Array 1 235-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYYP01000015.1 Campylobacter sp. US12a NODE_15_length_16210_cov_19.058824, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 234 36 97.2 30 T................................... ACATTTACACAACAAAATATAGGCATGCCT 168 36 100.0 30 .................................... TATTCTACCATTAGCATTAGAACTTTTTAA 102 36 100.0 30 .................................... GCAGGTATTTACTGGCTTATTTTGAGATAA 36 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 99.3 30 GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Left flank : ACATAAAACCAGGTAGACATATCAAAATAGCCAAGGCTAATGAAAAATTCATCATCGCCTTACCAGGTTTTCCTTACTCGGCTATGGTAATGTTTAATCTTTACGCAAGAGAGATTTTAAACTCTTGGTTACTTCAACCTAAAGACTATATTTGCAAGGCCTTTTTACAAGGAAGTTACAAGAAAAAAACACCTTATTTGGAATTTGTCGCTTGTAATGTGGAATTTAAAAATGGACGCATTTTAGCCAATCTTGAAGGTAAGAAAGAAGGCTCTAGTGCGATTATAAACAATCTTAACAATAAAGCTGCCCTTATGGTGGTACCAAAAGAATGTGAAATTTTAGAAAATGAAAGTTTAGTGGATATTATCTTTATGCCTTAAAATTATTTAAATAATTTTATTTCGATTTTAATCAACCCTAAATTTCAATAAGTTTCAAATTTACAACCTCCTTTTAGTGAAGTAATTAGCCCTAGCAGAGTTTCAATCCACTAGGGT # Right flank : T # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: R [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 12569-12868 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYYP01000014.1 Campylobacter sp. US12a NODE_14_length_17983_cov_11.768625, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 12569 36 100.0 30 .................................... GAGCTTTTCAGTTTATATTTTGGCTGAAAA 12635 36 100.0 30 .................................... TACACTACTTCCTGCTTCAGTAATTTGCTG 12701 36 100.0 30 .................................... TGCCTGTTAATTTTCCACATAGACATATTT 12767 36 100.0 30 .................................... ATAGATTCTTGGAGTGATAGTTCTCGGATA 12833 36 83.3 0 ...........T..........T..A.AT......T | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 96.7 30 ATTTTACCATACAAACAATTAACAAGAGACTAAAAC # Left flank : GTGAGATCTGATTTATTTATAGATAAAAAAAATAAATTCCATGCAGTGCCTATTTATAAAGCAGATTTTTCTACAAAAAAACTTCCAAATAAAACCCCTGCAACTACATCAAATGGAGAAACCAAAGAAGGCATTGAAATGAATGAAAATTATAACTTTTGCATGTCATTGTATAAAAATACTCCAATTAGCGTAAAAATAAAGGGCATGAAAGAGCCTATCATTTGTTATTATCATGGTTTTAATACTTCAGGAAGTAAAATAACTTATAAAAAACACGACAACAATTATCACAACCTTAGTGAAGATGAAATGGTTGTTTTTAGAAAAAATGATAAAGAATCTATAGTGGTAGGAAAAATACTTGAAATTAAAAAATACAGTATAAGTCCTTCAGGTGAATTAAGCTTAATTGAAAACGAAGAGCGTAAATGGTTTTAGATATTTTTGCTCAAAAAATAAGAAAAAACATTGATAAAATAGGCTTTTTAGATAAGTCT # Right flank : TATATTCTATATTTTTTTAGTAATCAATAATTATATTATATAAATATTTTATATAAATATGATTTATATATAAACATATTTATAAATATTCGATATTATATTATTAATATAATATAATTATAATCTTACATTAACCAAAATGAAGTATAATATATAAAAATATATGGAGTGTTAGAATGAAAAAAAAGTATTTTTTAATTGGCAATATGGAACATATTCAAGTAATTGATTCTATCCAAGTGATTGCAAAGGGAGTCAAATGGGATAGATTTATTTCTTCTTGTGTTTTTAATGCATTAAAACACATAATTAATTCAAAGCATGATTTGTGCTTTCCCCAAGATAAAGAAAAAGCTTTATTTTATATTAAAGCTATTATTAAAGAAAGCAAAAATATATCAAAATCCCCAAATTTTTATAATAGCGAAGAAACCAAAAAGATAAATTTTCTTTTAACAAATATAGCTGAAAAAGACAAAAAATTATTTTACATAGTTAGA # Questionable array : NO Score: 2.90 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCATACAAACAATTAACAAGAGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [78.3-93.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 137-371 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYYP01000018.1 Campylobacter sp. US12a NODE_18_length_8175_cov_13.810324, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 137 36 100.0 30 .................................... AGCGAAAGAGCTAAAATAGAAAAAGAGCAA 203 36 100.0 30 .................................... AGAGGAACGCACTAAATTCAAAAAGCATGT 269 36 100.0 31 .................................... GGAAACAGGCGAAGTTATTGAACTTGAATAT 336 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 4 36 100.0 31 GTTTTAGTCTCTTGTTAATTGTTTATATGATAAAAT # Left flank : AATAATATAATGTAGAATATTTATAAATATGTTTATATATAAATTATATTTATATAAAATATTTATATAATATAATTGTTGATTACTAAAAAAATTATGATAAAATTTTTTTAAAAGTTTTAAAATCAAAGGCATAG # Right flank : TAGACTTATCTAAAAAGCCTATTTTATCAATGTTTTTTCTTATTTTTTGAGCAAAAATATCTAAATTATATCTGTTGTTTATATATTGTATTTACATCAATATCTTTTTTATTAATTATTAAATTGAATATTTCTTCAAGAGATTTTGAAAAGTTGTTTTCATTATCAAACAAAATATCCATAGCTTTTTTTTCAGATACGCTTTGTCCTATGATTTCTTTTATAGCTTCTTGATTTTTATCAAAAAATTGATATGCATCAGAAGGATTAAAATTATTTTTTAGTGCAATTATTTGTTTTAGCAATTCATTATTTTTAATATTATTATTTTCATCATTTTCTTTCTCGTTTATTTCTTCTTGATGTTCTTCTTGAATTTGTTCTATTTTACCAATTTCTTTAGCATTCTGCAAAAAGCATTTAAAACTATTATTAATATTGCAATTTTCAAACATATCTTTTATATTTGCACTGTTATGTATCTTCCAAAGTTTTAAATC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCTCTTGTTAATTGTTTATATGATAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [85.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //