Array 1 58893-59776 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKOG010000003.1 Cronobacter malonaticus strain MOD1_GK1356 cmalGK1356_contig_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 58893 29 100.0 32 ............................. ATTACCAGGGGGGATATTGGGAGTATCTTCAG 58954 29 100.0 32 ............................. CCGATACCGGCGATTAATCGGGGGACGGTGTA 59015 29 100.0 32 ............................. CAGATATCATGCTGGCAGATTTCAGCGGGAAA 59076 29 100.0 32 ............................. TGTCGCTAACATAGTTTCTCCTGAGCGTGACA 59137 29 100.0 32 ............................. GCTGCGCAAATACGAGGCAATCGTATTAATTA 59198 29 100.0 32 ............................. CTCGAGGCGGATTTTGTGCCGCTACAGCTCAC 59259 29 100.0 32 ............................. GTAAAGGACCCGAGCGCCCGGAAATTGAGTTA 59320 29 100.0 32 ............................. ATGGCGCTCTCTACAATCTGGAGGCGATAAAC 59381 29 100.0 32 ............................. TGGATATCACCCGGCAATGGCCGGGGAACAGC 59442 29 100.0 32 ............................. CGCCCCTCTCGGGGCGCGCTCCTGTTAGTCTT 59503 29 100.0 32 ............................. CTTCGGCAACCGGATCGGCTTTGCCTCCATAT 59564 29 100.0 32 ............................. ATGGTCGCGCAAAGCGCCATGCGGCCTACACC 59625 29 100.0 32 ............................. CGGATTGCATCAGATAACCGACTCCATGAATC 59686 29 100.0 32 ............................. CGGATTGCATCAGATAACCGACTCCATGAATC 59747 29 93.1 0 ...........TT................ | G [59764] ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGGCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACCAGCCATGTCAAACAGCTTAACGGTAAAAGCGGAGTGTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAGGTGGTCGCCGATGCGCTTATCACTTTTGTGTGTATCGATCTGAAAACACAAAAAGCCTTACCGATTGAAGGCGAACTGCGCGAAAAGCTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCTTGTGCCGACAATCATGGACTTATCACCGCTCAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACACCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTAAGAAAATGTTGGTAGGATGTGGGTGGCGAAAAAATCGCAATAAGTACAAGTGCTTAACGTTAGT # Right flank : GCCCAGGTTCTTCACGCCTGTCAATCGCCTCCCCTTTTCCCGCCACATTCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAATTTTGAACACTGCGCAACGAAGGAGAGGTTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCAGGCGCATCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCGCTCTTTTTCCGGGCGCTGAACAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATCAAGGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCACGCGGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGGGAAATGACCGCCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 86549-88288 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKOG010000003.1 Cronobacter malonaticus strain MOD1_GK1356 cmalGK1356_contig_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 86549 29 100.0 32 ............................. TTCGGGCCAATTCTAAAAGGCGTTCCCTTTGT 86610 29 100.0 32 ............................. CCTGCCGCGCAGCACCGACAGCGCCGGTACAC 86671 29 100.0 32 ............................. CATTACCGTATTGACGGCGACGCATTAATCGC 86732 29 100.0 32 ............................. GACTCGCCCACCCATTTGGCCACCGCAACCAG 86793 29 100.0 32 ............................. TTGGCAAGATGTCGCTGAGTGAATCCTCGGTC 86854 29 100.0 32 ............................. CCCGAGACCGAGGCGCGGCTAAAAACGCTCGT 86915 29 100.0 32 ............................. GCTTTCGACGGACTTCCAAGAACCGAGCGAAG 86976 29 100.0 32 ............................. TGGTGACGGTTGACGCCTACGGAATCGAGAGT 87037 29 100.0 32 ............................. CACGAGGACGAATACGTCTGCTACGTGTACGT 87098 29 96.6 32 ..A.......................... GCCGATATCTCTGATTGTTACTCGTCGCTGAA 87159 29 100.0 32 ............................. TCCGTCCTGTGTGTGGGCGTTGACACTGGCGG 87220 29 100.0 32 ............................. AATCTCCTTAAGCGCGGCCATGTACATCAGGT 87281 29 100.0 32 ............................. GGCGGGCCTTGAATTGTGGGAGAAAAAAATCA 87342 29 100.0 32 ............................. TCCAGGACATGAAAGCTGACGCGCAGAAAAAA 87403 29 100.0 32 ............................. CTGATAGCTACGGCGAGGGGGAAACGTGTTAC 87464 29 93.1 32 ..........T.T................ CACCGCATCGACACGCCGACTGCGCAAAAAGA 87525 29 93.1 32 ............T.....A.......... GACGAATTATGGAACGTAAGTTTCTCGACTGG 87586 29 96.6 32 ............T................ AGGATATCGCTGATGCAGCGGCATATGAAGAA 87647 29 96.6 32 .G........................... CGCCGTGGATAAGAGCAGAGAGCAGTTTTTAG 87708 29 100.0 32 ............................. GGTAACTATACCTACGGCGACTTAAGGCATGT 87769 29 100.0 33 ............................. CCACCCTTTCATCCATAACCACCCCATCAACGC 87831 29 100.0 33 ............................. CCACCCTTTCATCCATAACCACCCCATCAACGC 87893 29 100.0 32 ............................. CCGCTGACGAATACGCCGTTATTTATGTAACC C [87902] 87955 29 100.0 32 ............................. GGTCATTGCCGTTCGCGCAGGTGAGGCCGTCT 88016 29 100.0 32 ............................. TGTCCCCGTTATCCAGAGCGGACTGCAGTCCG 88077 29 96.6 32 ............T................ ACTACACCCGAATCTACCCGAAATGACGCCGA 88138 29 100.0 32 ............................. GGGAAATAACCCTTATTGTCTGTTCGCCCTCT 88199 29 89.7 32 ...........AT....C........... TACTCTACGTAGTGCGAGAACGGCTCGCCTGC 88260 29 89.7 0 ............T............G..A | ========== ====== ====== ====== ============================= ================================= ================== 29 29 98.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCAACCGACATGCTGCCGCCCGCGATACCGCAAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGTATGCTGGTCGTCGTGACGGAAAGCGTCCCACCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGCGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAACGTGGTGATGGCGTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTACGGCGTTAATCGGCGGATTCCGGTAGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTAAACGCTCTTTAACAATGCGAGATTGTAAACCAAACGTTGGTAGGATGTTGTTGGCCGAAAAAGTGTAATAAATACAGTTATATAGTTTTAGA # Right flank : ATGGTTGAGTAGAATCGCCAGGCCAGGTGGGTGCGCTTTGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGACCCACAAAAACTTCCCGTGCGTGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCATGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCTCTCCCCGCCGCGATAACCTGCTTCGACTGTGCTTCTTTTAAGCATCCGCTCCTGTGTTTTCCCGTTCTTCCCACAGCTATTTATTTCCGCGTTGCCAGCCGCTTTATTTTATTCTGTCGTTTAAATTTAATTATACTGTCATTTATTTGTCATCTTATTGTCATAATAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //