Array 1 26866-26698 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJOT01000006.1 Lentilactobacillus buchneri subsp. silagei strain NK01 sequence06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26865 36 97.2 30 ................................C... CCCAATCTTTTGCGCTTTCGTCATTCGCCG 26799 36 100.0 30 .................................... TGCAAGAATCAACAGGTTTCAGTCATCGCT 26733 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 99.1 30 GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Left flank : CAGCGATGGTGTCAGTGACAAGTATAATTCTGGCATTTTTAAGCAATTAGAGGCTGTGTTGACTGATGATCAGCGTAAATCGATAACTGATATTAATAATCAATTGTATACGGTCGTCCAGCAGTGTTTGTTTATGATCGACTTACCTCTGGAAGTCACTTATGATTGGGATTTAAAGAGGCTGTTTAAATACTGTAAAATTCATTTTAACGCTGATACCATGCTGAATCCTTATGCTATAATTGAATCAATTATCAAAATTCATTTAGAGTGTGGATTGAAGTCGGCTGTTGGTTTAACTAATGTCGCTCATTATCTTAATCAGCAGCAATTAATTGATCTATCCAAGCTCACAAGTTCCGCGGGGATCTCGACATTATTAGTAGAATTCACAGATATGAAGTCACAGGAGCTTTATACCAATTGCGACTTTTACTACATCGACGAGGACTTTGTTGATTGGCATTTATAATGCATTAAAATTCGGTTATAAAAAATCG # Right flank : CTTCAGGAAAAGGAATCAGTTCAGCGGTTGGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAAACCCTTGGCAGCACAAATCAAAGCATTGACACCGGTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCCTATCGAACAATAAAAGGCGGTGTAATTATGGTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCCATGGATGAATAAATAGTGTCCATTTTAGACGTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCCTTAATGTATAAGTGGATCCCGAGATTGTGGGTTTTAGA # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 1 324593-324743 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJOT01000002.1 Lentilactobacillus buchneri subsp. silagei strain NK01 sequence02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 324593 29 96.6 32 ............................T ACATGGTAGGAAAAGTCTTAGCGGCACACGTT 324654 29 100.0 32 ............................. AGTCTGGAGGACTAAACAATGAAAATAACCAT 324715 29 93.1 0 ...........................NN | ========== ====== ====== ====== ============================= ================================ ================== 3 29 96.6 32 GTATTCCCCACGTACGTAGGGGTGATCCC # Left flank : ACCACCATCTGAATTTCGCTTCAATTCTCGAGAAACCGTTGAACAACTTTTCTGGATCTCCTTGGCGATCGCACACAGTGAGTTTCCATGGCTCCGCATTAAGAATATTGTTTCTCGTTCATCTATGGTAATATGCTGGTAGTGGTTCATGGCTAGTTTCCTTTCATGATTGTTCTCGCAAACATCATTTTACAGGAATTTGGCCATGAGCCATTCTTTATTTAATTAGTGTTGCACTTAAAGTGTAAATTCAAGCTTAAAAGTTAAAAGCTGGACTAAGTCAAAATTGAATTAAACTTTGGCTTAGTCCAGCTTTGCTATAGTTATTCGGCCTTCGAATTCGATAGGTAATCCCTTAGATGCTATACTTAAACAAGAAAATTCTTTACTAAAGAGGTTAAGCTGAACTATTTCATCGATAATATTTTGTCCAGGTTAAAGGTCATTGAAAATGAGTGTTTTGTTATTTTCAAATGGCTCAACGACGGCGTTTGTTTAGT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGTGATTCTTCTTGAATCTGTTCATCCCGCTTGGAATCTTTGGTATTCCCCACGTACGTAGGGGTGATCCTCACGGTGA # Questionable array : NO Score: 5.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTACGTAGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 338056-338331 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJOT01000002.1 Lentilactobacillus buchneri subsp. silagei strain NK01 sequence02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 338056 29 100.0 32 ............................. CTTCCAAGTGAGGCGGTAAGGAGCATTTTATG 338117 29 96.6 32 .......T..................... TACGGTGGCGATCACATTGACCCATACGGCTA 338178 29 89.7 32 ...........A.G...........A... TCACGGTGTCCAGATTTTTGCCGGAACTCCCA 338239 29 93.1 32 ...........A.G............... GCTCGCGCGGGACCCGGCTTCCCTGGACCCTT GGG [338257] 338303 29 89.7 0 ........T.....T..G........... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 93.8 32 GTATTCCCCACGTACGTAGGGGTGATCCT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCCAAATACGATTA # Right flank : TGCGACTAACGAACTTCAAATGATGGATTCTTAGTATTCCCCACATGTGTGGGGGCTCCTTTCTTGCAAAAAACTATTTTCACAAACGCGTTGGGTTGGCTCCAAAAAGGTGGAACACATTCAGAAAAGTTCAAGACAAAAATTAGCCTCTGATGGCGCAACAGTTGTAACCCGCCGCTCAAGTCCGGCAATAATTCTGCCGAAACTCAAAAATAGCACCTAACCAGTTGGCTTTCACCAACTAGTCAGGTGCTATTAGTATTTTGCGTAACCATCAACCAATTTCAAAACAGATACAATAATTTGAAAATGCCATATAGATTTCGTTTCTAACGATAATTGTCTAACATCTTAAACTTATGGTTGTCTTGGAAATATGCTCCAACCTTTAGCAACAATTTATCATTACCCTTAGCCGCCTCAAATTGAATTCCCAGCGGCATTTTCTGCTTGCTAACATATGTTGGTAAACTGATTGCCGGCTCTCCTGAAAGGTTGGC # Questionable array : NO Score: 3.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTACGTAGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 3 341294-341506 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJOT01000002.1 Lentilactobacillus buchneri subsp. silagei strain NK01 sequence02, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 341294 29 100.0 32 ............................. ACTTCGAGTTACCAGCCTTACGGATACCGTCA 341355 29 96.6 32 ............................C AAGCATATCAAGTCTTCTCGCGGGAACGCGGG 341416 29 93.1 32 ......T....A................. GATTTGATTCAATCATTTCGTTATCAGATTTG 341477 29 93.1 0 ...........AC................ | G [341495] ========== ====== ====== ====== ============================= ================================ ================== 4 29 95.7 32 GTATTCCCCACGTGTGTAGGGGTGATCCT # Left flank : TGTGCGATTGATTGGTTTTGTTGGTAAAGTTCAAAAGTATTCGTCCAAATTTCTAAAAACCAATGGCTTCATTTATCTGCTTTGGGTTAGTTTGGCAGTGTTAATCATTTCAGCAACATTGTATTCTCTTGCGGAGAACGTTTCGTGGGGTGAATCGTTGTGGTGGGCAGTCGCAACCGCAACGACTGTCGGTTATGGTGATATTTCGCCACATACCCTTGTGGGAAAGATTGCTGCGGTGATGCTGATGATGGTGGGAATTGGGATTATTGGCTCGCTTACGAGTGCGATGACAACGTTCTTTACCAATCGAGACAACGTGGATAATTCGTCCAAGATTTATCGGAAGCTTGAGATGATTGAGTCGGAGAATAGGGATTTGAAGAAGCAATTGGATAAGCTTGAGAGGAAATTGGATAAGTGATTGAATCGCAACTCAAAGTGATGGGAAATGAGTGATTTTTCATTTTAAAACGGCTTGGTTGCGGCGTTTGTTTAGT # Right flank : TTCTCCGCAGGGTGTGCTTTGCTTCATCAGTATCACAGTAAGTGTGGATTGATTCTAAGTATCTAGAAATGTCGAGGTTCAGTACGACTAAATAAATAGTATTGCACTGACTCATTAACTTGGGTCATACCTAATGCTATAAATATTGATAGGAGAACTAGCATGACAACACCAAAAGAGATTTTAGTTGACGGTTTACAAGAATTTGCCAAGAAAGTTGGCGGGAAGAGTCGCAATGGTAAAGAGCTTTTTATTACCAGAACTGCTGTTACGGATCAGCTCACACCAGACGGTAAGCAGTATACATTTATTTCTTTAATTCGAAATGATCAACAAGCTAGTGGTCCGTATTCTGGGATTTCCTTAAAAGTAAATCCGGGTATTAATCATTATCGAATTTCTTTAGATATCGGTAGTGAGGGTTTTGGAGATGACTACCAACTTGTGGCTACCCCTGGTACAAGAAGAAGGTTTGTTGAACTCCAATCTGTGATCAACGA # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTGTGTAGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.00,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //