Array 1 1753-104 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZTU01000067.1 Aggregatibacter actinomycetemcomitans serotype d str. SA508 contig0067, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1752 28 100.0 32 ............................ TTTAGGAAGAAATGAAAAACCTGTTTCACCTT 1692 28 100.0 32 ............................ ATAAGAAAAAAATCATTTGCCAATCCATAAAT 1632 28 100.0 32 ............................ TGATGGAAAGACGCTTTGCAAAGGGCCGAGTT 1572 28 100.0 32 ............................ AAGGAAGACGATTTAGGGCAATTAATAAGGGT 1512 28 100.0 32 ............................ TTTTAAGCGTTCTACAGTCGCATTCAAAGCCT 1452 28 100.0 32 ............................ TTTTGAACTTGGCGCAAGCTGATAAATTTTGA 1392 28 100.0 32 ............................ TCTTTCGGTTGAGTCATGTCAACCTGAGTAGC 1332 28 100.0 32 ............................ TATTCTTGGCTCGGTTACTTATGATAGAAATG 1272 28 100.0 32 ............................ TATAAATACTGGTTACAGGCAAATGGGGTAAG 1212 28 100.0 32 ............................ TGATTTGGAAAGGACATTAAGGGCCGCTAAAA 1152 28 100.0 32 ............................ TCAATATTCGTTACAATGCGTCTTCCTTTGAG 1092 28 100.0 32 ............................ TTTATTGGTGAAGCGCATAGTTTGTATGGTGA 1032 28 100.0 32 ............................ AAAAACAGGCTGCGATTGGTTTAATGATTTGG 972 28 100.0 32 ............................ TATGTTGCGTAATGATATACGTAATTTTTTCG 912 28 100.0 32 ............................ AGCCCCTGTAGGCAATGCTAATAAAGGATTGT 852 28 100.0 32 ............................ ACGTAAAGGAATTAGTTGCTCAAAATGCTGAA 792 28 100.0 32 ............................ ACATTGGGTTGGTTGGCGTTATATAACTACTG 732 28 100.0 32 ............................ TATTTTCCAATTTATCTAAATGTTTTTTATAG 672 28 100.0 32 ............................ GATAACTCTTTGTCGATTAGATTTGATACGCA 612 28 100.0 33 ............................ CTCTATGCCGATAAATTGGAGTTCTTACACCCT 551 28 100.0 32 ............................ AAATCAGAAAGATAAAAAATGTAAGTCCAAAG 491 28 100.0 32 ............................ CGGGTATTACAGAGCTGCAAAAAGCATATAGC 431 28 100.0 32 ............................ ACCTGGTGTTGTAAAGGGGTGACGTTTGAAAC 371 28 100.0 32 ............................ TCTGCAATCAGCTTTTCGGTGCCGTAGGCTTG 311 28 100.0 32 ............................ ATTCAAATGCTGGAAGACGCTGAATTAATCAC 251 28 100.0 32 ............................ CTTACCATCACCTTTGCCATTGTTTGTTCCGG 191 28 96.4 32 .................T.......... GGCAGCGGTAAAAGTTATGAGGTGGTCCATTC 131 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.9 32 CTTCACTGCCGAATAGGCAGCTTAGAAA # Left flank : CGCTCGCCCGTCGTAACGATGAAAATCCGGAAGTCACAGACCGTTTTGAACTCTTCATCGGCGGACGTGAAATCGGTAACGGCTTCTCAGAATTAAACGACGCCGAAGACCAAAACGACCGTTTCGACGCACAAGTCGCCGCCAAAGAAGCCGGTGATGACGAAGCGATGTTTAAAGATGAAGACTTCGTGATCGCACTCGAACACGGCTTACCACCAACAGCCGGCGAGGGCTTAGGCATCGACCGCTTGGCAATGCTCTACGCCAACGCGCCATCTATCCGTGATGTGATTTTATTCCCGGCAATGCGGCAGAAGTAGTTAGCACAACTATCAAGATAAAAGGAAGTCATTCGGCTTCCTTTTTAATTCCCCTTTATTTGCACAATAAAAAAATCCCCTTTAAAAACAGTATATTAAAAACACAATCTATAAAAAGGATTTTCACTTTAAAATACGCTAACAACTTGGTATATCAGCTATTTTCAGTTAGAATGCCTA # Right flank : AATACACGCTTTATGATACCGATTGCAAAGTGTAGTAATACACTAATCCCGCATTCCTTAATAAGTGGTAAAATACCATCAACAAGAGGATTTTATAATGAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGAATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //