Array 1 1862-3662 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBED01000005.1 Ligilactobacillus salivarius strain L21 L21_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================ ================== 1862 36 100.0 30 .................................... TCAACTGAACGAAAGCATGGCTAATGCTTT 1928 36 100.0 30 .................................... CAACAGTGGTGTTTTGAAATACAGCCGCTT 1994 36 100.0 30 .................................... AACTAAAACCAATCTGTTGCTCAAACTCAC 2060 36 100.0 30 .................................... GAGGCTTATGTCATAAACCCTCTAATAAAT 2126 36 100.0 30 .................................... GATAATAGCGAAAAGTTTACCTTTGTTTAT 2192 36 100.0 30 .................................... TCATGCCAGAGGGCTTAGCAGCGTTCCGGA 2258 36 100.0 30 .................................... ACGTTTAGTTTCTGGAAATGTGACTACTAT 2324 36 100.0 30 .................................... TTATTCACAAAGAAAAATGTGCAACTTTTT 2390 36 100.0 30 .................................... TTAAATTACGCTCTGCTACATAACCAGATT 2456 36 100.0 30 .................................... CTGCCAAGTTGAGATTTAATTTGTTTGCTA 2522 36 100.0 30 .................................... ATTCAGAAGGTGCTGTTTACCAAGATTTCG 2588 36 100.0 30 .................................... CAGAAGCGTTACACGTTGGATCAAACATTT 2654 36 100.0 30 .................................... GAGTAAACTATTTTACACAAGAAGATTACT 2720 36 100.0 30 .................................... AATCCAATTTTGTTCTAAGATAGCTGCTAA 2786 36 100.0 30 .................................... ATTGAGTTTTGACAAAGCTGAAAAAATTGT 2852 36 100.0 30 .................................... GAGCGACTAAAGAACCTTTAATGATATCTC 2918 36 100.0 30 .................................... AAAAATTTAAAGAAATGTCACTAGAAGAAC 2984 36 100.0 30 .................................... ACTAAACGTGATAGATTCGCCTTCTTGAGA 3050 36 100.0 30 .................................... AAGCATGAAGGCTGTAGAAACTTTCATCGA 3116 36 100.0 30 .................................... TGAAACTTCTGGTGGTGCATTGAAGAAAAT 3182 36 100.0 30 .................................... GACGATAAGATAGATGCTATTACAGATGCA 3248 36 100.0 30 .................................... CTGGCAGAAATTACTTCTCCTCAACTAGCT 3314 36 100.0 30 .................................... AAGGTTTCCCGCGTCATCCCGATTTCATTG 3380 36 100.0 30 .................................... TCATGCTAAAACATTCATGACAACGACTGA 3446 36 97.2 29 ..................................A. GGTTCTGAGCCTAGTTAGAATGAATAGGT 3511 36 83.3 80 ..........A..A......T......A....T.T. TTGACTTTGTCTCCACAGTTATATATTCTAATTTCAGAATATATTAATTGACTATTTTAGAGTGGTTAGTTTAGGTATTA 3627 36 80.6 0 ..........A.........T...AG...CG..G.. | ========== ====== ====== ====== ==================================== ================================================================================ ================== 27 36 98.6 32 GTTTCAGAAGTATGTTAAATCAATTAGGTTAAGACC # Left flank : AACAGACCGAATTAGTAAAAAGTATATGAATGTATTGATCAAAAAGATTATTGAAGACATCACGGATGATGAAAGACAAGCAATACTAAAATCAGTAAATGGTTTGTATGATCGTATTCGAGAGGTTTTGTATAAAATTGATATACCCTTACAAGTAGATTATGATAATGATTTAACAAGACTATTCAAGTATTGTCAGGTACATACAGAGGCATTGCTATGGAAAAATGCGTATGATAGAATATCTTCAGATGTTAAATTACATGTGGAACTAAACAGAGAAAGAATTATAGGTCTAACCAATGTCGCACATTATCTCACTAAAGAAGAGTTTCAGGAACTTGTGAACCTTGTTAAGGTGACTAACGCATCAATGTTTATAATTGAATTCACAGAAAAGAATGGTCAGAGATTCTTTGAAAACTGTGATAATTACTATATTGATGAGGATTATATTGATTGGTACTAACGAATAGTTAAATTTTGATTATAAAGTAACT # Right flank : CTAAAATACAAAAAATATTTCATAATATTTATAAATCTATCAGAAATTTTCTGGTAGATTTTTTTAGTGTAAAAATTTTTGAGTTTAAGATATATTATGGTTGATAATGTAATATTATATGATATATAATATAGTTGAAGATAAGAAATAAAAGAAAGTGAGGGATGATGATGAAAATTCAAGTTAGTTCTGATTTACTAGATGGTTTAGTATTGGCGCTTTTAGATAAGCAAGATTATTATGGATACTCATTGACACAGGATATGCAAAGGGCAATTTCAATTTCAGAATCAACACTCTACCCAGTATTACGAAGGTTAAAGAATAATGGTTTATTAGAAACATATGATCAATCATATCAAGGGAGAAATCGTAGATATTATCGCATAACAAATAGTGGGGAAGAACATTTAGGAAGAGTTAAAAAAATGTGGAGCGACTACAAGGTTAGTTTAGATTCAATTTTCGAAAAAAACTAGGGAGGGGGAATAATAATGAAC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGAAGTATGTTAAATCAATTAGGTTAAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 85553-86543 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBED01000015.1 Ligilactobacillus salivarius strain L21 L21_contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 85553 36 100.0 36 .................................... CCTTACTTGATTTTTTGAATTCATCCAAAATACTTG 85625 36 100.0 37 .................................... AACAATGTAACGTGGTACAATTTGTGATACATCTTTC 85698 36 100.0 36 .................................... AATAATAATTTAGTTTTAAAAGAACCGTGTTCGACT 85770 36 100.0 36 .................................... GAAGATAATGGGAAAGATTGGTTTATTAAGTTAAGG 85842 36 100.0 38 .................................... CTTGTCTTGTCTGGTGTAATTGATTCCACGTACCAAGC 85916 36 100.0 35 .................................... TCTTACTCATTTCAATCGCTCCTTTTAGTTTTGCA 85987 36 100.0 35 .................................... TTTAGTGAATTCTATTTCCATTTTTTATTTCTCCT 86058 36 100.0 36 .................................... CCTTACTTGATTTTTTGAATTCATCCAAAATACTTG 86130 36 100.0 37 .................................... AACAATGTAACGTGGTACAATTTGTGATACATCTTTC 86203 36 100.0 37 .................................... ACGACAGCCTAATACCAGAGCTACTCCTTTCATTTAA 86276 36 100.0 42 .................................... TTCGTTCATTAGGTTTATCAATCTTTCATCAAATTTCATTTT 86354 36 97.2 41 ...............T.................... TTACCACCAGAAAAAGCAACTAAGATATTATCAAATTCATT 86431 36 97.2 40 .....................G.............. CCTGCTGTTGTTAGTTCGATCATTTTTCTTCATCCTTTCG 86507 35 88.9 0 ............................-....TCT | TT [86537] ========== ====== ====== ====== ==================================== ========================================== ================== 14 36 98.8 37 AGTAAGAACATATCTCCGAATATAGGAGACGAAAAC # Left flank : CAGGATTGAAATTACCGACTTTCATTGAGGAAGGAAGATAAGTATGATGCTATTAGTATGTTTTGATTTACCAAGAGACACGAAAGAGAATAGAAAAGAAGCAACTAAATATCATAAGAAATTAGTAGAATTAGGTTTCACAATGAAGCAATTTAGTGTGTATGAAAGAGAAGTAAGACAAAATTCTACTAGAGATAGAGTAATTAAAGTGTTAAAAGATAGATTACCTAAATCAGGTGCAATTACTTTATATTTACTTCCTAACGAAGTAAATGATTCACAAATAACGATTTTAGGAAGTGAGTCTATAAAGAAAACTGTTAGGAAACCTCAATTTATTGTGTTATAATACACTTACACTGCTGTAAGAAACAGTAGTACAAATAAAAACTTGTCTGAATTTTGACCAAATAATACTTATTAATTTAACCTATTGCCCGTTTAGGGTACCATTAAAAATGTCAATAATTGTTGATATATCAACTAATTGATCAAAGAGT # Right flank : TAATTAAAGTGATAAGAAGGAGAGTAAAAGTTAGAAAAAATAATATATAATATAGGTAATTAATTAGAAAGTGGTGTAATTATGACAACATTAATATCATGTATTGGTGATACAGATCCTATAAGAAATAGGCATGATGGAGCTTTATTGCATTTAGCAAGAGTATTTCGCCCTGAAAAAATATTATTAATATACTCTGAGCGTGCTTTATTGAAAGAGAATAATATCTTATTAGCGTTAAATTCTATAGAAGGATATAGTCCTGTAATAAAAAAAGATGAGAGACTTATTTCCGATAGTGAAGTATTTATTTTCGACAAAATATATGAAATATTAAATAATGTAGTCTTAAAGTATTCTAGAGATAATGAGGATTTAATTTTGAATTTATCTAGTGGAACTCCACAAATGAAGTCAGCTTTATTTACTATTAATAGATTGAATGATATTAATGTTAGAGCCTATCAAGTAATAACACCTAGTCATTCTTCAAATGAAGG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTAAGAACATATCTCCGAATATAGGAGACGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //