Array 1 104879-104606 **** Predicted by CRISPRDetect 2.4 *** >NC_015951.1 Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 104878 29 96.6 32 ........T.................... TCTGACCGTTGACCACGGGGCCGACCTGCGGA 104817 29 100.0 32 ............................. GAACTCAACAAAGCCGTCCGTGCTGCGAACAA 104756 29 100.0 32 ............................. GTGCTGCTCGTGCGGGGCGCGAGCGCGATGTG 104695 29 100.0 32 ............................. CAGTTCGGGGTGGCCCCGGTGACGGCGCGGTA 104634 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CGTCACCGGCTGGATCACCCGCCACCCCGACAGCCTTACCCAAGACGAGACGTTACACCTCAAGGACATCCTCGCCCGCTGTCCGGAACTCGATGCCACCGCCGAGCACGTCCGGACCTTCGCCGAGATGATGAACGCGCGAACCGGTCACAAGCTCGCGGCCTGGGTCGACAGCGTGAAGGCCGGCAAGCTGCCCGAGCTGGTGTCGTTCGTGAACGGGATCGGGTGTGATCTGCGGGCGGTGGAGGCGGGGCTGACGTTGCCGTTCAGCTCGGGGGCGGTCGAGGGGCAGGTGAACCGGATCAAGATGCTGAAGCGGCAGATGTTCGGCCGGGCCGGCCTGGCGCTGCTACGCAAGCGCGTCCTGCTGGCCGCGTGACCGTCCCACGGCCGAGTCGGGTCCGTGACCGTCCGTCAGCGCTGCACGAAAAGTGATCCAGAACCACGATTCACCCGCCGCCGACACCGCCGGGTGGCTGGGCAACCGCGCTGAGGTGGTT # Right flank : CCGGCTACGACCTGGCGCTGCACGCCGCCGCGCACGGACGCACCCTGCTGTTCGCCCCGGTCTTCCGGCCCGCAACCCGGTACCCAACCTCACCATCCGGCGGCGGCCGATACTGACTCCCGAAACCGTCGAACAGGACGTCGCCTCCTTCGCCCACCTGCCCGACCCCGGTAGGCCTGGTGGACATCGACCACTTCCACCTGATGACCCCGGTCCTGCCCGAGCCGAGGTACGCCGACGGTCCGATGGACGACCACATACAGCCGGCCGACCAGGCGGCTGACACCGGACGGGGCTGAAGATGCTCGCGGTGAACGCCGCCTACCACAAGCCCACCGTGGTGGTCATGGCACGCATCACCCCGCCGGCCGATAGCAACGAGCCCCTGGCACTCGACCATCTCGGCCTGGCCGCCGAGATGGTCTACGACACCGACACCATCGACGTCCACATCGCCAAAGACCGGTTCGGCCCCGCGCCCCGACTCACCACCGTCGTTT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 107342-106946 **** Predicted by CRISPRDetect 2.4 *** >NC_015951.1 Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 107341 29 100.0 32 ............................. CCCCGTCGGGCGTCTCCAGGATCTTGCTGATG 107280 29 100.0 32 ............................. GCTGGCAAGGGCGTCCAGCGGTGGACCCCCGA 107219 29 100.0 32 ............................. GCCGGGGACCTCGCCCAGCGGACCTGGTCCCG 107158 29 100.0 32 ............................. TCGTGCACGGTGACGATGTGCGGATGGGACAG 107097 29 100.0 32 ............................. GTCACCACCGCCCAGGCGGGTGCTGTTTTCGT 107036 29 93.1 33 ........T...................A GAGCCGCAGGGCGGTGTCGGCGATCTTCTGTCG 106974 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 99.0 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CGACATCCAGCGCATTCTCGCCCCCCAGCGCGCCGCTGATGTCCATGAACCAGAAGAACAACTCGTTGACCTGTGGGACCCGGTCTCCGGTCCGATTCCTGGCGGCATCAACTACGCAGCGGACGCTCCATGACCACACGAGAGCTCCCATGGCATCCATGATCACAATTGCAGCCTCGGCGGTCCCCGATCATCTACGCGGGGCGCTGACCCGGTGGCTGCTGGAGGTCACACCCCAGCTCTATGTCGGTACTGTCTCGGCCCGTGTACGTGATGAGCTGTGGAGTACGGTCACAGCCTGCACCGCAGACGGCGTAGCCGTACTCGTCTATCCCGCCGACAACGAGCAGGGGTTCGAGCTACGAACCGCAGGTCAACAACGACGACGGCCGATCGACTTCGAGGGACTGACTCTCGTCGCCTTCGGATCTCTCCAACCAGATCCGCTAAGCAACAGTCAAGGAATGGCAAATCGGTTCTAACGGTGCAGGTCGCGAAGG # Right flank : CCTCTCGGCGTCGGTCGAACTCGGTTCTGGATCACTTTTCGTGCAGCGCTGACGGACGGTCACGGACCCGACTCGGCCGTGGGACGGTCACGCGGCCAGCAGGACGCGCTTGCGTAGCAGCGCCAGGCCGGCCCGGCCGAACATCTGCCGCTTCAGCATCTTGATCCGGTTCACCTGCCCCTCGACCGCCCCCGAGCTGAACGGCAACGTCAGCCCCGCCTCCACCGCCCGCAGATCACACCCGATCCCGTTCACGAACGACACCAGCTTCTTGTGATCACTTCCGGTCCTTCCCGGCGCTGCCGACTCTGTGGGTCTGATGATCAAGCCCCGTGAGCGATGTGGAGATAGGGGACGTCCTGTTCGCCGACCTGGACGGCCTGCAGGTCGACAAGGTCGAACTCAGCGAAGACGCGGTCAGCGTGACCGCCCGCGCATGCGCGGGCGAGGCCACCTGCCCGGCCTGCGGGACGAGGTCCCGGCGAGTCCACAGCTGCTAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 116959-117531 **** Predicted by CRISPRDetect 2.4 *** >NC_015951.1 Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 116959 29 100.0 32 ............................. TCAGCAGGATCGTCACGAGCCCGGTCCATGCC 117020 29 100.0 32 ............................. GAGATGGCCAAGGGCGGGCAGCCCCAGGCGAT 117081 29 100.0 32 ............................. CACCACATCGACGAGGCGACGGTGGCGGCGAG 117142 29 100.0 32 ............................. GGTGCCGGTCGCGTGGTTGATCTGGCGGATGG 117203 29 100.0 32 ............................. CCGCACTGGAAGACCAGCGCCTGGACCGCCTC 117264 29 100.0 29 ............................. CAAGGGGTGCCGACCGGCGGCGGCGACGT 117322 29 100.0 32 ............................. AATCGGGACCCCCGCGACCGTGCGACCGGCCC 117383 29 100.0 32 ............................. TTCATCGCGGCGACCAAGAACGCCGCCGCTCA 117444 28 93.1 32 ..........-..............A... CCGCGCTCGGTGTACTTGGGGCCCTCGCCGGG 117504 28 82.8 0 .....T.....T.AG..........-... | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.6 32 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : GCCCAGTGCGTCGCCCGCTCATGCCGCAGGCCCCGCTCCCCCTCCGCGCCCGGCGCCGATGCATACGCCTCGTCTGCGGCGAGGACGGCGTACCTGCCGGCCGACATGCTCTGAAACGGCGGAGTGATCTTCCCCAGATCATGCAACCCCGCCCAACAACACACCCACCGCCGCGACGCATCCTCACCCAGCCCCAGCCGCTCAGCGATCAGCCCATGCGAGCGGGCCCCCAGCATCACGTCCCACAGCCGACCCGCGATGGCCGCCGTATCCAACAGATGACAGATCAACGGATAGGGCCTCAGCAGCCCCTTTTCCTTCCCCCACAACCGCGCATCGAGCTCAATCCCAGCAGGCGGTAACGGCGTCTCGTCCATGCCGTACGACTACCAGCAGCCACTGACAATCGCCGACCACACGATAGATTGGCGCGCATGCACAACAGCCGCTCCTTGAGTCAAGAACACGCTAAGCCCCTCTAACGCCGCAGGTCACGAAGG # Right flank : GGAGCCAGACGCGGCCGACCGGTTGGCCGCGCAGCCACTCCAGTGCGGGAAGCAGATGGTCAGCCCTTGGGGTCCTCCGGCGTACGTCTGCGCAGGCGGAGGTGAGCGGGGTAGCTGTTTACGGAAGTCCTCTCGGTGTGACAGCGGCCAGCTGGAATTCCCCACGTACGGCCAGGTGCGGTGTCACTGTTCGTAGTCGGAATTCAGACGGCCCGGCTGTGTCGCACGGTCCCGGCCCGGGCCCGGGGCTGGCCGCTAGGCGGGGCGGAGACCGTCCATCAGGAGGTTCAGCAGGCGACTGGCCTTGGCTTCACGTTCGGGCCGGGGGGCCACGGTGAAGATGCCGATGAGGGAGGCGGCGATGTCTTCGGCGGTGACGTCGGAGCGGAGGTCGCCTGCCGCGCTGCCGGCGTCGAGAATCGTGGTGATGGCCGCCAGTAGCTCGGTCCGGGTCTGTGCATGGGCGATCTCGCCAGACTCGATCATCGCAAGCAGGGTGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 121521-121696 **** Predicted by CRISPRDetect 2.4 *** >NC_015951.1 Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================= ================== 121521 29 100.0 32 ............................. CCGGACCCGTACCGGCGTCCGATGCGGTCCCA 121582 29 96.6 57 ..........................T.. GCCCCGCGCGAGCGGAGGTGAGCCGCCCAGGACTATGGGCGGTACGACCAACACGGG 121668 29 93.1 0 ..C......................A... | ========== ====== ====== ====== ============================= ========================================================= ================== 3 29 96.6 45 GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : TCGACAGCGTCCATCAGCTGCCGCAAGCCGTCAGGGTCGTCCTTGAGAAACCGGGCGGCCGCGTTCACCGCGCCCTCGTCCCAGATGATCGCGTAGGTCAAGAAGCATGCCCCAGCCCGAGCTGAGCACGCACCTGCTCATGCGGCACACCCGTGGCCTCGCCGGACGCCTGCCGCGCCCGGTACTGCGCCAAGGCAAGGGCGTCCTCAAGGTCGGCCAGTTCCTGCGGGTTGATCAGGACCGCCGCAGGCTGGCCATGGTCGGTGATGGTGATCCGCTCACGGGCATGGGACGCGCGACGCACCAGCGACCCGAACCGGGCCCGCGCCTCCGTAATCGGCAACGTGTCACTCATGCAGAGAACTGTACACTTCACGCGCTTCGCGCCGTCACCATCCCGAGCACGAATAGAGACGAGCGATAGGTTGAGGTGCGTGTACGACCGCCGCTCCTTGAATCAAGAAAACGCAAAGCCCCTCTAACATCGCAGGTCGCGAAGG # Right flank : GACCAGGATCACCGCCCGCTCGGGCGGAAGTGAACCAGGTCGATCGGCTGCGTGCCGCGCCCGCCATGGCGCCGAGGGTCGGGGCGTCGGGGACGACGTCCAGGCGGTCGGCGTCCGCATCGAACTTCGCTGCTTGGGCGTGGGCCGGTGAGCTCTGGCGCGGCCGCGGCGAGGATGTCGTCCCACTGCGCGAGGACGCCGCCGCTGGCGGCCGGGGCGACCATGCCGCGCCCGGTCATCATCAGGGTGATGACGGTACACAGCCGAGCGGCTCGCGGCCATCCCGCCGTACGGCCTGGCCGGTGCGCCGCTTCGTCTTCTCCTTGCGGTGGCCGCGGTTCTTCTTCGCCTGCTCGCAGGCGGCAGCCAGGGCTTGGCGGACGAGGTCGACGCCGCTCAGATTGCTGGTCATGGGATCACGCCCCGGCGGTGTCGAGGGGGCGGGCGGCGTATGCGGCATGGGCGGCGGCCTGCTGCCCGAGGCGCCTGGAGCCCCGTTG # Questionable array : NO Score: 4.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.89, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.70,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 125601-126116 **** Predicted by CRISPRDetect 2.4 *** >NC_015951.1 Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================= ================== 125601 29 100.0 32 ............................. CATCTGACCGGAGGCGCCCAGTGACCGCAGGC 125662 29 100.0 32 ............................. TTGCCCCACACGTTGCCGTCGGCGTATCTGAC 125723 29 96.6 93 ............................A TGCTGGCCGATCATGTGACGCCAGATCGCGCGGGGCCCTCTCCACGAGCGGTGGTGAACCGGTCTGACGTCCCTTGGAGGGGTGGCAGGCCCA 125845 29 86.2 32 ..G..T...A.A................. AAGCACGACGCGGTGACGCGTGAGCAGCTGCT 125906 29 86.2 28 ..G....G........T...........A TTCCGTGGGGTCAAGGACGACCAGGGCC 125965 29 89.7 32 TG.......................C... GTGCCATCCATCACTGCGTAGGCGTCGCACCG 126026 29 93.1 34 ..G......................C... CTGACCGTCGACACGGGTATCGCCCACAGTCAGG 126088 29 75.9 0 .C.T...T...C..............AGC | ========== ====== ====== ====== ============================= ============================================================================================= ================== 8 29 91.0 40 GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CAGGCGAGCTGGGCCAGCGGTATCCCGCGATCGTGCGGACCTGGCAGGCCGCGTGGAGCGAATTCACCCCCTACCTCGCCTTCCCGCCGGAGATAAGGAAGGTCGTCTACTCGACGAACCTGATCGAGTCGATCAACGCACGGCTGCGGAAAGCCACCCGCAACCGCGGACACTTCCCCTCCGAGCAGGCCGCGTTGAAGGTGCTCTACCTCGCCATCCGTGAGCAGGTCACTCCCAGAGCGCGCGATGTCAACCACGTCGCGGCACACTGGAAGAAGGCACTGAACCAGTTCTCACTCTTCTTCGAGGACCGGCTCAACACCAAGTGAAAATCGAGGACTTACACAAAGTTCCGTACACGCCCTCTCGGGCTGATCGCCATTGTGGCCAACAGCCTGGCCGCGCTGACAGAGGCAAGCGATACGTTGTGGCGCATGTACGACCGCCGCTCCTTGAATCAAGAAAACGCAAAGCCTCTCTAACGTCGCAGGTCGCGAAGG # Right flank : CGGACAGCGCAAGATCCTTGTAGGCGGACAAGTCAGATCCTGCTTTGCGGACAGTTGATCTCCCTTTCCGTGGACCCATTCGTGTCGGTTCCGAACAGGTGATCCCTCCGGGGGTTGGCTCGGTGCTGCCTGGCACCCGAACCAACTCATCTCCGGAGGGATCGTGAAGAAGTCTGACAGGGAGATCATGGAAATCTTCGAGGCTCTCGACGCCACCGAATGTGCGCATTCGGCGGCTGTGCTGGCGGGGGTCGATCCGAAGACCGTGCGCCGGTACGCACGGATGAGGGACACGGGTCGGCCGATTTCCGGTCCGGTCGTGCGACCGAAGCTCATCGACCCGTTCATGCCGAAGATCGAGGAGTGGGTCGAGCGGTCCGAGGGCACGGTGCGGGCCGACAAGCTCCACGAACGCCTGCGACTGCTGGGGTTCACCGGCGACGAGCGCACGACCCGCCGCGCGGTGGCGAAAGCGAAGGAACGTTGGCGGTCCGGCCACC # Questionable array : NO Score: 4.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:-0.74, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [17-39] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //