Array 1 11424-13642 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCF01000049.1 Scytonema sp. HK-05 NIES-2130_Scaffold_49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================================================================================================== ================== 11424 37 100.0 35 ..................................... TTATTTTCCCAAGCTGTACTATTAGTAGCTCCATT 11496 37 100.0 36 ..................................... CGATGGTTTTAGCCAAAATAATAAAGCACAAACATA 11569 37 100.0 36 ..................................... AAGATGAAATCATCCTAAGTAAAAATATGCCTGTTG 11642 37 100.0 35 ..................................... GTAATATTCGTCTCTATACAAACCTACGACAAGTG 11714 37 100.0 34 ..................................... TGTACTCAATAACATGAACCCAGGAAACCCCGAC 11785 37 100.0 38 ..................................... ATCCCGTTATCACTTTGTTTTGCAGAGTCTCCAGGTTG 11860 37 100.0 34 ..................................... TTGTCATGTTAATCTATGCAATTACAAGAACGAG 11931 37 100.0 35 ..................................... AGCAGTGAGGGTAATAGTATCTGTTAGTACATTTA 12003 37 100.0 35 ..................................... AGTTTTGTGTTTTTTCGCCTTACAACTGTGATTGA 12075 37 100.0 36 ..................................... ACTATAAAAAAGTCAAAGGCTAGAGGTTCAAAAAAG 12148 37 100.0 35 ..................................... GAATATTTAATTATTAACAAAACCAACAATCCTGC 12220 37 100.0 42 ..................................... ACACTACCCAACCCGCCTTGCTGCCCCTCCTGGGCGACGCTG 12299 37 100.0 36 ..................................... AGCTTCCTTCGAGCAAATCCCACCGCGTCTCGAACC 12372 37 100.0 34 ..................................... TATTAACCTATCTTGAACACTAGTAGAGAATCCT 12443 37 100.0 41 ..................................... AGGCGCGATTACCCTTGTGGTTGAAGGAGACAACGCGCGAA 12521 37 100.0 35 ..................................... CTACTAGCCTTTTTTCACCTGTTCTGATTTTCCTT 12593 37 100.0 35 ..................................... TGTGTAATACCTGCTAAAGAGCGTTTCCGGCTTAT 12665 37 100.0 34 ..................................... CTGCAATTCACAAAACGAAAGGCGGCACCAAGGA 12736 37 100.0 34 ..................................... CCGTTGGCGCTTAATCCAACACTTGAAGCAACTG 12807 37 100.0 34 ..................................... AATTTGAATGGAATTTCAAGTCTTCGAGTAAGAG 12878 37 100.0 33 ..................................... CCTTGGTGAAGTACAAGTAGATATTACCTTTAA 12948 37 100.0 34 ..................................... TCGAAGCTGCCAATAGACAATTGACTAAAGAAAC 13019 37 100.0 35 ..................................... CTAATAAAATGGTATACATTCCAAAGAGATTTCAG 13091 37 100.0 40 ..................................... GCATAATCTCAACAAGGGGAACAAAGCCAAGCTTAAGGGT 13168 37 100.0 36 ..................................... CTGTACAGAGTGTGGCTTTGAATTCAAGGCAGAAAA 13241 37 100.0 34 ..................................... TTTAGGTGAAGTACAAGTAGATATTACTTTTAAT 13312 37 100.0 35 ..................................... TTATCGGATGCTTTAAGCGCTTCTAGTTTCAAGGT 13384 37 100.0 34 ..................................... CTAATTTTCTCAACATTGACCAGGTGCGTAGCTT 13455 37 97.3 115 ..................T.................. ATCGTTGCCTACATTTCGTAAGTACCTTTTTTAGTGTTACTCTTTGCGTCTTTGCGCCTTTGCGCGAGACAAAATAAGATTTATGCAAGAGATCTAATTGTGTCTGTGGTTTGAA 13607 36 70.3 0 ......GC...........GT.C...-.T.CA...TT | ========== ====== ====== ====== ===================================== =================================================================================================================== ================== 30 37 98.9 38 GTTACAATTTCTACGAATCCCTATTAGGGATTGAAAC # Left flank : TCCTATATTTTCAATTGCATCATCTTGTGGTCGGCTGATTCCTCAGTGTGAGTTACGAATCATCCAGCAAACGATTCGGCAAGGAACAGCTTTTTTGGAGCGATAGCGCAGAGCGCCCGCCGAAGGCGATCGCACTTTAGAATGGCTGTTATAAAAATTGTCTTGCTTGTCGGTGGAGCTTCCCCAGAAGGCGATCGCACTCTAAAATGGTTGTCATAATAGGTAAAAGCAACGCGATTAGAGATATCTGCTGCGCGGAAGGGTGGGTGTTTTCTTAAACGGAAGTCAAAAAATCGCTGAACAACCCATGATACAAGGCTTTGAAGAGTTCATAACCAATTTACCATCCGCGCAATCTCTCAAAAGCTTGCCAAATAAAGGTTTTCGCTTGTATGATGAAACAGAAGATTTTGGAATCGCGTCTGAAAACGGTATGCTTTTACCGATTCGCGCAACTGAACCTAGAAAACTGAATATAGTAAGCCTTTCATATGCCAGCG # Right flank : TTCACAAGTTCGTAACGAATTAATTTCAGAAAGGCTCTGCGTTACTCTGCGCTGACTCCCTTCGGGTTCACCAGTCGCCTGCGGAGGGAAACCCTCCTGCAGCGCTGGTTCACCGCGTCCCTCTGCGTTTTAAAACGCTACGAATTAATGCAAAGCTGTACTTAGGAATTCAAACCTAAGTAAGTCGGCGCAAATAATCATCACTGGTTTGTAGTAGCGCTTTAGCGCTGTTCGCGCAGCGTGGCGTCAGCCATAGCGCTACTACGAGCCAAATACAGAAATTTTACTTTTCTTTACATAGTTTGGTTTTTTCTTGCCGACTTACTTACAGTCAATTCAAAATTTATTAATTATTTTTAAAATTTGAATTTTGAATTTTGAATTCTCGCGTTCGCGTAGCGTGTCCGTTCGGCGTTCGCCCTTGGCGTGCGCTCTGCGCTCAGCCGTGCCGAAGGCATAGGACTCAGCGAGGCTCAGGTGGATAATAAGTTCAATTTTTC # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTTCTACGAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 12367-11664 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCF01000014.1 Scytonema sp. HK-05 NIES-2130_Scaffold_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 12366 37 100.0 39 ..................................... TTGCAAAAAAAACTACTAGAATAATCTCGACCATAACAA 12290 37 100.0 38 ..................................... AGAAGAATCTGCTGCTCTACATCCAGGCTCTATAAAAG 12215 37 100.0 37 ..................................... GGGATCACAATACTTTCGATAAGAAAAGAAGCGATCG 12141 37 100.0 37 ..................................... TTCTTAATAATTACGTCTTGAGACGCCGGAAAGTTAC 12067 37 100.0 37 ..................................... TTCTGCTGAGCAGAACTGACAAGGCGCATTGTCACAA 11993 37 100.0 35 ..................................... AGGAAATTGTCATCGAGGAGCCAGAGGACTCGAAC 11921 37 100.0 35 ..................................... CAGATTGAATGCAATGATGCTGTGAAAATAATCCA 11849 37 89.2 39 .G......G.......................T...C GACGGGAAGAGCAAATCTGTTACTGCTGTATGCAGCAAG 11773 37 73.0 36 ...........T.......G.CAA.T.T.C...TG.. GGTTGAAAGGAATGTCACCTTCCCAATACTAGAAGA 11700 37 70.3 0 ..G....A.G.T..G.T.....AT..AA........T | ========== ====== ====== ====== ===================================== ======================================= ================== 10 37 93.2 37 GTTTCAACAACCATCCCGGCTAGGGGTGGGTTGAAAG # Left flank : TAATTCACTAATCTGAACCTTGAAAATATAATATTGTTATAACAGCGCCGCAGTTCATGCTCTTTCGAGCCTCTGTACTGTGAAAAATCTGGGTTAGTTTGGCAGTTGTCAGACTGTCATGCTTTCTGACCCTGGTAGCTGCCCGCTTCTGATGCTGCCATCTGTAGAATTCTATAGATGGGATAGGTGCGCTCCCAGCAATAAGGAGTAAGGCTTTTAGCCATAGTCGTTATTCATAACGGTGTGGATTACCACAGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAACCCTCCCAAATATTTTTTTTGGCAAAGCGAAGCGGGGGCGAAATCCCTGGAGTCCTTGCCAAAATCTTAAAACCCTTGTTCTATATTAGTTTCATAAACTAAGGTGTCAATTGATTTAGTTTTTTCAAATTAGATTGAAGAAGCTTTTTAGCAGCATTGTCAAATTTGTATGCGAAAAGCTTCAGTAACAAGGGTCTAGACGGGCAGA # Right flank : TAATCGCTATTTTTTTGCAAAGAAAAGATTCTACCAGTTATAAAAAAGCAAGAGTGACAAACAATTAGTCGTTCAAACAAATGACAAATTGTTTGTCGCTCTAAAGTATCCTAGATTACTTGACTATACGAGTTTATTTTTTAGGGATTAAGCTCGGGGAAAAGTTTGTGATCTACTGACATTCAAGTAACACTGACAAATAATTTGTCACTGTACAATACTCAATAAGAGTCGGCTACATTAAATGACTATAAGACAAATAATTTGTCGCTTTACCACTTTTGACAAATAATTTGTCGCCACGGTCAAATAATTTGTCGCTCTACATTTGAAAGCGGGCGATGGGACTCGAACCCACGACGTTCACCTTGGGAAGGTGACATTCTACCACTGAATTACACCCGCAAATGGATGTTAGCCTCAATAAAGCTAACCCCCATTATAACACGATTTGCCCATTTCAACCAGTCGGTGGCAGATTCCTCACCACTCGATTTTCT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACAACCATCCCGGCTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-13.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [25-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 13718-11244 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCF01000015.1 Scytonema sp. HK-05 NIES-2130_Scaffold_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 13717 37 100.0 34 ..................................... TTAATTGCTTGAGAAGAAGACATGGACAGAGTTG 13646 37 100.0 36 ..................................... TTATCTGCCCAAACATCTTCCTCCACCTTGGCGATG 13573 37 100.0 34 ..................................... GCAGCAAAGGTATCGGCACTGAAAAATAAAGTAT 13502 37 100.0 33 ..................................... GAGCTAACCTTTCGGCATCACTACGGCTAATAC 13432 37 100.0 35 ..................................... AAGAACATCACATACTTGGGCAATAACTTCTTCGG 13360 37 100.0 35 ..................................... TAGAAATAAAGTCTGGAGGCACAGAAAAGAACTGG 13288 37 100.0 38 ..................................... AGATACTGGTGAATTTTAACGCGCCTTGCTGAACGTCT 13213 37 100.0 34 ..................................... GTCTTCACTTGTTCTAGCTCAATGGTCTTATCCG 13142 37 100.0 36 ..................................... ATACGCTAAGTTGTTTAGTTTCTCACTTACTCTTCT 13069 37 100.0 35 ..................................... CAATTAGTTCCTTTGGCAAAGTTAAGGCTTTTCCC 12997 37 100.0 34 ..................................... TAGAAAGGAGTGTCAATAGTGGTAACTCGGAAAA 12926 37 97.3 35 A.................................... AATACCGTTAACCATCGCGAAGCTCTACTGCAAGC 12854 37 100.0 34 ..................................... CCAAGGAAATACCTACATTGCACTACCGCTAAGA 12783 37 100.0 33 ..................................... TGGGAGCCAGCGTTACTCCTTTTGCGATCGCTC 12713 37 100.0 34 ..................................... TTTTATAAGAATTACTCTCGACGCCTTGAGAATG 12642 37 100.0 33 ..................................... ATCTTTAATGTGGTGGCTGCTATTTTTTACGCT 12572 37 100.0 37 ..................................... CCGCTTTGTTTGCCCCTAGGGCAGTTTTTGCAATGGA 12498 37 97.3 34 A.................................... ATTTTTCTACACAAGATGAAGCAGTTAGTGCAAG 12427 37 97.3 35 A.................................... AGGAAGTACTCTTTTATGTAATAGCATATCAAATC 12355 37 100.0 34 ..................................... ACTATCTATACACTCCCTTAAGCTAAGTTGATTG 12284 37 97.3 34 A.................................... TGATGATAACCTTTTTCCCGATGCTGCGAATCCT 12213 37 100.0 37 ..................................... TCCTCTATCTGCTTGTTCAGCGATCGCTTATCCAATA 12139 37 97.3 35 C.................................... GGACGATTAATGTACCGTGGCGCGCTTGATGCTGT 12067 37 100.0 34 ..................................... TCGTTGATGATAGTGACATCGGGATTACTAAAAA 11996 37 97.3 33 ...........T......................... ATATGCAAAAACATTGAAGCACGGCTAGATGAG 11926 37 97.3 34 ...........T......................... GATTGAGTAAAGTTATAACCTTTGCCACTTTGGT 11855 37 97.3 35 ...........T......................... ATCTGAGTGGGCAGTGAGGCACGCAGTAAATCCCC 11783 37 97.3 34 ...........T......................... ACGATTCACCCGCAATACCGCAGGCAATCGAGAG 11712 37 97.3 35 ...........T......................... GGATCAGAGATGCATCTATCTTAGCGATTGAAAAC 11640 37 97.3 35 ...........T......................... GGCAACGATTGCTTCGGCAAGCTTGGCAACTCTGG 11568 37 97.3 38 ...........T......................... CCAATGCAGCCGGGCGCAAGTTCTCCTAAAAGAAAAGG 11493 37 97.3 34 ...........T......................... CTTGAAATTGAAGATATGCCATCTATTGAAAAAG 11422 37 97.3 34 ...........T......................... CGCATAGCACACGCCGAGACCTACTTTCGTATAA 11351 37 97.3 33 ...........T......................... AGATCTCGGTCTTCGAGATGCGGCTATTTTGCA G [11331] 11280 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 35 37 98.8 35 GTTACAATTTCCACGAATCCCTATTAGGGATTGAAAC # Left flank : TATCTTCGTTGCTCAGACGGAACTCATCTGGTCAAAAGAACAATTCAATTGCAAGCAACTTGTGCGAAAATTTCCATAGGTCATGCCTTGCGTTTGAGTTTGAGTGCAGCGTGTTTCCCGGCTTATGCGATGAATCCTGGGAATAATTCAGCATTCGGTATAGATGCTGAAATTATCACATTGATGGTAAGTTGCGGGGGTGAGAGTTCATCGCAAATTTTATTGCCTGTCGTACCATCATCTTGATTCATCTGCGCGGAGGGGTGGGTGTTTTTTTGGACTGAAGTCAAAAAATCGCTGAACATCAAATGACACAAGACTTTGGGCAGATAATAACCAATTTCTCATCCGCGCAACCTCTCAAAAGCTTGCCAATTCAAGGTTTTTGCTTGTATGATTTAGGAGAAAGTTTGAGACTTGCGTCTGAAAACGGTATTCTTTTACCCATTCGCGCAACTGAACCTAGAAAAGTAAATATAGTAAGGATTTCCGGTGCCTGC # Right flank : ACTTGATAATTAACACGCGATCGCATTAACCCAGGTTACAATTTCTACGAATCCCTAACCTCGCGTAGGGTACTCAGTAATGCTTGAGCGGTGAAGGGTTTTGACAAGAAGTATTGGATGCCAAAACTTCTCTTTTGAGCAGTCGTCCAATTGCTCATCAGCCCGCTCATTGCAATGATTTGCACGTGGGGATTCATGCGTTGCAACGTGAGAATTGTGGTAGAACCATCTATGCCTGGCATCATCAGGTCTATCAACACCACACTAATCTCATCCTTGTACTGAGCGTAGAGTGCAAGTGCCTCAATTCCATCGCTGGCAGTTAAAACCTTATAATTATGGCTTTCCAAGGTACTTTTAGTGATTTGGCAGATAGTAACTTCGTCATCTACGACCAAAATCAATTCGCCATGACCATTTGGTAGTTCTACATCGGTTGCTGCTGGAGTTTCAGTGAGTTGGCTACTCGGCAAATACACTTGAAAGCGACTTCCCTTTCC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAATTTCCACGAATCCCTATTAGGGATTGAAAC # Alternate repeat : GTTACAATTTCTACGAATCCCTATTAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 39556-40377 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCF01000016.1 Scytonema sp. HK-05 NIES-2130_Scaffold_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================= ================== 39556 35 97.1 36 ............C...................... GGAATGCTTTTCCAGAACGTAGTCCAGTAAATACTG 39627 35 100.0 37 ................................... TATTCAGTAAGTACAGATGGAACCTGTTGGGGTTTGC 39699 35 100.0 37 ................................... TTCTGCCACTCTTCAGATAGTCTACGAGGAAGAACTG 39771 35 100.0 34 ................................... TATAATTTATCTTCTTCAATTCCTCGATAGAAAG 39840 35 100.0 37 ................................... GCGAACAAGTATAAGGGAAATACTTTTTTGCAATCAG 39912 35 100.0 36 ................................... GAGAATTTTTTCATCGGGCTGAGCAGAAGTAGAAAA 39983 35 100.0 35 ................................... CTTCAGATAAACTTCCAGGCAGTTTCCTGGAACGA 40053 35 100.0 38 ................................... TCAAAAACTTTTTCCTCTTCGCTGCCATCTGTCGATAT 40126 35 100.0 39 ................................... TCATAGTCGTAGATGTCATTGATGGAATAAAGACCAAAG 40200 35 100.0 37 ................................... AAAATGTGATAACTGACACCCTATTCAGGAGTTTTGG 40272 35 100.0 35 ................................... AAATGAACCCAACCCATAGTAAAGGCTGGAAATAA 40342 35 97.1 0 ..................................T | A [40356] ========== ====== ====== ====== =================================== ======================================= ================== 12 35 99.5 37 GTTTGACTCTTGTTAAAGAGAAAAGGTGCTGAAAC # Left flank : CTTACCATGCCGCATCGCTTTTCGTTGCACAGATGCTATCTCTGGTCGCATGTCGGCTCTTGAACTGGAGAAGACGATTAGCACACAGAGCGATCGCCTAGCTACCATAAATCAGCAAATCCAACGTTTGCAACAGCAACAACTGGGTACTCGGTTGCAACGGGGGATGCAGTTAGCTCAGGAATTGGAGCAATTGAGCGCTGAGAGAGAGGAGTTGGTTGAGCAGTTGAGACAGAGCAATCAAAGAATAATGTTCAATTGGAAGTAAGCGACATTTGGAGTGTTTTCTTGTTTCTTTGTGATATTTTATGGGGGATGTAGGGAATCGCTCAAACCCTTATTCTGTCGTTGTATGCCGCAAATGCCTTTCCTGGTAAGGATTTGAAGTGTCCGTGGTGTTGATTTATTGAGAATTTTTATGAATTATTTGCTCTTAAATTTGACACCCACAAATTGGGGGGTGTAAAATGCTCTTACCACAAGGCTTGTAGAAGCCAAGG # Right flank : TTTGTCGCTCTCTTCAGCACCAAAGCCTTTTATCAAGATTTGACCATTATTAATCAGCAAAAATATCAACTAAAACGCCCTATTTAGAACTAGTGGCTCTAACATTTAAACTTCTTAAATTAATAGGAAAAATTCATGTTGCCGTTACCAGAAACATTACCTAAGTGGTACACAGTTGAAGACACTCAAGAAAGAGGATGGACACCTGAAACTAAAGATATTATTGAAGGCAGTGGCAAGCCAGAGGTTATTAAGGCTTGGAAGAATGACCTGAATCTACAAAACTCAAAAAAGTTCACTGTTCGGCTTGATAGATTGCAAATTATTAGTCCCATTCAGGTGGGAGGTGGCAGTGTTTTTGAAGGCGGTATATTACCCGCTCAAATCGGTGGTGTTCCCTGCATTCCTGGTTCAAGCATTAGAGGTGTTTTACTAAAGTGGATAAAAGCGAAATGGGAAGGTTTACTAAGCAATGAAAGGGATTTTTGGCAAAGTTTAAT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACTCTTGTTAAAGAGAAAAGGTGCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 42251-43159 **** Predicted by CRISPRDetect 2.4 *** >NZ_MRCF01000016.1 Scytonema sp. HK-05 NIES-2130_Scaffold_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 42251 37 100.0 33 ..................................... GAAAATGTTGGAGGCGATCGCCGCGATGGACTC 42321 37 100.0 34 ..................................... TTCGCTATTGTTATCGAATGAATCCAGAGCATTG 42392 37 100.0 36 ..................................... TTAGTGGAATCAACTGAATAACTTTACCGCATAACT 42465 37 100.0 34 ..................................... TTTGACGATGATGTGACGGCTCAGTGTACGTAGC 42536 37 100.0 34 ..................................... TATATTTGCCTTTGTACAACGTTCTTAGTTCATC 42607 37 100.0 36 ..................................... TTCTCAGCTTCTTCAGCTTCGACTGCATCTTTGATA 42680 37 100.0 38 ..................................... CAAATCTGAGAATACCTAGAAATTTAGCAGCTTCGGAG 42755 37 100.0 38 ..................................... TACGTCACGTTATCCCCGCAGTATGGCTTGGTGAGAAG 42830 37 100.0 41 ..................................... TCTTGATTAAAACTTCTTAACATTGCTTGACAAAGAGTTAA 42908 37 100.0 36 ..................................... TCCTGGGTGAGATATATCGGCTTCGTTTCTTGTTTC 42981 37 100.0 34 ..................................... CCGTGAATAAAGTCTATTGCTGCTGCAAATAGCC 43052 37 100.0 34 ..................................... AATAACATCCATCGAGCAATAAGCAATGCATCAC 43123 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ========================================= ================== 13 37 99.8 36 GTTGCGACCTCTTTTAAAGAGGAAAAGGTGCTGAAAC # Left flank : CGGAATTTAGCCCAGGAATATGGCATATCTGTTTTGTCTAATCCTGTTAAAATTTCTGGTAGCATTATTAGTATCTGGCAAGGAAAAACAAAGTTGTGGGAGAATTTGGTGCATGGTGTTTGCAGGAGTGCAGATAACCCAAACAATCCCAATCCAAATCGACCTTGTTGGTGTGGTAATTCTGAAGACCGTCCATCTGGCTATGCAGTACGACAACATCAAGATTTTTGTTTAGTTACTGTATTTGATCCACAGGTGGAAGCGACATTGAAGCGTTTGGGGTTTCAACAGGTCTGGTGTTGATCATTCCTTTGACAATGTTGCGCGGATCAGGAGAAATGGCTGAAATGACGAAACTTCGTTGTCATCCGCGACGTAGACCACATAAGCGTTTCAGAGAATTAGACCTGTGCAGTTCTGGCAGATTGTAGTGATAATTATCGGGTTCCGCGCAAATGGCGGCTGGACACTAGGCAGGATAAGGGTTTGAATCAGGGTGA # Right flank : TCCTTCAGTACCGAAAACCAAGTCATACCAAAATAAAAAGAAGCGAAGCCTTTTACCCGCTTCGCTTCTTTAAATTACTAATTACCAACCTAAAATTATCAATACCTTAACATCAAGTCTTCAGCCATCTAAACCGAATCATTCCTATCTTGAACATCTTTTAATCGCATTGTCCAAAACTGGATCGTATCAGCGATTTCAATCAATAAATCCGTTAATAATACCTGTTGATTAAAATTTAAATTCCTAAATCTATCCTGAAAGTCAGCCGTTGTCATCTCCGGCTCAATTTTTAAATCATTACCTACAATCTTACACAAAACCACCCGTGCAACTCCCCAAGCAAAATAACGCCGTTGTTCGTCTGAACCCGCTTCTGCATCGGGTATTATTCCATCTTTTAAAACAGGGGAACGCGACATTGCCCAGAAGCGTTCCATTCCCCAACTTGACACATAATCAGCAATACCACTGGCTGCACCTTGCCAATCTTTTAATTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGACCTCTTTTAAAGAGGAAAAGGTGCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //