Array 1 262051-263665 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTNX01000002.1 Escherichia coli strain MOD1-EC6241 MOD1-EC6241_2_length_383916_cov_81.9771, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 262051 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 262112 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 262173 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 262234 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 262295 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 262356 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 262417 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 262478 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 262539 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 262600 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 262661 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 262722 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 262783 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 262844 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 262905 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 262966 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 263027 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 263088 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 263149 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 263210 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 263271 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 263332 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 263393 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 263454 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 263515 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 263576 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 263637 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 279167-279867 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTNX01000002.1 Escherichia coli strain MOD1-EC6241 MOD1-EC6241_2_length_383916_cov_81.9771, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 279167 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 279228 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 279289 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 279350 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 279411 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 279472 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 279533 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 279594 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 279656 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 279717 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 279778 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 279839 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //