Array 1 486837-488511 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPMD01000003.1 Salmonella enterica subsp. enterica serovar Hadar strain CFSAN059886 CFSAN059886_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 486837 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 486898 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 486959 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 487020 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 487081 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 487142 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 487203 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 487264 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 487325 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 487386 29 100.0 32 ............................. AATGGGATGTTCTCGATAATGGCGACGACGAA 487447 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 487508 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 487569 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 487630 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 487691 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 487752 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 487813 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 487874 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 487935 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 487996 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 488057 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 488118 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 488179 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 488240 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 488301 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 488362 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 488423 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 488484 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 505193-506932 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPMD01000003.1 Salmonella enterica subsp. enterica serovar Hadar strain CFSAN059886 CFSAN059886_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 505193 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 505254 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 505315 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 505376 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 505437 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 505498 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 505559 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 505620 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 505681 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 505742 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 505803 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 505864 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 505925 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 505986 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 506047 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 506108 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 506169 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 506230 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 506292 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 506354 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 506415 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 506476 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 506537 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 506598 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 506659 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 506720 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 506781 29 96.6 32 ............T................ AAGCCATTGACGCAACGGAAAACGCCAATGCT 506842 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 506903 29 100.0 0 ............................. | A [506930] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //