Array 1 346-1934 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJZA01000058.1 Pseudomonas aeruginosa strain ATCC 33354 scaffold_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 346 28 100.0 32 ............................ TGCGGCGCTGATCGAGGAGGGCGGTTCGATGG 406 28 100.0 32 ............................ TGGAACGGGTGGTGGCGATGGTGATGGCGGCG 466 28 100.0 32 ............................ TGGAATGACCGGCCCGTCGTTGAACAGCACGC 526 28 100.0 32 ............................ AACCGCAGATGACGTTGGGCCGGGGCGTGCCG 586 28 100.0 32 ............................ ATGGACATTCCCTTTCTCTCCGACATTCTCGC 646 28 100.0 32 ............................ ATCAGAACTCCTCCTTTTCCATCAGTTGATGG 706 28 100.0 32 ............................ AAAATAGGCGGTACGCTATTCCCTATCTGACG 766 28 100.0 32 ............................ GCGAAGCAGAATTGGAAGGTTTCCATCAGCAC 826 28 100.0 32 ............................ TTCCAATTCTGCTTCGCGGGCATCGTTGGCAG 886 28 100.0 32 ............................ GTCGAAGAACGATCCGGGCAAAACGTTTTATT 946 28 100.0 32 ............................ TCTACCGTCAGCGGCAGGCGGGCAAGGCACCC 1006 28 100.0 32 ............................ TTGCAGTCACCGTCGCCGGAGATCGAGGAGCC 1066 28 100.0 32 ............................ GATATCGAGCGCTGCTGGGCTTCCATCATCAG 1126 28 100.0 32 ............................ TGTCCGGGCAGTTGGCCGTTCTGGAAGGCTAC 1186 28 100.0 32 ............................ TAGCTGATCAGCAGGCCGACAGTCAGGCCTGC 1246 28 100.0 32 ............................ TACCCGAATACGACTTGCGCGAGGAAGACGGT 1306 28 100.0 32 ............................ AGCATCGCATCAAATCGTGCAGAACACGATAA 1366 28 100.0 32 ............................ TGGTCGAGCAGTTCGGCAAAGGGGCCGTGGTT 1426 28 100.0 32 ............................ TTCACCTGGTCGCCGGCCAGGCTGATCACTGC 1486 28 100.0 33 ............................ TACAAGGTCATGGCGCTCGGCAACGTGGTGGAA 1547 28 100.0 32 ............................ GCTGTGCGTCGCCGTGGTCTGACGGTCGAATC 1607 28 100.0 32 ............................ AGCAGATACCCGAACCACTGGAGGTACATGCA 1667 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 1727 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 1787 28 100.0 32 ............................ AGACAATCCGGACCTGCCGCCCAGGACGATCT 1847 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 1907 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGCACTCGCCTGGGAAGGCGAAACAAGAGGTCAAGGCAGGCACAGAAAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGACCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCACGTAGGGCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 37248-38955 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJZA01000248.1 Pseudomonas aeruginosa strain ATCC 33354 scaffold_46, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37248 28 100.0 33 ............................ TGGCAGGACTGCCTGAAGCGCTACGACCGCGAG 37309 28 100.0 32 ............................ AGGCCGCCCACCATCGCCGCCAGTCGAGGATT 37369 28 100.0 32 ............................ ATGAGGGCCAAGGGCGCGCCTGCCAGCGAGTA 37429 28 100.0 32 ............................ AGCGCCGAGCAGGCGCATACGTGATCCCCGGC 37489 28 100.0 32 ............................ TGGAGCAGCACAAAGAGCAGGGCGGCAAGCCC 37549 28 100.0 32 ............................ TGTCTACCCAGCGTATTGGCCATTCCGTTGGC 37609 28 100.0 32 ............................ GCAAAGAGCGATCCGATGCCATGCGCGTCAAC 37669 28 100.0 32 ............................ TTCTTGGAAGGTTATCTGCTGCAAACGGCACA 37729 28 100.0 32 ............................ ACGGACGGTTTCGTGGTCTTCCCCCATGCCAA 37789 28 100.0 32 ............................ ACCCAGCCCCGCACCACGTCTTCCGTGATGTC 37849 28 100.0 32 ............................ ATCGCAGGACAGGGCAGAAATCATCAGGAAGC 37909 28 100.0 32 ............................ TTCATCGTGCCGATCGCGAACTGGTCGCGCGA 37969 28 100.0 32 ............................ GCATTGGGCAGGCCGACCAGCTGATCGATACC 38029 28 100.0 32 ............................ GAGACTTCAAGACGTTCCGGCGCGGCCGGAGC 38089 28 100.0 33 ............................ ATTGCGCCAGATCCCGAAAGCTCTACCCGAATC 38150 28 100.0 32 ............................ CGTGATGGGCGCCAACATGCCGTCGACACTCC 38210 28 100.0 32 ............................ TGAATGCGAAACTTCGTGCTGTAGCTACCCTC 38270 28 100.0 32 ............................ AACTGCTCGGCGGGCACCAGTTGGCGGTCGAT 38330 28 100.0 32 ............................ TGGTAGACGGGATATGGATCGGCGAAGTCCTC 38390 28 100.0 32 ............................ TGGTTACAGGCGGTCTGGATCGACGCCGGGCA 38450 28 100.0 32 ............................ TCGTCAATCATCGCGGGGTCCCAGCGATACAG 38510 28 100.0 32 ............................ GTGCCGCTGGCGTAGTTGACCGCATCGACGCG 38570 28 100.0 32 ............................ TCTTGGGAGTCCCGGCAGGTCAAGGGCCGCGA 38630 28 100.0 32 ............................ TCGAAAAGATCGCCCAGGAACACGCAGCGCCA 38690 28 100.0 32 ............................ GACAAGGACCGTCGCGACAAGACCGAACCCGA 38750 28 100.0 32 ............................ AACAGGCATTCACTGGGTCGTCATCGACAGCC 38810 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 38869 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 38928 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 29 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAAGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 50089-47480 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJZA01000248.1 Pseudomonas aeruginosa strain ATCC 33354 scaffold_46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 50088 28 100.0 32 ............................ ACTGATCAACGGTGCCCCCGGTGAGGGGCATT 50028 28 100.0 33 ............................ AGGACAGAAGAACAGCAACCTTCGCGCCGACTT 49967 28 100.0 32 ............................ GCGTTCCCCGTGCCGGGGTGCTGCCAACCATA 49907 28 100.0 32 ............................ TATCATAGAATATGCTGTCGGTAATGGTAGTA 49847 28 100.0 32 ............................ ACGTAGCGGATGACGGAGAGTTCTTGGGCGTA 49787 28 100.0 32 ............................ ACCAAGGGGGTTCTGGCGCAAGCCAGCACTGA 49727 28 100.0 32 ............................ TTGATGGTCTTGTCGAAGGAGCCTTGCTTCGG 49667 28 100.0 32 ............................ GAGCTCAAAGAAGGTAATGATATGACATTAAC 49607 28 100.0 32 ............................ TGGAAGACATCACGGAAGACGTGGTGCGGGGC 49547 28 100.0 32 ............................ AAGATTGGTCGTCGCCGCGTGGTGAACCTGCA 49487 28 100.0 32 ............................ AATGAGCGTTTTACACCACTAACGAGCTTTAC 49427 28 100.0 32 ............................ TGCACCGTATTCGCCGTGACCTCGACCGGGGC 49367 28 100.0 32 ............................ TGTAACGGTGAACCCCACTATTCCAGACTCTT 49307 28 100.0 32 ............................ GAATCCGCCGAACAGTTCTGGCCGTTTGTCTT 49247 28 100.0 32 ............................ TATTCGGTGAACGATGGCGGCGGGACGAATCG 49187 28 100.0 32 ............................ GACGACGGCGACGCGCTGAGGCTGGCTGTGAA 49127 28 100.0 32 ............................ CAGTCAGAGGGGAACGACCCGGCTCCGGCAGA 49067 28 100.0 32 ............................ AATACGTATAGGTCGGCTCCAGTTTCATTCTT 49007 28 100.0 32 ............................ ACATGCGACCACCATCGAGAGGAAACGTGCTA 48947 28 100.0 32 ............................ TTAGGCCTTCTTAACGCCGCGCTTGCCCAGGT 48887 28 100.0 32 ............................ AGCATGTTAGCCGCCTCCGCTGGGATCATTGC 48827 28 100.0 32 ............................ ACTTACCGGGTAGCTGTACCTGATGACGTACT 48767 28 100.0 32 ............................ AAGACCAGCGAGATCCTGGTCAGCCACCTGGC 48707 28 100.0 32 ............................ ATTGCTGGGAGACGTATTCGGCCAGTGTCATG 48647 28 100.0 32 ............................ AGCACGGCATTGCGGAAGTCATCGGAGCCAGC 48587 28 100.0 32 ............................ TTCGGACACCAGCACCACGCGTGACGTCTTGC 48527 28 100.0 32 ............................ CACGTGTCCAGCCGACACTAACAACCCTGGAA 48467 28 100.0 32 ............................ GCCAGGTGCGCGCGCGATGACGGTGAGCCTTC 48407 28 100.0 32 ............................ TTGACCCATCCCAGGATGTAGCGGACGACCGG 48347 28 100.0 32 ............................ TACGGACCCGACTGATCCTAAAGACCCTGGTG 48287 28 100.0 32 ............................ ACGGAAATTCTCACCCAGGCCAGCAGGCGTAT 48227 28 100.0 32 ............................ GTTGGCATTGACGAACTCTACATCGACGCCGT 48167 28 100.0 32 ............................ ATGTTCTACAACGCCGAGGAGCGCAGCTGGTT 48107 28 100.0 32 ............................ GTGACGGTCACGCATGCGCAGCATTTTGAAGC 48047 28 100.0 32 ............................ ACCTGCGCGTCGTGCTGGTCCTTGAAGTAGTT 47987 28 100.0 32 ............................ GGCTTGTCTGGGAATCGTGCGCGGTCTTCGAG 47927 28 100.0 32 ............................ TACAAGTTCAAGCGCGACGGCAAGGAATGGGA 47867 28 100.0 32 ............................ GACAAGAAGCTCCAGGGCACCGGCGTGAAGAT 47807 28 100.0 32 ............................ GGTGTCCTCAACGCGAAGCTGACCGAACTGAA 47747 28 100.0 32 ............................ ACCCAGCGCCGCCGGGATCTTCTCCGCCACCT 47687 28 100.0 32 ............................ TGATTCAGGAGTGCTGGCAAGCGGTTACAGCG 47627 28 100.0 32 ............................ AGCAGCGGCTCCAGAAAGAGGGGCGCTGCCTG 47567 28 96.4 32 ..C......................... TTCGACGCCGCCAGGGTTGCCGCATCGCCGTC 47507 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 44 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //