 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 431397 29 100.0 32 ............................. TTTCCGCAGATAGCTGCGAACGCCGGTTATTA 431458 29 100.0 32 ............................. GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 431519 29 89.7 32 A...C.......T................ GGAATATGAAAATTATTATTTTTGCAACTGCA 431580 29 100.0 32 ............................. CGTTTCTCACCTTTTATTCCACAGCAGACGAT 431641 29 96.6 32 .................A........... GCCCGATCCCATCCTGGTATCGAGCCTCTGAA 431702 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 431763 28 86.2 0 ...........AT..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 449001-451959 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPLV01000003.1 Salmonella enterica subsp. enterica serovar Hato strain CFSAN059895 CFSAN059895_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 449001 29 100.0 32 ............................. GACGCACCGGAATATATGTTTGTATTTACCAA 449062 29 100.0 32 ............................. CCGCCCAGCGAGGTCGCCACCTATACGGCAGT 449123 29 100.0 32 ............................. TAGGGCAAATACATCCGCCGCTGACCACTGAT 449184 29 100.0 32 ............................. ACCGAGGAAAAAGCGCGCGAGCATTCTAAAAA 449245 29 100.0 32 ............................. CCTATGGATTAACCCGGCAGCACAGCAAAAAA 449306 29 100.0 32 ............................. ACCCGTAGCAACACGGCCACCTCTAACAACAG 449367 29 100.0 32 ............................. AACAATAGGGTTAAGTTGAGAACTGTTAATGG 449428 29 100.0 32 ............................. CAGGTTGCCACTTTCAGAATACGGTGCTGGAG 449489 29 100.0 32 ............................. GTATCGGGCAGCATTTTACCGAATACAGGGAT 449550 29 100.0 32 ............................. CATTCAATACGGAGGGTATCGATGGATATCAA 449611 29 100.0 32 ............................. ACCCCAGATAAAGACGGAAAAAATGGTATTGA 449672 29 100.0 32 ............................. AATTACCGAGCCAACCAATCGTTTTTATCTGC 449733 29 100.0 32 ............................. CCGCTGGCATCAAGGTTAAGGAGGAGTGAGGT 449794 29 100.0 32 ............................. TGCAGGGAGGTGTGTATGAAGTGCTGCGTGGG 449855 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 449916 29 100.0 32 ............................. GGATTAACTGTTTGCTCGTTCCCTGCCTCGCC 449977 29 100.0 32 ............................. GCGCTGGGGAATGTGCCGACCGGAAAACAACA 450038 29 100.0 32 ............................. CGACCGGCAAGATTAAATTTTCGGGAACGGCG 450099 29 100.0 32 ............................. AGTATCTTGTTATCCCGTTCATCGTTATGAAC 450160 29 100.0 32 ............................. GTCTGGAGGAAGAATTAGAGCTGGCGCGTATA 450221 29 100.0 32 ............................. TCCACCGCCTGGCGCTTGAAGGTGAGTTACTG 450282 29 100.0 32 ............................. AATTCCTCAATAACGATCTGCGCCAGGTTGAA 450343 29 100.0 32 ............................. TACGATTCTAGGGAAGGTGAACGCGCAGAATA 450404 29 100.0 32 ............................. GCGGATGAGTGTGGGGCTGTTGCCAGCGTCAT 450465 29 100.0 32 ............................. CCGCTGTCTTTGTCCAGTACGCGCACGCTGCC 450526 29 100.0 32 ............................. AATGATTTAAACTCATCACCAGCAAATCTGTT 450587 29 100.0 32 ............................. ACGAAACCAAAATCGACGCCGCGCCAGCACCT 450648 29 100.0 32 ............................. CCATGTATGCCGCGACAATTGAATCGGAACTC 450709 29 100.0 32 ............................. GAGATTTAAATGATCCACACGATTACGTTAAA 450770 29 100.0 32 ............................. GCCGCGTTGGTGGACGACGTCGGGACGATTTA 450831 29 100.0 32 ............................. GTATCAGGGCGTTATGTAAAAATCTTCTTTCA 450892 29 100.0 32 ............................. TTTCCGAAGACCTCGGCTGGCCCTTTGAAAGG 450953 29 100.0 32 ............................. GAGCATGTTTTCGGCCGGAACCTGCCGCGTGT 451014 29 100.0 33 ............................. GTGGCGTTTAGTAAACAACCACACAACGAGCGG 451076 29 100.0 32 ............................. ACGTAGATATTTGAGGGGATTATGGCGAAAAA 451137 29 100.0 32 ............................. GCAAGCTGGGCAAATGCGGCCACGGCGGACCA 451198 29 100.0 32 ............................. CTGGACGGTCGGATCGTGGGCAATTATCCGTT 451259 29 100.0 32 ............................. GCTACTTACAGAGAACTACTGGCAAAAGAAAC 451320 29 100.0 32 ............................. TGAAATAAATAATTCAAATCCAGTTCTTAGCG 451381 29 100.0 32 ............................. GCCGGGGAAAACTGGATACCGCCGCAAATACT 451442 29 100.0 32 ............................. CAGTTAGCTAATCGTGCATGGCGTACCGAAAC 451503 29 100.0 32 ............................. GGCGGTGCCGCAGGCAGCAAACATTCAGATTG 451564 29 100.0 32 ............................. CTTGATAACGCGGCTGGAACCAGCACCGAACA 451625 29 100.0 32 ............................. AGCATTATTCAAAGAAAGCGCGATAGAAAAAA 451686 29 100.0 32 ............................. CCTGGAACCATCGCTCAGATCCCGACATTCAG 451747 29 100.0 32 ............................. CCTCGGAAACGGCCAGCGCCGACAACGCCAGT 451808 29 100.0 32 ............................. TCTATTCAAGTAAAGGAAACGGGCTGACTGCA 451869 29 100.0 32 ............................. TTAGACGGTCGGATCGTGGGCAATTATCCGTT 451930 29 96.6 0 ............T................ | A [451957] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCTAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //