Array 1 2638763-2637936 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033388.1 Akkermansia muciniphila strain CBA5201 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2638762 36 100.0 30 .................................... ATATCGGCGGCGTCATAGTTAAGTCCCTCG 2638696 36 100.0 30 .................................... CGATAGCCTTCATGCGGTCGTTGCATTTTG 2638630 36 100.0 30 .................................... AATGCGAGCGTCAGGCCATTAACTCGCCTG 2638564 36 100.0 30 .................................... AAAGCCGATTGCCCTTCCATATTAGGCCGT 2638498 36 100.0 30 .................................... AGTCATATATAGACTTAAGGTGCTTGGCGG 2638432 36 100.0 30 .................................... CTACCGTTCCAAAATGAGAGTAACCTGCAT 2638366 36 100.0 30 .................................... AATGCGAGCGTCAGGCCATTAACTCGCCTG 2638300 36 100.0 30 .................................... ATACTTTTGTAGAGTGGTGTAATTATTCAA 2638234 36 100.0 29 .................................... AAAACTATAGGTAAGGATCGCTTTTGGCT 2638169 36 100.0 30 .................................... TAGGGGCTGTAGCAGCGAGCAAAGCGCTGG 2638103 36 100.0 30 .................................... AAACGAACGCTACGGCGTTTGCCAATAACT 2638037 36 100.0 30 .................................... TGTTCCCCCGTCGCCCTGTTCGGAAAGAAC 2637971 36 94.4 0 .............................A.....T | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.6 30 ATTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC # Left flank : CTGTTATGCACCAGAACAAACAGATGCCGTTGAAAGCGGCGGTAGAGGCCGTTTGCCGCAGTTTCCGCAAAGCAGTTCTTGCCGGGCAATCCGGACCGTATGAACCATGGCATATGACAACTATAAAATGGGCTGGCTAGTTGTGTTCTTTGATCTTCCCACAACCACGCCGGAAGATAAAAAAAACTATCAGTATTTCCGTAAGGCTCTTTTAGAAGACGGCTATACGATGATTCAGTATAGCGTCTATGCCCGCGCGTGTGTTACTCAGGAAAGAATAGCTACCCACTCCCGCAGAATCCAGAAAATGATACCGCCTGATGGTTCTGTCCGCTGTCTTTTCGTTACGAATATCCAGTGGGATAAGATGTTCGTTTTTCATGGCAGGTCTTGTCCCCGACAGGAGGTTTCCCTTCCTCAGCAGATGCTCCTCTGGTAAAAATATCGGACGCCGTATTTTTTTATAAGTCGCTGAACATAAAAATAAGGCACAGTATCTG # Right flank : AAATACGCCTCCGGTTTGATGACGCAAGGTGGATGTCCGTCTTTGGCCGCGCAATTCCAGACGGATTTTTGTCAGTCTTTCTTTAACGGAGCGGGAGGAATGAAGCTGTACGTCCAGAACATGGCGCCGGTTGCGGAGGTGATTCCGTCCATGTTAAGATAACGGGCCAAAAGCAGGGAGGGGGAGGAGTGCCCCATCTCCTTCTGAAGAAGGTTTTGATTGCAGAAATGGGCCAGGTGATAGGAGGCGTAGGTATGCCTCAGCACGTCCTGCACCCATCCGCTTTTTTTCAGGATGCCGGACCGGCGCCTTACTTCCCTCCATTTCTTTTCCCAGTTGGGCGGGCAAACGGGACGGGAGGGGGAACCGGCGGAAGACGTCCGGCTGAGGATGGCGCCCAGCACGGGAAGGATGGAAACGTGGCGGCTCCCGCCTGTTTTGGTATGGCTGGGCGCCAGTGAAACCAGGCCGGATTTCAGGTTGATGTTCTTCCAGGTCAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGTACTGTGCCTTATTTTGGATTCAAGGCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 2 2707095-2706861 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033388.1 Akkermansia muciniphila strain CBA5201 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 2707094 33 100.0 34 ................................. CGGTTCCTCACTTTCCGGACCAACTAAAAAGTAG 2707027 33 100.0 34 ................................. AACGGATTCCGGGGATTCCGATTACACCGTAAAT 2706960 33 100.0 34 ................................. CAGCAACGCGTCCATGTTATTTCCCCTCCCGTTT 2706893 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= ================================== ================== 4 33 99.2 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTCCGCAAGGAGTGCGTGGATTGAAACCTTGGAACTGTTATTAAAGATGACGCCGCGGACCGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACGAGGATGGTGCCGGAAACTTGAGCATGGTGTTTTAGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACCCGGTGCATGGTGGGCATTACCCTGGTCCTGCGGAGATATGACAGTAACTGATCCGTACACTGGGATCGGCGTTATAACAAGAGGTGCATTTGATTCAGACATGGCCGCTATTTCTCTTAGTTTGCACTCTTCTTGCAACGACATTGCACTCAACGAAAAAAATTCACCATCTTTCTGTCAAATTCATTTCTATCGCGGAATTTTTCACCTTCTTTCTTCCTGCACGTTGTCCACCCTGCGAGCCTTTAATTCATCAAGCTTTCACCCCTCTTCACCCCAAATTCACCCCTTTTCCATGATCCCTGTCACACCTCAACTGCCTCACCCCGTCCGAGTA # Right flank : AGAAAAAGCTCTCCGAGCTTGTTTGGTCTAGAGAGCTTTTTTGTTCCATCATCTTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGAGCCAGGATGGGGTCCTGTGGTGCAGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGCAGGGCTGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCCCCGTCCTCGTCCCGGAAAACGCGGGCCAACCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTTTTCATGTGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCCCTGCGCAATGAGATCCTGCAGGATATTGGTGACGGTATTAGGGTGCAGGCGTGTGGCTTCCGTAATGGTGC # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2707923-2707433 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033388.1 Akkermansia muciniphila strain CBA5201 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2707922 31 100.0 34 ............................... GGTCTTCTCGGGGCGGACGCCTCCGTCGGCAAGC 2707857 31 100.0 33 ............................... TTTTGTAAAATGACATAGTTCCCAGACATCTTC 2707793 31 100.0 33 ............................... AAGGGCAAGGCAAAGCGGGTCAGAGATAAAGGC 2707729 31 100.0 34 ............................... AGTTGTATGACAAAAGGCGCAACTCATTACTGCG 2707664 31 100.0 33 ............................... GCGCAGGGTTTCGCGGATGGCCTGCTGCGCTGT 2707598 31 93.5 34 .........C..A.................. TGGAACTGTTATTAAAGATGACGCCGCGGACCGT 2707531 31 93.5 35 .........C..A.................. GAGGATGGTGCCGGAAACTTGAGCATGGTGTTTTA 2707465 31 93.5 0 .........C..A.................. | G,G [2707450,2707455] ========== ====== ====== ====== =============================== =================================== ================== 8 31 97.6 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTAAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCAGATATTTTTCGCAGGTCGCTTCGGGGACACGGCAGTACCGGGATGTCTCTTCTTTTGTGGAAAAGAGAATAAAACGGTTTCCGGGGAGAGGCCTACAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATGTCCCAGCATCGTGTACAGGCCTAGGTTGCCGGAGATGCGGGCTTTTTAACGCATGAAAAGCTCCTTTCCCGGTCTCCCTTCCGCCGACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGGTTTTCGTAATCCGTTGGGGTTCTGATCTTGACAACTATCATCTCTTTTTCACGGCCTGGAATCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACACCCGTTGCACTGTTGATAATCAAACCATAGACGTTCAGGA # Right flank : CCGGTGCATGGTGGGCATTACCCTGGTCCTGCGGAGATATGACAGTAACTGATCCGTACACTGGGATCGGCGTTATAACAAGAGGTGCATTTGATTCAGACATGGCCGCTATTTCTCTTAGTTTGCACTCTTCTTGCAACGACATTGCACTCAACGAAAAAAATTCACCATCTTTCTGTCAAATTCATTTCTATCGCGGAATTTTTCACCTTCTTTCTTCCTGCACGTTGTCCACCCTGCGAGCCTTTAATTCATCAAGCTTTCACCCCTCTTCACCCCAAATTCACCCCTTTTCCATGATCCCTGTCACACCTCAACTGCCTCACCCCGTCCGAGTAGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACCGGTTCCTCACTTTCCGGACCAACTAAAAAGTAGGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACAACGGATTCCGGGGATTCCGATTACACCGTAAATGTCGCACTCCGCAAGGAGTGCGTGGATT # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : GTCGCACTCCCAAGAGTGCGTGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //