Array 1 16260-15894 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFHCM010000021.1 Ruthenibacterium lactatiformans strain 4011 Scaffold_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 16259 36 100.0 30 .................................... CTGACCGTCACCATGCACATCCAGACGGTA 16193 36 100.0 30 .................................... ACAATTTATAATTTCGTCCGTATCGTCTCG 16127 36 100.0 30 .................................... CAGCTCTGTCTGCTCCAGCGCACGCACATA 16061 36 100.0 30 .................................... GCCAAAAGCAAAATGCTGCAAGCTATGGCA 15995 36 100.0 30 .................................... TATGCCGGTTTGCAGATGAAAACGGTGATT 15929 36 72.2 0 .......................CC..CG.GGTGCG | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 95.4 30 ATTATACCATACCAAGAACTGTTAGGGAACTACAAC # Left flank : GGACAGCACCACAGCGTGGCTTACGCCATGGAACGGCTGGTGCAAAGCCTGCGCACCGGCATGGAAAAGGGCGGCGCTTTGGCGCTGCCGAAGCTGCTGGCATGGCAGCCCCACGGTTATGAGTAGATTTATGAGAATGCTTGTATTTTTTGACCTGCCCGTCCAAACAAAAAAGCAGCGGCGGGAAGCCACTGCTTTTCGTAACTTTTTGATAAAGGATGGGTATCACATGCTTCAATACTCGGTTTACGCCCGCGTATGCAACGGCAACGATGCCGTGACAAAACACCGGGCGCGGCTGACAGGGCAGCTGCCGGCCAATGGCGCTGTGCGCCTGTTGGTGGTAACGGAAAAGCAGTATCAGTCGATTGAGATATTGCTCGGCCCATTTTCCCCGGCGGACACACCCTTTGCATGTGAACAGCTTACGCTGTTTTGATTTTTCGGAAAGAACAAAAAGCGCTTCAGGCCGCAGCCTGAAGCGCTTTTTGCAACAGTCT # Right flank : CTTTTCAGATTTTCTGCACGGTTAAGATATACCCGATGTTGCCATAAAGGAACCAGGCTTTTTCGAGCGCCTTCTCCCGCGTTGGAGCGTTTAAAAAACGCGTAAACATTTTACCCGTCGCATGTTCTTTTCCCCATACAGCTCAGGTCACTGCCTTCACCCGCTCTTTTCAAAATGCCACCCGGATATTTTCCCCGCGAAGCCCCCTGCGCAGCCGCAACCTCCAACTGCCGCGCTCGGATGCATCTCAACTTTACTCTATATCTTATCTTCCAACGTGTCAAATTATCAACACACAGGCGTTCTTCCTTGCAAACCGCCCCGTTTTTCGGCTTTTTCGTTGCCGCCAGGCCCGATCCATTCATAAAACGGACAGCCCCGCCGTACACTTCACTGGAAGCCTGCGGCGGGCTGCAATATTCTTAAGGCAGCACCGCACAATTCACAGCTGAAGCCTTAAGCGTCGCCTCGCTTGCAGATTTTCCGGCAACTGTCACAAA # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATACCATACCAAGAACTGTTAGGGAACTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 180887-178437 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFHCM010000001.1 Ruthenibacterium lactatiformans strain 4011 Scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================================================================================================================================================== ================== 180886 31 83.9 21 A.....G.T.A................A... AGACGCAGAAGGTCGATGTCC Deletion [180835] 180834 31 77.4 19 C....G.....TAT...C...G......... AGGCGCATCTTGGTATAAA Deletion [180785] 180784 31 74.2 164 A...T...TCA...A......T.....A... TATAATCATCACCACCTTTGTTCTGAGTGCGAAGGGACAGCGAACAGAAAAGTGCTGGTCTCTTCGCACTTATCTTGACTTGTGTCAATGCAATCCCAAAGTAAAATCGTGTTATCAAAGCATACATGTTGTGCTTTGAGTTGTCGGGTTGCGCAATATATGGA 180589 31 100.0 37 ............................... TGAGAACCGCTGCGTGAAGGAGTAAAGAGGAGGGCAA 180521 31 100.0 35 ............................... TCATATTGTCCAGGTATCGCACGCAAGCAAACACG 180455 31 100.0 37 ............................... TAACGCTAAACTGGCGGAGGCCGCCACGGAAAGCGAG 180387 31 100.0 37 ............................... TCTCGCCCTGTTTGGCATAGCTGCGATCAACGGCCAG 180319 31 100.0 35 ............................... TAACTGCCCCGCTAAATGCACCAGTGCCAGCAACT 180253 31 100.0 36 ............................... TCGTGTACGGACGGCCTACCCCAAGGGGCGCAAAGC 180186 31 87.1 34 ........TCA................A... CGCACAAACCTTCACACGGGTAAAGATGCCCCGG 180121 31 87.1 35 .......T.........CA........A... CAATGCTTTCTTCTTTCTGGCTGCTGCTGGAATAC 180055 30 90.3 68 .........-AT................... CATGGTTTAAACCGCACTCCTGTGGATTGTTGATTGTCGCAGGCAATTTGCATGCACTCTCCTGATGA 179957 31 74.2 35 A...T..TTCA...A............A... CAAGCTGAAACATTGTCATGAGCATTACAAGAGAG 179891 31 87.1 35 ........TCA................A... TCGTGGGATTGACGCATTCTTTCATCAGGGCAATC 179825 31 100.0 36 ............................... TGTTCGGCCTGTCGTGTCAAAAACGGCGCTGGCCTC 179758 31 83.9 23 .........CA........T.T......G.. TCAGGGAGTGGGTGGATGTACAG Deletion [179705] 179704 31 74.2 35 ..T.TG.T..AT.....C...T......... TGCTCCGAGGGTCGCAGAGCCTACGATGACCTGCT 179638 31 90.3 34 ........TCA.................... CGGCAAAAAAACGTGACCGGCCGCAACGGCTGAT 179573 31 77.4 35 .GTA..TT......T....A........... CCGGGAAGAAGTTTCGGCCCCCTACAATCAGGGCA 179507 31 93.5 35 ....T......................A... CCTTTGCGTCGGCTGCGCAAGGTGGTTATCTACCC 179441 31 96.8 34 ..........T.................... TGCAAAAAGGATGAACCCATCAAGCAGTTGAAAC 179376 31 87.1 28 ........TCA..........A......... TCACCATAAAAAGGCCTCTGTGGCAAAA 179317 31 74.2 35 A........AA.AT.....T.G....T.... TCCCGGAAAGTAGGTTATAATAGCTACTCTGGTCT A [179308] 179249 31 77.4 24 AG......TCATA.................. TAAATGGAAATACACTGGAAAACA CGCGTGA [179228] Deletion [179195] 179187 30 80.6 103 .....G...-A.AT............T.... TGTCCAATCATTTGCAGATGTAAACGCAGACTACATGCCGCCTCTGTACGCAGCGTGTGAATTGAAACAGCCACCACATACGACATATTACATTGATGGTGGC 179054 31 74.2 33 A...T.T.TAA..........T.....A... CGACAACCACACGATGTCCTCCGCGAGCGCACG G [179036] 178989 31 93.5 36 .C...T......................... TATCTATTGACTCGCCCCCTCTCTGTGTGCGGGTAG 178922 31 90.3 34 ........TCA.................... TAATGTCTCAGTGTGGGCGCTAAGTAATACTTCT 178857 31 83.9 35 A...........A.....T..T.....A... CGAAGAAATGTTCTTTTCACTGCATCAGCTGCAGT 178791 31 77.4 37 .C..T...TCC.A.A................ TGTAGACCCTGCAATTACCCCGGCTTTCCCGGAGAAG 178723 31 87.1 33 .........CA.TT................. TCTGGCAAATGCGATTATTTTGGCAATCCAAAT 178659 31 83.9 35 ........TCA...T............A... CACCTCGGGGTTTTCTTTCGCTTTGCGTTCGATGG 178593 31 96.8 35 ............A.................. TCCGTAGCGATTGTAGTAGACTTTAATCTCACGGA 178527 31 96.8 30 ..........A.................... TATATCCCAGCATTTCAAGGATGTCCTTGT 178466 30 74.2 0 CG...T..A....-.A.....T.....A... | ========== ====== ====== ====== =============================== ==================================================================================================================================================================== ================== 35 31 87.3 40 GTCGCACCCTGCGCGGGTGCGCGAATCGAAA # Left flank : TCTCTGATACCGCATACTCTGCTGCGATTCGCGGACCCGTTCAGGTCACGTTCTGCGATAGCGTACACGATATCGAACCTGAGCGTCTGACCCTGACCCGCTGTGTTGCCACCAAGGACAACGAAGATGAGAAGAATCGCACGATGGGCGACCGTTGGATTGTGCCGTATGGTCTGTACAAGGGTGTTATTCGGGTTTCCGCTGAGGTCGCAAAGAAGACTGGGTTCTCTGCGGATGACATGAGTTTGCTGATTGAAGCCCTGGAGTGGATGTTTGAGGAAGACCAGAGTGCTGCCCGTGGTCTGATGACCATGCGAAAGCTGGTCGTGTTCGAGCATTCCACTGCTCGCGGAAAAGCGCACTTGTCCTCGCTGATGGACACTGTGGATGTAAAGCTCTGCAATGGGATGGATGCACCGAGCCGGTATGAGGATTACGAGGTCGGGGTGCGCGGTGAATTACTGCCCCCGAACGTAAAAATGCATGTTGTTGTTTGAGTT # Right flank : TAGGGCCACCAGTGAAAAGTAAGGAATCAAGCCGCTGCGCCCTCTTTTCTTTCCCCGAAAAGTGCATACAATATTGTTCGAAAGCTGATGCGTGACAAAAACGGCAGGTTTATGCCGCGTATTGCATTTCGAACAATAAAACCGGTAGCATGCCGGGCACAGAAGGGAAGAAAACCAAATGAAGAATTTCAAACGCGCCATGTCGTGCGCAATGGCTGTGGCTATGGCTCTGAGCTGCGCCGCCGTCCCCGCCTTCGCGGCCGAGGACATGACTGAGCCCAATCCGGTTATCGAGGCTCATCCTGATGATGGTATGAGCCCCACCAAGGTCGTTACCCCCATCGGTCAGAAGACCTTCTACAAAATCAGCGGCGACCGCGTGATTTACACCGACCGTGATGATGGCACCGGCTGGGAGGCCGTTCCGTCTCAGTACATCAAGGGCAGTGAGTACAACGTGGGCAACGTTGATTACGGCATTTATGCGACTTCCGATGGCG # Questionable array : NO Score: 4.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.36, 5:0, 6:0.25, 7:-0.65, 8:1, 9:0.26, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGCGCGGGTGCGCGAATCGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.10,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [65-39] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //