Array 1 135428-142592 **** Predicted by CRISPRDetect 2.4 *** >NZ_FIHB01000004.1 Streptococcus suis strain LSS55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 135428 36 100.0 30 .................................... AACTGCTGGATAGTTTGGAACTTCTTGCGC 135494 36 100.0 30 .................................... AGGTGGTATGTACCTATTTAATTTCAACCG 135560 36 100.0 30 .................................... GTTCTTCAAAGAATTGTCTTTGTTGTTCGC 135626 36 100.0 30 .................................... TCCAACACGCACAGACATATTAGAATCATG 135692 36 100.0 30 .................................... GATTCTCGATACGGTATTCATTTCGTTGTT 135758 36 100.0 30 .................................... TATAGAATGTACATACTTTATAAATGATAT 135824 36 100.0 30 .................................... AGCTTTAGGTCTTGTTATTTTCGGCTTGAT 135890 36 100.0 30 .................................... TAAAGGTCTGAAATCCGTCAGTGATGCTAT 135956 36 100.0 30 .................................... GAAAGTTGCTGATAGTTGGACTGGTCTAAA 136022 36 100.0 31 .................................... TCAAGGTCAGCGGCTACTGCTCAAGGGGTAG 136089 36 100.0 31 .................................... CATTTTCCGAGGCTCTCGCATTATCAAATAA 136156 36 100.0 30 .................................... GCTTCCAACTGCTCCACCAGCTACCAGCTC 136222 36 100.0 30 .................................... CAAAGTACACCAGCGCCAGCGAAGCCTTGA 136288 36 100.0 30 .................................... AAAAATGTATGACAAGCCAGTAGTTTATGA 136354 36 100.0 30 .................................... ATTGACTAAGCTTCTCGATTTTATCCGTGA 136420 36 100.0 30 .................................... CAAATGGATATTACCTGCCTAAGTCAGAGC 136486 36 100.0 30 .................................... GGCTTCTATGGTTTTACTGATAAAGCAGGT 136552 36 100.0 30 .................................... AAGGACAGAATACTTTGTCATCCTCGGCTC 136618 36 100.0 30 .................................... CAATCCTCCGCCTTGCATGGTTCGGATGGT 136684 36 100.0 30 .................................... TTGCGCTGGTGTATCTTCTGGCATAACGGC 136750 36 100.0 30 .................................... AGTACCAAACTACCCAGCCGTTGAACCTGC 136816 36 100.0 30 .................................... GCGCAAGCAATGTCAGAGGATTAACTCCTC 136882 36 100.0 30 .................................... CAAGACACAATCTTCTATTACATTAGACTT 136948 36 100.0 30 .................................... CAACTCTCCTCCTTCGACTTGTTTGGCTAC 137014 36 100.0 30 .................................... TCCGCTTCTAATATTGGTGGTGATTATAAC 137080 36 100.0 30 .................................... CGTTTGGCAACGATATTGTCCACGTTGTCC 137146 36 100.0 30 .................................... AACTACCACCCCCAACACGTGTGACGACTG 137212 36 100.0 30 .................................... CATGGGTGAAAACTTTATCGCTTGGCATTC 137278 36 100.0 30 .................................... CTATCGTCAAAGAAGATACTATTAATCCTA 137344 36 100.0 30 .................................... GACTACGAACGATTTTCGAACGCATCTCCT 137410 36 100.0 30 .................................... ACGGATAGTGCAGGGAACCGCATTAGCTTG 137476 36 100.0 30 .................................... CGTAAATATATGGATCCGTTAAACGGTTCT 137542 36 100.0 30 .................................... TTTAGCAAGTACCTTACGGGTTGCCGCCCT 137608 36 100.0 30 .................................... GATTCTTTCAAATCGTTGCCCAAATCATTT 137674 36 100.0 30 .................................... AACGACTTTCGCCCCTTATCATACAAGGAA 137740 36 100.0 30 .................................... GAGAAGCCAGTGAGCGAAAAAACGGTCCGC 137806 36 100.0 30 .................................... AAGATTTAGTTGAGCAGTATATTTCCCTGT 137872 36 100.0 30 .................................... CGACCAGGCAGACAAACCACCAATAGTGAC 137938 36 100.0 30 .................................... TTTGCTGAGACCAACAAGATCGCGACCAGT 138004 36 100.0 30 .................................... GCATCGGTTTCTACAAAGGTCGTTTCTCTA 138070 36 100.0 30 .................................... GCGAGCCACAACGCCAGCAGCAACCACAGC 138136 36 100.0 30 .................................... GCGGCTCGGTGTTGATGATGTTGGTCTGTT 138202 36 100.0 29 .................................... TGTGCATAAATCAACCGTTGCCATTCAAT 138267 36 100.0 30 .................................... AAGCAAAGAAGACGGAGACCTTTCTTTCAA 138333 36 100.0 30 .................................... CATGAACGCACTTCAAGCCGTTTTCCAGTC 138399 36 100.0 30 .................................... TTCTTCGTAGCAAGAGCGAGTGAGTTCATA 138465 36 100.0 30 .................................... GGGTCAAAGGGTGCGATTTCGTGGACCCGT 138531 36 100.0 30 .................................... TGTCCGAGAGTGTAGATGCGTTCTCGATTT 138597 36 100.0 30 .................................... TAGTAGAAACTAGAAACATAAAAGAAGCCA 138663 36 100.0 30 .................................... TAAAAAATCAAGTGGTAAATGCTGTCTTAT 138729 36 100.0 30 .................................... TACTATCGCAGATGCTACAAACTACGCTAT 138795 36 100.0 30 .................................... AAAACGGACATCGTCAGCAGTTGATGGGCG 138861 36 100.0 30 .................................... TGCTTTTGGTGGAACAATTCAAGTTGTTGA 138927 36 100.0 30 .................................... GTAACTCAAGAACAACTCAATGAATTGTGT 138993 36 100.0 30 .................................... TCTTTCAGAAGATGACGACATCAGGACTAT 139059 36 100.0 30 .................................... TGCAAGAATAAATTGTGTCAGATGTGCAAT 139125 36 100.0 30 .................................... AAGGAGAACACTTATGTCATTCTTTCAAAG 139191 36 100.0 30 .................................... ACTATTTAGATGTTCCTATGGAAGAACTTT 139257 36 100.0 30 .................................... CGTGAAAGTACCAGATGCCGGACCATTGTC 139323 36 100.0 30 .................................... AAGGAGGGATATGCCCATGCTTTACTCTAT 139389 36 100.0 30 .................................... ACGCCGGTCGCAACGATGAGGCTAAAGAGC 139455 36 100.0 30 .................................... CTCTTTTGAAACATTAGCTACACTACTCTT 139521 36 100.0 30 .................................... CCAAGCTGAGTTTAGAAAGTGGTTGAAAAT 139587 36 100.0 30 .................................... CTGAAAACGAATTGACTCGAGATGCCATCA 139653 36 100.0 30 .................................... AAGGGTATAGTGTTTCTTATCGTCCGTCAT 139719 36 100.0 30 .................................... GGATTTGTAAAATGTGTTTGACATATGTCT 139785 36 100.0 30 .................................... CACAATGGCTGGTTCTTTGAAGATTCTAGA 139851 36 100.0 30 .................................... GCTTCCAACTGCTCCACCAGCTACTAGCTC 139917 36 100.0 30 .................................... AATGGTCTACCCAACTTCTTCTCTTCGACA 139983 36 100.0 29 .................................... CGTTTTATTCTTTTGTTCAGGGATCACTG 140048 36 100.0 30 .................................... TAGCAACATTCAGCAACATGGCAGAAGCCA 140114 36 100.0 30 .................................... TCGAACGTTCCAGTTCATCTACCTTGATAA 140180 36 100.0 30 .................................... TGGAAATGCACGGATGCTGAGCAGGGCATA 140246 36 100.0 30 .................................... AGAGTCAAAGAATTCTATTGGACAAGGGAA 140312 36 100.0 30 .................................... TTCACCCAGACAGAGACAGGTAGAGAGCTT 140378 36 100.0 30 .................................... TAAAGTGATGACTGATGTAGCCATGAAAGG 140444 36 100.0 30 .................................... AGATTTCGCTAATGAGCATGACTTGAAAAT 140510 36 100.0 30 .................................... CTTAGCAAGAGGTATGGTATCGTTCTGTCT 140576 36 100.0 30 .................................... TTTGCTGATGTTCGTTTCTGGATATGTTGT 140642 36 100.0 30 .................................... TGGCTATGCCACATTCACAGAAACCATTGC 140708 36 100.0 30 .................................... AACATATCCTTCGTATAAATCCATTTGTTT 140774 36 100.0 30 .................................... AAAGGCAAGTGACACCATTTGGACTATCTG 140840 36 100.0 31 .................................... CAGCCCTGGCGGACTTATCGACCCCGCACAA 140907 36 100.0 30 .................................... GAATGCAGAGGGAAACATTTGCATAGATAA 140973 36 100.0 30 .................................... AAAAATACCCACAGTTTCGGTGGGTAGCGT 141039 36 100.0 30 .................................... CCGGGCTTTGCTTGAAAAACAGCACGAGCC 141105 36 100.0 30 .................................... AGCTTTGCCGACAGCTCCTCTCGCCCAATC 141171 36 100.0 30 .................................... TTCGTCTTCGTCCATCTCCCAGATGTTAAT 141237 36 100.0 30 .................................... AACCTGGAAGTTCTTATCATCATGCACGTT 141303 36 100.0 30 .................................... TAAAGAAGTGCTAAAAGGAAATCTAGGCAA 141369 36 100.0 30 .................................... AAAGTTCGGCAGTATTGACGCATTCTGGCT 141435 36 100.0 30 .................................... CCGTTGACAAAAAAGAAAGACTTGTCACAG 141501 36 100.0 30 .................................... GCCTGTATTTGGCGTTATGCGAATCCATAG 141567 36 100.0 30 .................................... AATGTAATTGCGCTTTTTCTTCTGCCTGTA 141633 36 100.0 30 .................................... GCAGATTACTGGAACCACATACATTCAAGA 141699 36 97.2 30 ................A................... ACAAAATAGCAAAAACCCTCAGCGATTTGC 141765 36 100.0 30 .................................... TGGTAGCAGAGGACTTAAAGTCCATATTAG 141831 36 100.0 30 .................................... CAGAAACGCTCGTATAGCTCCGCTGACAGT 141897 36 100.0 30 .................................... TGGGCGAGGCGAATATGAGGCGTGTGACGA 141963 36 100.0 30 .................................... AAATTCTTTGTGCAATGTCCCGTCTTTCTT 142029 36 100.0 30 .................................... AGGTCATTACAGACCTAAAACTCGAGTTAG 142095 36 100.0 30 .................................... CCGGTGCAAGCGCTTGGACAATCTGAACTA 142161 36 100.0 30 .................................... CCCCTACTCTGTTAAGAATGAAATCAAACA 142227 36 100.0 30 .................................... TGTCGCAGGGTATATTGTGACAACTCCCAT 142293 36 100.0 30 .................................... CAGAAACTTTATCAGTAATGCTATTTCGGT 142359 36 100.0 30 .................................... AAAAACATTTCTAAACAATACACTAAAGAA 142425 36 100.0 30 .................................... ATTTGACGATGATGATAGATTACTCCACTA 142491 36 100.0 30 .................................... CTGCCCCAGATTGACCTCTAGCGTGTAGAG 142557 35 88.9 0 .........................A.-.A.....G | T [142590] ========== ====== ====== ====== ==================================== =============================== ================== 109 36 99.9 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGAATTCTTGTCTTTATCAATGTGTTATCCTATTTGACAATGGATGAAATTCAGAAAACTAAGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAATAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGAAAAATATGGTAAAATAAGTACATATAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAAATTTTGTGGCAAAAAATAGTCTACGAG # Right flank : GCAGTAAGTTTATAAAGGAAGGAGGGGAGTATTTGGATGTCAAAACTGTTATTTTTTAATACTCCTATTTCTAACAGTAGCAGTGAATATTGTAACTTTAATTATCAAAAAAATTACTAAAGAGATCGAAAGAAATAAGTGGGGATGAAATTGACAAAGAGCTTAATTTAATAGGTCTTCCTGATTAAAACCTGCATTTATATCATTGTTTTAATTTTTTCTAGTTTTTACGATAGCCTAGAAAATACTGTCGAAATTAATTCCCCTCCATTTTCCTCCAAGATTTCTAACTCGCCCTTGTCCCATCTCCCTCTCCATGCTATACTATATATAATCGTTTTACTTCAAAGGAGACAAAAATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAGGGCTTGCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //