Array 1 276602-275064 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAST01000026.1 Salmonella enterica subsp. enterica serovar Typhimurium strain sg_29629 29629_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 276601 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 276540 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 276479 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 276418 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 276357 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 276295 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 276234 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 276173 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 276112 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 276051 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 275990 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 275929 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 275868 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 275807 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 275746 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 275685 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 275624 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 275562 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 275459 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 275398 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 275337 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 275276 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 275215 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 275154 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 275093 29 96.6 0 A............................ | A [275066] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 294715-292734 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAST01000026.1 Salmonella enterica subsp. enterica serovar Typhimurium strain sg_29629 29629_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 294714 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 294653 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 294592 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 294531 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 294470 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 294409 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 294348 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 294287 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 294226 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 294165 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 294104 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 294043 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 293982 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 293921 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 293860 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 293799 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 293738 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 293677 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 293616 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 293555 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 293494 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 293433 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 293372 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 293311 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 293249 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 293188 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 293127 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 293066 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 293005 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 292944 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 292883 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 292822 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 292761 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //