Array 1 3355-3687 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKHT01000307.1 Streptomyces alkaliphilus strain DSM 42118 NODE_307, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3355 28 100.0 33 ............................ CGTTCCCCCGGCGGGATTCCTGCGCGGCCTCTA 3416 28 100.0 33 ............................ GTCCGGCCGGGGCCGGCAGCCGGGGGCGACCGC 3477 28 100.0 33 ............................ CGGCACGCACGTCCTGGTCGTGCTCGTGCTGCG 3538 28 100.0 33 ............................ TTCCATTTCGCGGGACCGGTTTCCCTGAATACC 3599 28 100.0 33 ............................ CCGATCCGACAACACCAGGGCCTCCCCGGCCGA 3660 28 96.4 0 ..........................T. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 99.4 33 GTCGGCCCCGCACCCGCGGGGATGGTCC # Left flank : CCGTACCGCCTCGGCCCCCTCGGGCCACATGCGCTGGAAGGCGGGCGTGGCCTTCCCGTAGTCGTGAACGCCGCAGAGCCAGGCGAAGAACCCCCGCCCCTTCCCGGGCCCTCCCGCGATGTCGTCGAGCACCAACCGGGTGGACGGGGCCAAAAACCCGTCCCACATCCGCTCGGCCACGGCAGCGGTGTCGAGGAGATGCGACAACAGCAGGTTCTTCCTGCCACCGGCCCTCTCCGCCGACTTCCCCCACAGGGCTCCCAACATCTCCTCGATGTCGGGGGTCGCCCCGCCCCCATCGTCACTCATCGTGCCACCCCTGGTACAACTGGTGCATCGCTTTCGGGGAGAGACACTAGGACACGCCACTGACAACCGAAGGCGATTCCGCCGAACCGACGTTCTTCGACCGCCGGCTACGCTTGGATGCCAGGATGGGACCCGGAACCGTACCGAATGAAAACGGCCTCCCGGCCGGGTAAAGCAGCAGGTCAAGAAGT # Right flank : CGGGTGACCGGTGGTGCTTCCAGGCTCGTGGACGGCGCTTGGATGGTCCCAGCGGGACACTCTTACCCCCCGGCGGAAAGATGTGTCGCCTGTTGCCGGGCCGAGAGGCCGGCAACAGGCGACACGCCCCGTGCGTCTGACCGCTCAGCTCTGCGTCACGAAGCGGACGAACGGGTCCCAACCCTCGTGGCCGACCGTGAAGGCCGGGCGGCCGGTGTCCTTGGAGTCCCGCACGTGGACGGCTCGTTCGGCGGTCGCGACCTCCACGCAACTGTCGCCCTCGCTGCCGCTGTAGCTGGACTTGAACCAGGCGAGTTCCGTGGTCCCGCTGCTCATAGCTCTCCTCGCAGTCGCTCCAGCAGGTCCCGGGATTCGTTGGGGCTCAGGGCCTGCGAGCGCAGTGTGTCATAGCGTTGGCAGAGCGCACTCACCTCTTTTCGGTCCGAGATCAGGCGTCCGTTCTTCTGTCCCTCGGAGTAGCCGAGGCGCCGTCCGTCGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12900-10063 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKHT01000045.1 Streptomyces alkaliphilus strain DSM 42118 NODE_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 12899 29 100.0 32 ............................. TGGCCCGGGAGGGCCGTGACACGGCCGACACG 12838 29 100.0 32 ............................. CGTGGGCTTCTGCGTGCACCACAGCAGGTCGA 12777 29 100.0 32 ............................. CAACCCACCGGCCCGGCCCCCACCCCAGGGGC 12716 29 96.6 32 ............................G TCCTCGTGCCTGCCTCCCCCCGCTTCGCGGCG 12655 29 100.0 33 ............................. TCCGCGTCACCTTCGGCGGTGGGGTGGCAGCGC 12593 29 100.0 32 ............................. GCCGACCCGGACTGCTGCGACGCGATGAGCTG 12532 29 100.0 32 ............................. CCGGAAACTCCCTGGTCAGGGGTGGTTTCCGC 12471 29 100.0 32 ............................. GCGGCGCCGGCGCCGGTGAGGGCCTGACCCTC 12410 29 100.0 32 ............................. CACCGGTCGTGGCCAAGAGGCCCGGATCACGG 12349 29 100.0 32 ............................. GGATGCTCTCGGGCCTCGCGGCCTCGCGGCCT 12288 29 100.0 32 ............................. TGACTGACGACCAGCTCGACACGATCGTGCAA 12227 29 100.0 32 ............................. CAGGGCGAGGACACCTATCACGTCTGGAACTT 12166 29 100.0 32 ............................. GAATTCGAGGCAGAAGGCCGGGAGATCGTCGG 12105 29 100.0 32 ............................. GTTGAGTTCGGACATGCGAGGGCTCTCCTCAG 12044 29 100.0 32 ............................. CGCGGGGGATGGTATTCGCGTCCGGGTCCTGA 11983 29 100.0 32 ............................. CTACACCCTAAATTAGGGTGTGCTCAAGTTGT 11922 29 100.0 32 ............................. TGGCCCACCGTCACGTCATCCGCCAGGCGCAG 11861 29 100.0 32 ............................. CGTGGCGAGCAAGCTCGGTGGTCCGCGCGGGA 11800 29 96.6 32 ............................G AGGACCCCACCCTTCAGCCTCATCCTCGCCCG 11739 29 100.0 32 ............................. CGCTGGACCCTCGCCCCCACGCGGTAGCCGTC 11678 29 96.6 32 ............................G CGTCCGCTCGGGTGCGGGTGTCCACGGGCGGC 11617 29 100.0 32 ............................. TGGTTCCGTTCTCCGCGCAAGCGGATGTGTAC 11556 29 100.0 32 ............................. GCCGGGGTGAGAGCCAGAAGCACCTCGCTGCG 11495 29 100.0 32 ............................. GCCCGCCCGGCTCGCCCCGGCGGGACGGCGCC 11434 29 100.0 33 ............................. GGCGCCCCACCCCGTGAGCGGGGCGGGGCGCCG 11372 29 96.6 32 ............................G GCGATCCCTCTACCGGAGTCGCTTCCATGATC 11311 29 100.0 32 ............................. CCTCAGGACATGCGCGCGGCCGTCGAATGGTT 11250 29 100.0 32 ............................. ATGGAAGGGGGTTTCTGACATGGCGATCGACA 11189 29 100.0 32 ............................. CCCGCCGACATCAACAGGAAGTAAGAGGTAGC 11128 29 100.0 32 ............................. CGACCCACGAGACGATCGGAGAGGCCCGTTGG 11067 29 100.0 32 ............................. AGGGCGGCCGCCGTGGTTCCCCGGGCCCGCGG 11006 29 100.0 32 ............................. TGACGCGGGTGTCCGCGGATATCCGTACGGAC 10945 29 96.6 34 ............................A CGGCACGTAGGGCTCCCACGTGCCGGACAGGCTG 10882 29 100.0 32 ............................. GTCGACTCCCTCACCTATGCGGAGGATGACCT 10821 29 100.0 32 ............................. GGCTTCCCGGAGGACTTGTTCAGGGTGTGAGG 10760 29 96.6 32 ............................G GACTCGCTTTCGCTACGGCTCCCCCACACGGG 10699 29 100.0 32 ............................. CTGGATCGCCGGGAGGCGAAGAAGAAGCACGC 10638 29 100.0 32 ............................. AGCCCGAGCGCGTAACCGACCTGGCCGAGATT 10577 29 100.0 32 ............................. AGCCGCCCGGCCCTGACCCTGTCCTACGGGAA 10516 29 100.0 32 ............................. GGGGGATCGTCAAAATCGACAATTCCGGCCGC 10455 29 96.6 32 ............................T CCCACGTCGGGCCGGCGCGTATCAGCGGCTCA 10394 29 100.0 32 ............................. TCTGTTGTTTCTTTCCCAAGTGACCCCGAAAT 10333 28 93.1 32 .........T...........-....... GCCTTCCGGGGGTAGTGCCACCGACCGGCGGG 10273 29 100.0 32 ............................. AGAGGTGGGGTCTTCCTTAGACGCGAGGGATC 10212 29 100.0 32 ............................. TTCGCCCCCGAGCACCACCTGACGGTCCTGGA 10151 29 100.0 31 ............................. GTGGTGCTGCGGGATGTGCCGGTGTGGGGGT 10091 29 93.1 0 .........A.C................. | ========== ====== ====== ====== ============================= ================================== ================== 47 29 99.2 32 GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Left flank : CGCCAAAACGACGACCCCACCCCCCGCTTCCCGACTGAGCCCTCACGCACCTTGGATACGCCCCGCTCTCGTACCGGAGCAACAACGAACAAGGCTTCACCTCCGAGAGCTACGAGCATCCCTGGCACCCCATCGCCCGAGCGCCGGGGGACCCACCGGAGAGACATGCATCCCGAACGCTCCGGGCCAGGGTAGGGGGCAAGGCGGCTCGCCAGCGGTGCATCGGAAACCGGTAAAGTCGAAGAACCCACTCAGCCTTCAGATGGAATGTCAGGATCACACCTTATGCCGGAATCTCTGCTAGTGAGTAAAAACAGGCTTCCCGCGAGATAAAGATGCTGGTCGGCTCC # Right flank : ATCCGTCAGGGGCGAATGAAGACCTTGGGTTTCGGCGGCAGCGTCCGCCCCGAGGTTCGGCACATCATTCGCCCGGAGCCGGCGGGAGGTCACCGTTCACCGGAGAGCGGCTCTGATATCCCCGTGGGCCAACCCTTCTCGGTGACTCACCTTGCCGAACGTGTTCGCATGGATTAGACACGCAGTGTTCGCTACGCCAGAACCACGACGTGAAGCGAAGAGAGCTCATTCGGACGCTGAACATGCTGGCAGCCGAGAAAGGAGTGCGCTTCGCCCTCGAGCGACAGGGGAAACACGAGATCTGGTCCTTCGGCCCTCTCACCATCCCCGTCCCGAGGCACAACGAGATCGCCGAAGGCACAGCCAAGGCGATCATCCAGCGAGCTCAGGACGTCGAGTCCTGAGCCCGCTGGGCCCATCGCCCGAAGGAGAGGACTTCCCAATCGTGATGTCAAGCCGCTGCTGTGACGGGGGGTGAATCTTGATAGCGCTGTCCGTCA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 128-794 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKHT01000466.1 Streptomyces alkaliphilus strain DSM 42118 NODE_466, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 128 29 100.0 32 ............................. CCTCGACCGCGCACTCAAGGGCACCGCCGTCT 189 29 100.0 32 ............................. TCCATCCCCGGAGCACCGTCCGTCTCCCGCCG 250 29 100.0 32 ............................. CAGCAGCCGACCGACACAGCACTGTCGGCCGT 311 29 100.0 32 ............................. CTGGCTGGGGGCCCGGGTGGACAGGCGGGCCG 372 29 96.6 32 ........................A.... GAGCTTCAGCCGCTCGTTCATCTCCTCCACCA 433 29 96.6 32 ...T......................... AACACGGGTGACTGGATCATCGGCTGGTTCAA 494 29 96.6 32 ...T......................... CAGGCAGCGTGAGAGGAGCGGCATAGCCAAGC 555 29 96.6 32 ...T......................... GGGTACCGCTCCTCGTCCACGCCGGGCGCCAC 616 29 93.1 32 ...T......G.................. GAGGGGACGCCGCGGTTCGAGTTCCGGGGCCA 677 29 93.1 32 ...T................A........ GGGCTGGTGTACGGCGCCGGGTCCGGGATCGG 738 29 93.1 0 ...T........................T - Deletion [767] 767 28 72.4 0 .CC...G..-.T...T.......TT.... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 94.8 29 GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Left flank : GAAACCGGTAGAGTCGAAGAACCCACTCCACCTTCAGACAAAACAACAGGATCGCACCTTATGTCGGAATCTCTGCTAGTGAGTAAAAACAGGCTCCTCGCGGGATAAAGGTGCTGGTCGGCTCCTGG # Right flank : CTGCTTTCAGGGACCCCTCGGGACGGGGGTGGTGACCCGCCCCGGCTTCCGCTCCCTCGTCTACGGCGTCACGGCTCGGAGCGCCAACTCCCACGGGTACTCGCGGATTCCGGAGCCGGGTTCGTTCGGCACGAATCCCTCCTCTCCGTCGTCGCCCAAGAGGACGCGGACCCCGGCCTCGCGCAGTTCCGCCACGGACCGGCCGAACCGGGGGTGCCGGGCCAGGACGGTGTTGACGCACGGCAGCACCACCAGGGGGACGCCGCGGCCCATCATCTCCACACCGATCCCGACGACGTGGGAGTGCGTCAGGCCCAGCGCCAGGGCGTTGATGGTGTGCAGGGTGGCGGGGGCCAGGATCACGCCGTCCGCTGCCGGCCAACCGCCGCCCTTCGGCTCGTCCGGGCGTCGCCATCGGGTGCGCACCGGGTGCCCGGTCGCGTGCTCCAGGTCCTCGACAGCTTGCTCTCCGAGCCAGGCGGCGGCGGTGGGGGTGAGAG # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:-0.26, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGGTGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3468-4030 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKHT01000050.1 Streptomyces alkaliphilus strain DSM 42118 NODE_50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3468 30 100.0 37 .............................. GCACTGACCGGGGTCGCCCCCAACACGGTCCGCGCGT 3535 30 100.0 38 .............................. GGGAGTCGGCGGGGGTGCCAGATGTACCCCCATCGCGG 3603 30 100.0 36 .............................. ACGTCCTCGGCCGGGGTGTTGGCGGTGAGGTCGGCC 3669 30 100.0 35 .............................. CCCTGACCGGGCGGCACGACCTCGGGAACGCGAGA 3734 30 100.0 37 .............................. GCGGGCGGGACACGCCTGTACGGGGGGTGGCGGCGCA 3801 30 100.0 37 .............................. GCCGTCTTGTAGGGGCTGACCAGGGACGATGCCTCCG 3868 30 100.0 36 .............................. GTGGTCGCCCAGGGCCTGGGGAAGGTCACGGCTCAG 3934 30 100.0 36 .............................. TCCAGCCCCCAGGGCAGTTGGGTCGAGTTGTCGGCT 4000 30 86.7 0 ..T...................A.G...G. | T [4016] ========== ====== ====== ====== ============================== ====================================== ================== 9 30 98.5 37 GTCCTCATCACCCCTGTGAGGGGTACCAAC # Left flank : CCGAGGGCGGCGGCAAGTCGGCGAGCGGTTTCCAGCCGTGTGTCCTGCCGGGCGCCCTGTTCCAGCTTGGAGATCAGGGAGAAGGAGAGACCGGTGGCACCGGCGAGTTCCCGTTGGGTGAGACCCGCGCGCTTCCGCGCTTCGCGAAGACGGTCTCCGAAGGTTTGATCAACCATGGCTTCCACGACTCCCGTTCCATCGGGCAAGAGGTCGCTCCCCGGACGGTATGCCCGATTGTCGGGGAGAACCAACGACCGGACATCGAATGGGCGAAAATGGGGTGCTCATCCCATCGAACACCTCGTCTCTTGCCTTGGTACCCCTGTGCCGGGAGAGAGGCGGGTGAGGCTGAAGGGCTTCGGGCGGAGGGTGGTCGGCGTAGTGTGGGAGCCCCGGATTTCAGCGACTCTCCGGGGTTTCGTGCACTACCGGAGGTCTGCTGAAAAATCGGCTGCCGAGACGGCGACTCGACTGCGCCTGACCTGGACCTTCACAATGGG # Right flank : CCACGCTGGTACCGAGTGCTCGTGGCGCGTTGTGGCCATGCCTTCCTCACCCGGGAGAAGAAAACCTTCTTCCCCCCTCATGGACCCGGGTCATCCGTTAGGGTCCTCATCACTCCTGCGAGAGACAACGGCTCGGTGGGATGCGTCCTGCTTGTCGGCAGAGCCGGGACGCTTGTCGAGGCGTGGGCGAGGAGCGATTCGAAAGGAACCCTCGAACCAGACCTTCGAGGCTCGAAGGGGAACGTCGGCAAGGGGACGGGGAGGGAACTTGTCGTAGCACGTGGCGATGCCGTGCCGCCCTTTCGGCTTGTTGATCATTTCCTGATGGTGTTCCGCTCCTTGTGGAGGCCGACCGTCGTGGCCGGCGGGCCGACCGCTTCGACTCCCCTCCCTGCGGGGCGCGGTCCGATCCGTTCGGAGCAAGGCCCGGTCGAGCGGTCGAGCGGGAAACCCGGCTGAGACGTGATGACCCGAGGAGTGCAAGGCATGACAGCGGATGC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCACCCCTGTGAGGGGTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 1637-2130 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKHT01000051.1 Streptomyces alkaliphilus strain DSM 42118 NODE_51, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1637 30 100.0 34 .............................. CCCTGGCGCTGGCCGGCTACAACGCCGGCTGGGG 1701 30 100.0 34 .............................. CCCTGGCGCTGGCCGGCTACAACGCCGGCTGGGG 1765 30 100.0 38 .............................. CTGAAAATCACCGTCCGGGCCGACGGTCGGGCCCTCGT 1833 30 100.0 39 .............................. TTCGCGCCGATCTCCGCCACCTTCAGGCGGGCCCGGCCC 1902 30 96.7 35 ..........C................... GGGGTGACGGGGCGCTGAAGATACGCCGCCAATTC 1967 30 96.7 37 ..........C................... GACGTGGCGATCCACCTGCGGTAGGCGGTGTGCGGGG 2034 30 93.3 37 ..........C.....A............. TCCAGGATCTCCGGCAGATCCCGCATCTGTCCGGAGG 2101 30 80.0 0 ..........CT.............TGGC. | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 95.8 36 GTCCTCATCATCCCTGTGAGGGGTACCAAC # Left flank : CAACGAGAAGGACACCCCGCTGAGAGCGGCCAACTCGCGTTGGGTCAGGCCCGCCAACTTCCGGGCTCGTTGGATGCGTTCCCCAAGATTCGTACCGGCCATGGTGGAATGGCTCCCGTTCTACCGGCTTGCAGGTCGCACACATGACGGTACTCCCGGTTATCGGGCGAGCCAACGGCTGTTGCTCCGTCCTCGGGGAAGTGAGGGTCGCGGGCCCGGTCGTCTTCTCCAGGCGCGGCAAGGCGCTTGGCTTCGGAGGTCTCCGTGGGAGGGCCCCGGAGAGCGGAAGTGTCGATCTTCTGTGCGGAGACGGGTGCGCAGCCGTATCGCCAGCCGTGCTCCTCCTTGAGGAGCGCCGGGAGAACGGTGCTCCTCGGAGTACGCTGAGAGCGCTGGATTTCAGCGACTCTCCGGGGTTTCGTGCACTACCGGAGGTCTGCTGAAAAATCGGTCGCCGGGACCGCGACTCGACTGTGCCTGACCTGGACCTTCACAATGGG # Right flank : CTATCCACCGGGTGGTGCGTCGGGTGGTTGGGAGCGAACCGTTCGTTGCCGGTGGCGTTGTTCAGGGGAACGTGCGCCGCGTTGGTGGCCATGGCGGGACGCAGGGGAGTGGGATGCGGGCGGATGTGCGGCAGGTCGCGGAGGGCACCTATCTGGTGCACGGCAGCAACACCAACTGGGTCATCCTCACCGAGGGCGGGGAGATGACCCTGATCGACACCGGTTATCCCGGTGACCGGCAACGGCTGCTGGGTTCGCTCGCCGAGGTGGGCGGCTCACCGGAGCGGGTGACGGCGGTGCTGATCACCCATGCCCACAGCGACCACCTCGGATCGGCCGAGTACCTGAGGGCCCGGTACGGCACGCCCGTCCTGATGCACGAGGCCGAGGTGCCGCACGCCCGCCGGGACTTCCTGCACCAGGTGTCGATCGGCACGGTCCTGCGCAACGCGTGGCGGCCGGGCGTGCTGCCGTGGGCCGTGCACGCGCTCCGTTCCGGC # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCATCCCTGTGAGGGGTACCAAC # Alternate repeat : GTCCTCATCACCCCTGTGAGGGGTACCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 8571-7497 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKHT01000075.1 Streptomyces alkaliphilus strain DSM 42118 NODE_75, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================== ================== 8570 28 100.0 33 ............................ TCGAGTATCAGCGGAGTGTTGGCCGGCCACCAC 8509 28 100.0 33 ............................ CGTTGCCACAGCTGCTCCCACAGGGAATCTCGG 8448 28 100.0 33 ............................ GATGTTCGAGCACTACGATTTCCGCGCCCCGAT 8387 28 100.0 33 ............................ TCCGGCGGGCGGTACGTTGAGAACCGGGAGATC 8326 28 100.0 33 ............................ CCGGTATCGAACTGCGCGTTGGTGATCGGCGAC 8265 28 100.0 33 ............................ GGCGTCTCCGGGGCGCCAGGGGATCACCCCGTC 8204 28 100.0 33 ............................ CTGCTGGCCGACCTGGAGAAACTGGCGGCCCTC 8143 28 100.0 33 ............................ CCGTCTCCGGGCCCCGTGCGCTGCCCGAGGAGG 8082 28 100.0 33 ............................ GCCCCGGCCACTCGCCCCCGTGTCGGTCGCCGA 8021 28 100.0 33 ............................ CACGAAAACGCCGTTGTCCATCCCGCCCGGCGT 7960 28 100.0 33 ............................ CTGACGGCAGTTTCGTCTAGGTTCCCGTCATGC 7899 28 100.0 33 ............................ TCCGGGAGTACCCGCCACCGGTGGTGTCCACCG 7838 28 96.4 33 ..............T............. GAGGTGTCCGAGTTCCTCGGGGTCCGAGACGCG 7777 28 96.4 33 ..............T............. CCACGGCGTGCGCCTGCCTGGGGCCCCCGTGGA 7716 28 100.0 33 ............................ CTAGAGGTCCACGCTGCCGTCAGGGACGCGATC 7655 28 100.0 33 ............................ TGTGCAGTGGCACCAGGCGGAGTACCACGCGGT 7594 28 100.0 42 ............................ CCTGAACTGCCGGGTCACCATGCCGTCCCCCTGGTGAGGGAA 7524 28 85.7 0 .....................GC.CC.. | ========== ====== ====== ====== ============================ ========================================== ================== 18 28 98.8 34 GTCGGCCCCGCACCCGCGGGGATGTTCC # Left flank : GCGGAAAGGCCGGAAGGGGCAGTGGGGGCCATCCCCTCTCCGAGTGGTGAAGGGTCTCCACCCCCGACCCCTCCCCGGCCGGCCGACATGGGAGAGGAACACATCGCCATCATCGGCCCCGAGTTCGACACACCTTCCGAAACTCCGGAGCCGTTTCTATGACCGTCATCGTGCTGATCGCGGCCCCGGAAGGGCTGCGGGGCCACCTCACGCGTTGGATGGTCGAGGTCAACGCGGGCGTCTTCGTCGGGAACCCCAGCCGTCGCGTACGCGACCGGCTGTGGGAACTCCTCGCCACCCGCATCGGCGAGGGCCAGGCCGTTCTCGTGGAGCCCGCCGCCAACGAGCAGGGATGGGCCGTCCGCACCGCCGGCCGGGACCGGTGGCGCCCGGTGGACTACGACGGCCTCATTCTTTCCGCCCGGAACCGGAGGTGACCCATGCGATTCCAACTGAATGAAAACGGCGCCTTGCCACGATAAAGCCCCAGGTCAAGAAGT # Right flank : TCCCGGCCACGGCCGTCCCGACCGAACGCGCCTACCCGACGCGCGCCGCCGGTGTGCTGCGCAGCGCGGTCGCGCGGTGGGCCCGGCGCATCATCGCGCGGACCACGAACGGATGGAAACGCCGTACGACGGCGAAATACAGCCGTCCCCGGCGGTTGTGCAGCTCGGTGACCGTGGTCAGCGTCATCCCACCCTCGGCGACCAGCAACGAGATCCGGAAGTTCAGGTGCTCGGCGTCGGTGCCGGCCAGGAGTTCGTGCTCATCGCGTGCGAGGACCGGGAAACCGTCCCGCGAGCCGTCGCGATCGATGCCGAGCAGGCCGACGAACCCCTGGCGCAGCACCATCAACGCGCGCACCATGGGCGGCGGGCGCAGGAACTCCCGGCGCCAGTACTCCGGGTCACGCGGCATGAACGGGTGCAGCTCGACCCGCCAGGCGTCGATGAAATCCACGCGGCCCGGGGCGCCCCGGAGCAGTTCGGCCGCTGCGGGCGGGTCG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 226-1324 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKHT01000052.1 Streptomyces alkaliphilus strain DSM 42118 NODE_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 226 30 100.0 38 .............................. GGGAGCCCGAGCGGGGGTAGCGCCCCGGAACGCAAAGA 294 30 100.0 37 .............................. CCGTAGTACAGGGCCACGTGGTAGATGTAGCCGCCGC 361 30 100.0 36 .............................. GCTCACTCCCCGCCCACGCGCAGGGCCACGGCCCGG 427 30 100.0 37 .............................. CGGAGCTGGAGCGACTGGAAGCCGAGTGGGGCGGCCT 494 30 100.0 37 .............................. AGGGGACGGACCCAGCGTTCGGCGGTGCGTCCCAGGC 561 30 100.0 37 .............................. GCAGGCAGGGTGCGGGCATGGGCCCGGCCCGTCACGG 628 30 96.7 38 ..............G............... GTTGGCACGACACCCTCGATCAGGCCCTGGCGGAACAG 696 30 100.0 36 .............................. ACGACGGCGGCCGCCGTGGTCTGGTCGGCCAGGGTG 762 30 100.0 36 .............................. GAGGAATTTCCCTCCGCTTGCTTGGACCTTCTTGCC 828 30 100.0 38 .............................. ACGGTGTTCACCGGTCACCTCGCTGCCCGGTCTCGCGG 896 30 100.0 36 .............................. GGGAGCCCCAGACCCGGGGCGGTGTGCTGCGCGGCG 962 30 100.0 37 .............................. GCCGCAATGTGCTGCGGGGTGAGGGTCTGCCGCTGGA 1029 30 100.0 37 .............................. GCCGCAATGTGCTGCGGGGTGAGGGTCTGCCGCTGGA 1096 30 100.0 37 .............................. ATGCGCGCTTCCATGTGGCTTCTCCTCTTGGGTTCGG 1163 30 100.0 34 .............................. CACTCGTGGCGGCGGCGGAAGAGTCCCATCACGC 1227 30 96.7 36 .........................T.... ACGGTGTTGAGGCCGTTGTACTCACTGATGCCCGTC 1293 30 90.0 0 .........A...............G..T. | TA [1317] ========== ====== ====== ====== ============================== ====================================== ================== 17 30 99.0 37 GTCCTCATCGCCCCTGTGAGGGGTACCAAC # Left flank : AAGAGACAGACACCCCGGTGCCCGCCACCTCCCCCACAGGTGGCGGGCACCGCCGTGCGTGGGGGGCTCGTCGGCTTCCGGCGGCGAACTCCTTGCCGCCCGACGTACGATGGCCGCCCGGATTTCAGCAACACTCCGGGGTTTCGTGCACAACCGGAGGTCCGCTGAAAAACCGCCGCTTGTTTGGGCGTCTCGACGCTGCCCGACCTGGACCTTCACAATGGGG # Right flank : CCGGCGGACCCCTCGGGCTGGCTTCGGTGGTTCTTGCGGGCCCACCGCAGGGGGAGAGCCCGCTACCGGGCCGTCCTTGTTGGTCTGTTCTCGCTCTGGAGCACGTCGCGAAACCCTCACACCGGGCGCCGAGGTACTTCCCAGCACGATGTCGGGCCGCGATGCCCTGGGCTGATGTGCCGAGTTCGGGCGCTGAGCGGCGGTACGTCCGGGAAGTTCTCCCATGCCTTTCTGACCGAGGGCCACCTTCCGTGCGCGCATTGTCAGACCCTCCTGGCAGTCTTCGGCATGCGTGGGTTCCGGGGGAGAAGCGGAGCCCGTCTGGAGGGAGGTGCGCGGTGGTCGGACGATCATCGGTGCATGGGGCAGGGAACCGATTTCCCAACTTCCGCCCACATCACATGACATCAGATGCTTTGATGTGCGGGCCGCGAGGGTGCCGAGTCCGGGCCCTCACATCTTTGGGGGGTGATCTGCGGTGCGATTGACGCTGTCCGTGA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTGTGAGGGGTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 10083-11377 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKHT01000052.1 Streptomyces alkaliphilus strain DSM 42118 NODE_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 10083 30 100.0 37 .............................. CGCTTCGCGGCTGCGTAGTGGGCCCGGTTTACCGGCG 10150 30 100.0 36 .............................. GGCCGCCGAGCGCGCCGAGGAAGCCCGGGTGCGCGG 10216 30 100.0 38 .............................. CCGACCTCCGCCGTCCAGCACTCCCAGATGATGGAGAG 10284 30 100.0 36 .............................. GGTGCCGGTCCGCTCTCCGGCTGGAGGTCGGCACCG 10350 30 100.0 35 .............................. CCCAGGCGGCGGGCGACCATCGCGAGCAGCCGCGT 10415 30 100.0 36 .............................. AGCCCGGGCATCGCGGCGCGGGCGGCCCGCACCTGA 10481 30 100.0 37 .............................. CGGCCTTGTCGACCGGGGGCGGGAGGATGACACGCAC 10548 30 100.0 36 .............................. GCTGCTGCGGCGAGCTGGGTGGGGGTGTAGCTCACG 10614 30 100.0 37 .............................. CGCTCCGCTGCGCGCTCATCGTCCACAAGGCCGATGA 10681 30 100.0 37 .............................. GTGGTGGCCGGCACGTCGGCGAGAAGGGCGTGCCAGC 10748 30 100.0 37 .............................. AAGTGGGTCATCGCCAGGTCCAGACTGAGCAGGCGGG 10815 30 100.0 35 .............................. AAGGTGATCTCGACGGGCGTCAGGGAGGATCCCAT 10880 30 100.0 38 .............................. GGTGGGCGTGGCAGGTGCGGCAGCGGAGGATCGCGACG 10948 30 100.0 36 .............................. ATGAGATCCTCGTCGAGTTGCGGCGGGGATGTTGAT 11014 30 100.0 37 .............................. CGTTCGAATCGCGCTACCGATCCTCCGCGCGCCACCG 11081 30 100.0 35 .............................. ATGTGCGCCTGGACCATCTCCAGGTAGTCCCCGGT 11146 30 96.7 35 .........G.................... ACGTCCTCCCTCCGGCCGGAGTGGACGAGCAAGGT 11211 30 96.7 37 .........G.................... CGAATTCGCTCATGGGCATGTCCCGGATCTATTCCGG 11278 30 93.3 40 .........G..................G. AGGTGGCAGACGACGAGTAACCCACCGCACCGCAAAGGGG 11348 30 93.3 0 .........G.................G.. | ========== ====== ====== ====== ============================== ======================================== ================== 20 30 99.0 37 GTCCTCATCACCCCTACGAGGGGTAACAAC # Left flank : CACCGCACGCTCAACCGGCCGGTCGCCTACGACGAACTGCTCTACCTCGACGCCCTCTCCCTCTCCCGGCACTGCCTGGAGGGCACCCCGTACAAGCCGTTCCGGATCTGGTGGTGAGCACCGATGCACGTGGTCGTCGTCTACGACACCGACGCCAAACGCAACGCCCGCATCCTCCGCACCTGCCGCAAATACCTGCACCACGTGCAGCGCAGCGTCTTCGAGGGACAACTCAGCGACGCTCAACTCCGTCGCTTCCGCGCCGAGGTCGAATCGGTCCTGGACCTCTCGTACGACAACGTCCTCGTCTACACCTTCCCGCCGGGAACCACCCCGGTGCGGATGGAGTGGGGAGCGGTCCAGGCGATGCCGACGGACGTACTCTGAGAGCCCGGATTTCAGCGACTCTCCGGGGTTTCGTGCACTACCGGAGGTTCGCTGAAAAACCGCCTCCGATCCCGACGCCTGGACCGCGCCTGACCTGGACCTTCACAATGGGG # Right flank : CCACCCCCTGCCCTGCGGGCTGGGGGTGGTCAGGCGACAGTGGCCGCGAGGAACGCACGCAGCCTCGCGTTGGAGGGCTCGGAGTCCCGTGCGCCGATGCGCGCGGTCCAGGATCGGCAGCGCACCTCGCACCACGCGGACAGTGCCTCCGCCGTGGCGGTTCGCCAGGCCGGGACGGTGCGGGCCCACCGCACGGCGGTCGCCGCGTCGTGGCCCTCTTCCATCAACCGAATTCCGGTGTCGGCAATATCGAGCCACGCCGGCCCTCTCGCGGCGGCAGCCCAGTCCACCAACCACACCCGGCGACCAGCACTGTCCACAAGTGCGTTGTGCCGGTGAACGTCCCCGTGCACCAGCCACCCGCCCCGCAGCGGCACCAGTTTCTTCCGCGAGCCCCAGCGTTCCCACCGCTGCGCGTAGCAGGGCAGGGCCCCGGCGGGGATGCGGCACCGGCCGATCGTCAGCGCGTCCGCCATCAGGGGCAGATCCGGTGACCCCGG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCACCCCTACGAGGGGTAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 619-1257 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKHT01000203.1 Streptomyces alkaliphilus strain DSM 42118 NODE_203, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 619 29 100.0 32 ............................. GGCACCCACAACCCCCTGTGGGACCTCGCCCG 680 29 100.0 32 ............................. TGGTGGCGGTGATGGCGCAAGGCGACGCGGTG 741 29 100.0 32 ............................. TGACCACCCGCACCACACCGGAGGATCCCGCC 802 29 100.0 32 ............................. GCCACGCCGGTCGTGGCGTTGCCGGTGACGTT 863 29 100.0 32 ............................. GGCGTCGGACGCCCCCGGCACGGCGGGACGGG 924 29 100.0 32 ............................. CTTTTCACGCTCATGGTCATGGGGCAATACAA 985 29 100.0 32 ............................. TTCGCGGCGGCCCGCTCCCGGGTCTTCCCCGT 1046 29 100.0 32 ............................. GCGCGCCCGTTGCGGCCGATGGCCCGGCCCTC 1107 29 96.6 32 ........................A.... TTCGCGACGGTGCGGGCCTGGTCCGGCCACAC 1168 29 96.6 32 ........................A.... GACCCCCGTCACGGGCGCGGTCTCTGCGGGCC 1229 29 93.1 0 ..........................TT. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 98.8 32 GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Left flank : GCGGCCCGCACCCCGCGATCCACATACTCCGCCGGACCGGCCGCGGTGGCGATGAGATAGAGCACCCGGGTCATGACCGCAGTCCACAACGCCCCACCAGAGCGGTCAAGCCCGCACCCGGCGAAGAGGCCAGTTCCATGAGTTCGCCGACCAGTTGGGTCACCACCGGCCGGCGCACCCCCGACAACGCGCCCGTCGAACCCGTGGCGCCGCCCTCGACGAGCGCCACACGGTCCGAACAGAGCTCCATCTTCGAGAGCCACGAGTGCCCCTGGCGCCCCATCACCCGAGCGTCTGGAGATCCACCGGGAAGCCCCACATCCCGAACACCCCGCACCAGGGCTGGAGCAAAGCGGTTCAACGGCGGTGCGTCGGAAACCGGTAGAGTCGAAGAACCCACTCCACCTTCAGACAAAACAACAGGATCGCACCTTATGTCGGAATCTCTGCTAGTGAGTAAAAACAGGCTCCTCGCGGGATAAAGGTGCTGGTCGGCTCCT # Right flank : CGGATAAGCATGCGACATCGTCGCTCGCTCCGTGCGTATGCGCCGGGCGCGGAGCCGGGGATGAGGGGCGTGCCCCATCCGTGCCCTTCGGAGCGGACAACACCGGTCAACAGCGGTGTTCACGGACCCGCCGGGACGGGTGGCGATGGAGGCGTTTCCGCAGATCAGAGCGGCTTTCTACGCCGAAGCGTCGGTGCTTCCCAAGCTCAGAGCGCGAGTTCGATTCTCGTCGCCCGCTCCACTGCAAAGCCTCGGGTCAGGGACCTAATCCCGACCCGGGGCTTCGTTGTGTCCGAGCCTGCCAGGACTTTCGCGGCAGAATCGTCTGGCAGCACTCTTCGTCCTCGGCGAACGACAGCCGTGCAGGAGCAAGGGCCCGCGGGCAAGGAGCCTGCGCGTCCAGTAGAAGCAGGTTGCCCGTCGGCAGATGGTCGTCACCGGACATGTGGCCGCCGCCGGCGCCGGGGATCCATCAGAAGTAGAGAATTTGCTGCACTTCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Alternate repeat : GTGCTCCCCGCGCCTGCGGGGGTGATCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2507-4854 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKHT01000192.1 Streptomyces alkaliphilus strain DSM 42118 NODE_192, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2507 29 100.0 32 ............................. GAAGTGCTCTACGTGGTCGGGGTAGTACAGAT 2568 29 100.0 32 ............................. TTCCGGCCATCGTGCGTCCATGTGTGAGCAGT 2629 29 100.0 32 ............................. CCAGGCGGTCAGGGCCGGGCCCGGACAGGCGG 2690 29 100.0 32 ............................. CTCAAGGAGCCCCACCCGCTGTGGGCCGACCC 2751 29 100.0 32 ............................. CCCACCCGCGAACGGTGATGAGCTGCTCACCC 2812 29 100.0 32 ............................. TAGCCACAGCAGCTTCGCCCCGATCGGCAGCC 2873 29 100.0 32 ............................. GCCGCAGACGATCCCGGCCTCGGTCAGCTCCG 2934 29 100.0 32 ............................. CCCAACTCCTGCCGGAGTGCTGCCAGCACGTC 2995 29 100.0 32 ............................. CCCGGCCGCGTCCGCGAGTGCGGCCGTGCTGA 3056 29 100.0 32 ............................. GGCGGCAGCCTCCGTTTCGGCCGTGCGGCGCT 3117 29 100.0 32 ............................. TTCGCGGCGGCCCGCTCCCGGGTCTTCCCCGT 3178 29 100.0 32 ............................. AAGTGGAACGAAAAGAGCGCCATCGGACACGG 3239 29 100.0 32 ............................. GGCGTATATCACCGTCGCAAAAGACATGAGTG 3300 29 100.0 32 ............................. AGGTCGAGGATCACGCGGCCTCCTCGTAGTCG 3361 29 100.0 32 ............................. CGAGGGCCGCTACCCGCAGCAGGTGCTCCCCC 3422 29 100.0 32 ............................. GCCCGCACGATCTGCCGCAGGCGCCCCGTCTC 3483 29 100.0 32 ............................. TACCGGCGGACGGGGGAGCTGTATCCGGGCCG 3544 29 100.0 32 ............................. TCAACGCCATGCACGCCGAACTCGGCATCGGG 3605 29 100.0 32 ............................. CGCGATCAGTACGCGGTCGTGATCCTGTCCGG 3666 29 100.0 32 ............................. TACTGCGAGTCGGCGCGCGAGGCCCTGATGCG 3727 29 100.0 32 ............................. GCGGGCCGGGAGTGGCGCGCGGCGAAGCGAGA 3788 29 100.0 32 ............................. AACTGACGGGGGGATGAGCGATGACGGACGAG 3849 29 100.0 32 ............................. TCCAGATCCCACGTGTGCGAGGAGAACTTCCC 3910 29 100.0 32 ............................. GCGGTCACCCCAGATCTGAGACGTGATCAGCT 3971 29 100.0 32 ............................. CGGCTGTCGGCGCATTCGGCGCGGCGGCGCCG 4032 29 100.0 32 ............................. CGGGCGCTCACCGCGACGCCGGAGCTGGAGCT C [4041] 4094 29 100.0 32 ............................. GCCTCCCGCGCCGTCCCGCCCCCGCTGCGGCG 4155 29 100.0 32 ............................. GATCTCCACCCCGAACATCCCCTTCCTCGCGG 4216 29 100.0 32 ............................. GGTGCCGCCGGATGCGATGAACTCCTGGAAGT 4277 29 100.0 32 ............................. GGCGACCCGCCGCCGCCCGGTTGGAACCCCGC 4338 29 100.0 32 ............................. GGCCGCGCCGCCTGCCACCTCCAATGGGGCCC 4399 29 100.0 32 ............................. AAGCTCAACGTCTCCGACCGCGCCGAGCGCAT 4460 29 100.0 32 ............................. GCCGCCCCGGTTGACATGGTGGTGACCGGCAA 4521 29 100.0 32 ............................. GGGCGCCAGGGCCCCGCTCCAGGGGCGCTCCA 4582 29 100.0 32 ............................. AAACGATCGTTTGTTGACGGTTGGGCGGGACC 4643 29 100.0 32 ............................. CGGTCGTGGCTGTTGTTCGGGGTCTCGTAGCT 4704 29 96.6 32 .........................A... CGATGATCGCGGACCAGTGGGTGGTCAGCACG 4765 29 100.0 32 ............................. GGTGGTCATGACCAGTACCGGGGGCCGTCGTC 4826 29 93.1 0 ..........................TT. | ========== ====== ====== ====== ============================= ================================ ================== 39 29 99.7 32 GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Left flank : CCACGGTGAGGAACCCATCTGGTGACCGTCATCATCCTCGCCAACTGCCCCAGCGGCCTGCGCGGGTTCCTCACCCGTTGGCTGCTGGAGATCTCCCCCGGAGTCTTCCTGGGCGCCCCCTCGGCCCGCGTACGGGACATCCTGTGGGCCGAGGTCCGCCAGTACTCGGGAAAGGGACGAGCCCTGCTCGCCTACCAGACCAACAACGAACAGGGCTTCACCTTCGAGAGCCACGACCACGCCTGGCACCCCATCGACCACGAGGGTCTGACCTTGATCCACCGCCCGAGTGCCGGACGGCCCACCGGGGAGACACGGGCCCCGAACCCCCCGCGCCAGGGCTGGAGCAAAGCGGCCAAACGACGGCGCTTCGGGAACCGGTAGGGTCGGGAAACCGGCTCAACCTTTCGAGCGAAAGACCAGGATTGCACCTTATGTCGGAATCTCTGCTAGTGAGTAAAAACAGGCTCCCGGCGGGATAAAGACGCAGGTCGGCTCCT # Right flank : CGGATAGGCATGCGACATCGTCGCTCGCTCCGTGTGCCTGCGCCGGGCGCGGGGCCGATGAGTGACGGGCGTGCCCCATCCGTGCCCTTCGGAGCGGATAACACCGGTCAACAGCGGTGTTCACGGACCCGCTGGGACGGGTGGCGAGGAAGGCGTTTCCGCAGATCAGGGCGGCTTTCCGCGTGGAAGCGTCGGTGATTCCCAAGCTCAGAGCGCGAGTTCGATTCTCGTCGCCCGCTCCACGACGAACCCCCAGGTCACAGACCTGGGGGTTCGTCGTGGAGCGGTCTGTGGGATTCAGGCCGCGTGAGGGGTGAAGGTGACGCGGGAGTCGTCCGCGGTGAGGGCCACGTTCAGCGAGCCGTCCAGAGCCTTGGCCAGACGACGCAGCAGCGGAAGCGTCGGTACGGTGTCGCCTCCCTCGATGCGGGAGATCTGGGGCTGGGTCATCGCCGCACGCTCGGCCAGCTCGGTCTGGGACAGGCCGAGTTCGACACGCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //