Array 1 700484-699493 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001904.1 Dickeya chrysanthemi NCPPB 516 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 700483 28 100.0 32 ............................ CTCTGGTTACATAGTCACCGACTGTAAAGCGG 700423 28 100.0 32 ............................ AGATAGCTCCAGGCCTCTTCACCGCGCAGTTC 700363 28 100.0 32 ............................ TTCGGCGGCTTCACTTCCCCCGGAAAGGTGAT 700303 28 100.0 33 ............................ CCGATGCAATTCGGCGTGGTAAATGGATACTTC 700242 28 100.0 32 ............................ ACCAGCCTTTGCGCTGTAGCACAGGCTCCAGT 700182 28 100.0 32 ............................ ATCTGGGCGGCGGTGCAGTGATGTTACGAAAG 700122 28 100.0 32 ............................ CCATCGGGTGGGCAATAACCCCGCTTGGGCGC 700062 28 100.0 32 ............................ AGAAAGCACAGCCCCTGTGTCGTCAAAAAGCA 700002 28 100.0 32 ............................ GGAGCACAGCCGCCACAACGGGTCGGACAAAC 699942 28 100.0 33 ............................ GGGATCTGCGCGTCGCATTCTTCGCAAGTAAAC 699881 28 100.0 32 ............................ ACCACCACATCGCTTCAGCCCAAGCCTGCGCG 699821 28 100.0 32 ............................ CCGCGCCGCTTGCACCCGGTGATCGATGCTGA 699761 28 100.0 32 ............................ TATCCCCAGCTCCGGGAAAAATGACAATTCAC 699701 28 100.0 32 ............................ AAACCGGAGCACGGCTATACTGTATTCATCGG 699641 28 100.0 32 ............................ GCGTGCAGACATGATTCATTCCTCGAAAATAA 699581 28 100.0 32 ............................ AGCGGCTGCTGGCGGGGAGGACATCGTGGATG 699521 27 89.3 0 .......................-..CG | GG [699498] ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.4 32 GTTCACTGCCGGATAGGCAGCTTAGAAA # Left flank : CGTGACCGAAGTGCCGGTGCCGAGCATCACCACGCTGGTATTGGCAATCGGGATATTCCAGTACAACGACTGATTCCCCTCTTCGGTGACATATTCCACCCGTCCGCCATTGACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACCGTTTCTCTGTTGTCGTGATAAAGCAAACCCACCCGCGTAATAACACGCAGGCTAATAATTAATTGGAAAACACGTAATACACTGGAAAGTAACGAGAATTAACCTATCACAACCCAAGCGGGAAAGTGAATGACGCCCAAAATACTTTTCTTATTTTTATACCCTTTTTTCAGCCGCTATTTTCGATACTTAAAAATCAATCAGTTACCGATAGCCGAAAAAAAAGGGTCTGACGGCGAAAATCGACAATTGCGAGCTGAAATACAACGGGTTAGAGTCAACAGGCTACA # Right flank : GGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCAGGACGCCGCGAAAGCCTGTGCCGTGCATGGAGCACGTCACAGGCGGTCCGAGCAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCACCCAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATAAAGCCGCTAAGAGACGATGCGGTTAATCACGCACGAAACCCTCATTCTACCGATAATCCTCACTATCTAACGCCCGGGAAAGGGCAACCTGTCAGAACGACGTCCAGTCGCTATTGCTGCCGACGGCGGCGGCCCGCCTTTCAGTCGCGGCCGGGCGAACCGGCAGCGCCGGAGATAGCACCGCTGACTGACGGGCTGGCGACGTTGCGCTGCTGTTACCTTGCGACGTCAGGCGAAACGCGCTGACCGCTTCGGCCAGTTGCGCGGCTTGAGACTGCAACGACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGGATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGGATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 709062-709331 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001904.1 Dickeya chrysanthemi NCPPB 516 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 709062 28 100.0 32 ............................ TGCTGGTAAAAATCCAGGTGACGGAAGCCGTG 709122 28 92.9 33 ........................AG.. ACGAATCCAGCAACAGATAAGCATTGGCGGTAC 709183 28 100.0 32 ............................ CGGAGGAGCTGGTTCAGCCGGGCGAATACTAT 709243 28 100.0 32 ............................ GTTCTCAAATCCACAACTGGGGATCATAGATG 709303 27 82.1 0 ...........CA..........-..CG | GG [709324] ========== ====== ====== ====== ============================ ================================= ================== 5 28 95.0 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : AGGCACTGACGGCGCTGGAACAAACTGGCTGGCCCACAGGGCTGCGCGACTATAGCACCATCACCGACGCACTACCGGTGCCAGCGGGTGCGCAGTACCGCACCGTGCGCCGGGTGCAGATAAAAAGCAGCGCCGAGCGCCTGCGCCGCCGGGCGGTGAGTAAAGGCAGAATGACTGAGGATGAAGCCGATGCCCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCATATCTGCCGCTGCGCAGCCTTTCCAGCGGACAACCGTTTTTACTGTTTGTCGAACACGGCCCGCTGCAGGACAAACCGGTCGCCGGTACATTCTCCAGCTACGGCTTAAGCGCCATCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGCGTTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAGGGTTTTCCCGGTAAAACGGCAGTTTTTCTTTAACAATCAGGTAATAAGCGATTATTCGCTACA # Right flank : GGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCATGGATGCCGCGAAAGCCTGTGCCGTGCATGGAGCACGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCAACCAAGCCAGTGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTAGCAAAGAAGCGACACCGTTTATCCCGCACGAAATGAACCACCGCCCCCTCATACATTCGACAAACGTATTTGTCAGCCATACCCCGGCTGTGTGTCAACAGCCCTATTCCTGCACAGGAATAAAAAAATCCCCCAACCGTTGCCGGCTGGGGGAAAGGGCGTAAAAAAAGTGAAAGGAATAACTTACTGTACGGCGGCGAAAGCGGCGGCGACGCGCTGTACGTTGTGGTGGTTTAACCCGGCAATGCAGACACGGCCGCTGGCGATAAGATACACGC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 715245-714257 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001904.1 Dickeya chrysanthemi NCPPB 516 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 715244 28 100.0 31 ............................ CCGGAGAAAACCTTTTTAATATCATTAAAAA 715185 28 100.0 32 ............................ AATTGATAGTGGCGATCCTTGCACCGTGGTTC 715125 28 100.0 32 ............................ TGCTCAGTTACTCAGATTTCACGTACGAGCCG 715065 28 100.0 32 ............................ TTTATATATCCGGCGCGTTCTCTTACGAACTC 715005 28 100.0 32 ............................ TCCCCGGAATACCAAAACTCAAACATGGTATC 714945 28 100.0 32 ............................ AGCAACTGATGGGTTTGATTGTTGGGCATCCA 714885 28 100.0 32 ............................ CGCTTATCCCGAACTGTCGGCCGGATTGCACC 714825 28 100.0 33 ............................ CTCTGGCACTTATAGCCTTGCGCTTGCCGCGCC 714764 28 100.0 32 ............................ ATACGGGGCGCTCACCATCGACGGCTACCAGC 714704 28 100.0 32 ............................ TAAATACTGACACCAAACACTTCCTGGAAGTG 714644 28 100.0 32 ............................ TAGGGCATCTACGCGAACACGAATGTTTCCAT 714584 28 100.0 32 ............................ TGAATGGAGTATTGTTTTGTCACCCAATGTAG 714524 28 100.0 32 ............................ AAGGCGACGCTGAAACGCGAACTACTGCCCAA 714464 28 100.0 32 ............................ GAGTCTTCATTGACTTCCAGATAGTCGAAAAG 714404 28 100.0 32 ............................ AGCCAGGCCCGGTGTATTGCGTGCCGTCCGGG 714344 28 100.0 32 ............................ TGTTTCAGCAGCAATCGTGGCTCAGACAGATG 714284 28 96.4 0 .............C.............. | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.8 32 GTGCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GTGACGGAAATCCCGCCCATGGCGATATCGCACTGACCGGACTGGAAATCCGGCATCAGGGTTTTCCAACTGGTTTTCACCCACTCCACCTTCACACCCAGGCTTTTCGCCAGCGAGCGGGCCATCGCGATGTCGATCCCTTCGTAATCGCCATCAGCGCGCAGCGACGTGTAAGGCTTGTAATCGCCGGTGGTACACACTTTCAGCACGCCACGTTCCTGCACCTGGTCAAGATGAGACGCCGCGCCGGCACTGCCGGCCAGTCCCAATAACAACATCAGTGAAAATCGTTTTTTCATACACGTTCCTTACACGCCTGTCTGACAAAAACGCCACTGTAGCACGCCGTTTCCACCGATGCCGGTTTTGACCCTTTTTTTTCACTCCGTTATAACTCATTGATTTTTAATGACGATAAAGAACGACTTAAAAAAAGGGTTTCACAGGGAAAAACGCTATTTTTCCTTTTCACATCAAGCCATAAGCGATAAATTGCTACG # Right flank : AGGGCGTCGGCGGCGTAGTATTTTAACCGCCAACCCATGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTAGCAAAGAAGCGACACCGTTTATCCCGCACGAAATGAACCACCGCCCCCGCATACATTCGCTAGTCAATAACGAGGCACCCCGGCTGTTTACCAACATCCCAAAAACGCTATTCTGCCGCCAGTACCGACTGCGCCCCTTTGCGCTTTTTGATGGCATAACCCGCACCCAACGCCAGCAGCCAGAACGGAATCAGCCACACGGAGATCTGAATGCCCGGCGTCATCGCCATGATCACCAGAATCCCGGCCAGAAACAGCAGGCACAGGATGTTGGTGAACGGGTAACCCAGGCTTTTAAAACGGGTTTCCTGATGTGCCCGCTGTTTAGCCTGGCGGAATTTCAAATGCGTAATGCTGATCATCGCCCAATTGATCACCAGTGCAGACACCACCAACGCCATCAACAGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //