Array 1 889461-890748 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050854.1 Brenneria izadpanahii strain Iran 50 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 889461 28 100.0 32 ............................ TGAACCATCAAAATAAAATAAAGCCCCAATTA 889521 28 100.0 32 ............................ AGGTCGTCGGCGTACCGGCCGAGGATATGACA 889581 28 100.0 32 ............................ AGGAGATGAACTCCGGCGAAAGACCTTCTACT 889641 28 100.0 32 ............................ GCCATGTGGACCGCCGCGACCCCGTTATTCCG 889701 28 100.0 32 ............................ GTTGTTTATCAACCACCGCGTTTGCGCTCCGA 889761 28 100.0 32 ............................ ATCAAATTGCCGGGCAAATACGCGGAGACGTT 889821 28 100.0 32 ............................ TGGTGCGTTCGTTACGCCTCCGCCTGCAAGTG 889881 28 100.0 32 ............................ GTTAACGACGCGCTTCAAACCGACGGCGCCGC 889941 28 100.0 32 ............................ TAACGACGCTGTGGACGATTTACGTAAACGGA 890001 28 100.0 32 ............................ ACGGGGGATTTCAATAAAAATGATGTTGAGCA 890061 28 100.0 32 ............................ ATGCAGATCGTGTGGCTATAAACACTCAATTT 890121 28 100.0 32 ............................ ACGCAGAACCTGATGGCCACGATCAGCAGCGA 890181 28 100.0 32 ............................ CGGAACTGGACGCCACGCAGAACCTGATGGCC 890241 28 100.0 32 ............................ TTGAGCGTTCACAGAAAATTCTGGAATCTCGA 890301 28 100.0 32 ............................ TATCAAAATCGACCACAACGTGGGCGTTTCGT 890361 28 100.0 32 ............................ TAACAGCAATATCAACATAATCAGGTCGATTA 890421 28 100.0 32 ............................ CTGTGATTTAGCGATGTGAAACAGGTCTTGTT 890481 28 100.0 32 ............................ GTGCGGGCGGCCGTGCAGGGTCTTGAACTGGA 890541 28 100.0 32 ............................ AGGCAATAACGCCACCGCCCTCAATGAAGAAC 890601 28 100.0 32 ............................ GTTACCTGCAAAACACAATGCAAAAACCCGTA 890661 28 100.0 32 ............................ TGGTGGTTATACCGTGCCGCCGACAGCAGCAT 890721 28 85.7 0 ...........C.....T...GT..... | ========== ====== ====== ====== ============================ ================================ ================== 22 28 99.3 32 GTTCACTGCCGTACAGGCAGCTCAGAAA # Left flank : CGGCATTAACTGACTTACAGAATCATGCCTGGTTGAAAGGATTGCGGGACTATACGCAAGCCAGTGAGATTCTGCCGGTTCCTGCCGACGCTAAATTCCGCACGGTACAGCGGGTGCAGGTGAAAAGCAGCGCCTTGCGTTTGCGGCGTCGTTCGGTAGCCAAAGGGTGGCTGACGGAACAGCAGGCGGAGGAAAGGATTCCCCTTACCTGTGAAAAGCGCTCTACCTTGCCGTTTCTACAGTTAAAGAGTTTGTCATCCAGACAAATATTTAAACTGTTTATTGCGCAAGGGCCGATTCAGAGTATGCCGGTGATAGGAACGTTTAGCTCATTTGGGTTGAGCGCGACCGCAACTGTCCCCTGGTTTTGACCCTTTTTTTTCGGTCAATCTTAACCTATTGATTTTATATAAGGTTGACCGAAAACTTGGAAAAAGGGTTTTTGCGTTATAAATGTATTTTTTCTTTAACAATCAGGTAAACGCGGTTATTTTCTAACA # Right flank : AGGTTCAGGATTCGGCAGGCGGTGGGGCTTCGGCCCACCGCCGTGCCGGCACATTACCTGGTTCCTTTCTTTCGGACCGCGGTAAACCGCTTTAAATCTGCGCCAGTTTGACTTATCGCCCCAGTCGCTCGATTTTCATCGGCTCCTGGGGATCGGTTTTGTTGCCGTCTTTCTGTGTTGTGAAATCTATTGTGAGATAACAAAACTGCTAATAGTCATCATCGGTAGTTTTACTTTAAACATTTTGTCGTTGAACTTGTATCTCATCTCTTTTTCCGAATAGGTTTGGTTAGCCGAAACGACCACAATTTCGCCGTTGGGATTTTTAAAAGCGAGCGTACCTTCATCGTTGTGGATATCTAACACCTCTGCGCCTGGTTTTAATAATGCGCTGAAATGCTTCAGGACATAATATTCAAAGTTATATTTGACGGTGGTCTGCATTCTATCAATGGAGATCAGGGAGTTTTGTTTCCAGCCCCAGGTGCTATTACCGCTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGTACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //