Array 1 705-2324 **** Predicted by CRISPRDetect 2.4 *** >NZ_QQMQ01000028.1 Neisseria meningitidis strain M09624 M09624_CHA4858A47_cleaned_ctg_8587, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 705 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 771 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 837 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 903 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 969 36 100.0 30 .................................... ACAAAGCCGCAAATCGTCCGCCGCGTATCA 1035 36 100.0 30 .................................... TTGCCGGATGAAGAGGTGGCGTTTGTTGCC 1101 36 100.0 30 .................................... TCAATGATAAAACTAAAGTTTAAACAGAAC 1167 36 100.0 30 .................................... ACTCCCTGTTTATCGGTTTTTCAGCTTAAA 1233 36 100.0 30 .................................... CTGAAGCCTCTCTTTTAACGCCATTTTTAT 1299 36 100.0 30 .................................... GTCAAGCATACTAAACGATTAATAGCTTAG 1365 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 1431 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 1497 36 100.0 30 .................................... TCATAATTGTATAGGTAAATGTCATCAACA 1563 36 100.0 30 .................................... CTGATGAGTTCTCTACGCATGGGACGTAGG 1629 36 100.0 30 .................................... GTGCATTCTGCCTCGTCGGCTGGTACGTAA 1695 36 100.0 30 .................................... TCAGTTGTTTGATTTAAGCAAGATTCCTGT 1761 36 100.0 30 .................................... GCGTAGAACAACCGGCAATGACTAATTTTG 1827 36 100.0 30 .................................... TGAAGTTGCGCCGATTGCACCAACTGATGC 1893 36 100.0 30 .................................... ATCCGTTTGAGGCTAACAAGCCAGCCACTA 1959 36 100.0 30 .................................... AAATTCGAGCAAAGATAGAAGCAACTTGTT 2025 36 100.0 30 .................................... TGAGTTGTAGTTGTAGCTAGCATCAATAGA 2091 36 100.0 30 .................................... AAATGACGATGCGGAACGATTCAGGCAGAG 2157 36 100.0 30 .................................... AATGACGAGGCTTTGGATTGCGAGGATTTA 2223 36 100.0 30 .................................... AGCATAAACTCGCGAAACTTCGTGTAGCTC 2289 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAGCGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGCCGGAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //