Array 1 217795-219348 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYAH01000237.1 Escherichia coli strain ECOR29 ECOR29_contig_41_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 217795 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 217856 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 217917 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 217978 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 218039 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 218100 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 218161 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 218222 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 218283 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 218344 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 218405 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 218466 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 218527 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 218588 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 218649 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 218710 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 218771 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 218832 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 218893 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 218954 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 219015 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 219076 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 219137 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 219198 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 219259 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 219320 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 234850-235061 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYAH01000237.1 Escherichia coli strain ECOR29 ECOR29_contig_41_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 234850 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 234911 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 234972 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 235033 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GCGCACCGTTGCGTCGAAAAGGCGCTGGAGATGTGTTCCCCGCGCCAGCGGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //