Array 1 269544-270419 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKF01000005.1 Akkermansia muciniphila strain GP15 scaf-5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 269544 31 100.0 34 ............................... GTAAAAAGCAAACGCTCCGCCTCCGTCCGGTCCG 269609 31 100.0 34 ............................... GAAAAGACGGAAGCTTTTGCTTTGTGGATGGACT 269674 31 100.0 34 ............................... CGGTACGGAGGCCCGGAGATAGTCACTTGCCAGG 269739 31 100.0 34 ............................... GGTGAAAAAGAATGGAAGTTGCTTTACTTTGATT 269804 31 100.0 34 ............................... ATTATCGTCGATAAACATTAATGCTCCGTCATGC 269869 31 100.0 34 ............................... TGTACGACCATTTTATCCCATTGGCAACGGGAGT 269934 31 100.0 34 ............................... ACAAGAGATAAAACGTCACGGTCAATTACAACTT 269999 31 100.0 35 ............................... CCCCCAGGCTCGGGGATTATCAGGAATTTCCACTG 270065 31 100.0 34 ............................... ACGGACGTTACAGCTAAAATAACACCCTTAACAG 270130 31 100.0 33 ............................... ATAATGGCGTCCGTTGGCTCCTGCCTGGACAAG 270194 31 100.0 33 ............................... GAACATGCCCTGGTGGGGCCTGCATGCCTCCGT 270258 31 100.0 34 ............................... CTGCGCAAGAATAACGCCATGGGCATCAGCCCGG 270323 31 100.0 34 ............................... GGCGTCAAAGTCCAGTTTAAGTTGCCCGTCGTCC 270388 31 87.1 0 .....................A..A....TA | G [270401] ========== ====== ====== ====== =============================== =================================== ================== 14 31 99.1 34 GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Left flank : GCCCTGTAAGGGATATTCCGTCATTCATTCGTTAACGGGAGCCGTCCGCAAGGGCGGCTCCTTTTTAATGGCAGCGGAAACCGGAGGGGAATTCGGCTTCCGGCAATGGAGAAAACGGCACGCCGCCCGGGAGGCCTGTTGTTTATGTGTCTCCATGTTGGCGGCTCCGGGGATGCACGGTTCTGTTTGAAGGAACGTGGAAGATGTTGCTGGACGCGGCAGAGGGGAACGGCTAGCATCAATGAACCAAGTTGAATGCAAGCCGGACCGGACGCGGCGAAGATGGAATATTACGGAATAACGCCGCGTCTGATGCCGCCTTGCGCCAACCCCAAGCTCACAGAAAATTCCCGGGAGACCGGCGCTTGCTGCAAGTGATTGGGAAATGGATATTGACAAAAGAATCACCTCTTATCGGACCTGACCGTATCCGGCTTCCGCATCAGGTTGGCGCAAACCCCTTGCTGCGCCCTTGATGCTCAACCCGTATCCTTCAGGCC # Right flank : AGTGCAGTTGTTTTTAATGATGTCTGCATGGTAAGGGAGGTGATTATTTTGATAAATGGTTTTAAATGGTTATTTATTGAATATTCTTTTAAGGAGGATTTTTATGTTGGGGAGGACGCCGGATGAACAACTTTCCGGATGGTTTATTATGATTTCCGGACAGCCTGTCCGGAAAAGGGAAGCAGGCAAGCGGTGCATTTCCTGCGGCATGGGATTTTTTTCCGCGTTCACAGTTTGTGATGGATGAAGCCGGAGCAATCCAATATAAAGATAAGATGCATATAGACTGGTTGAATGATTTTTTGGAATGGACGCCTATTTTGCTGATGGTGCTGGTAGCGGTCGTTTTTCTGGTGGCGCTGAAATGGAGAAGCGGCAGGATGAAGAAGTTTCTGGAGGAGTGGAAACGTAAGATCGTCCGGCAGGCGGAAGCCGGGAATCCCTCCGCCCAGTTCCGTCTGGGGCGCATTTACCAGGAGGGGGACGGCGTGGAGAAGGAC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 169924-171507 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKF01000006.1 Akkermansia muciniphila strain GP15 scaf-6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 169924 31 100.0 33 ............................... GCCAGACAAGCCAGCTCCCTGACGGCCTCCATG 169988 31 100.0 33 ............................... TGATAATGAGTTAATGAGCGGAATTGCCGTAAA 170052 31 100.0 34 ............................... AACTAATTTTGAACAATGGGACAACGAATTTGAT 170117 31 100.0 34 ............................... CTCATTAAGCAATGCAGTTATGAATTCATCTTGC 170182 31 100.0 34 ............................... TTTGAAAAATAAAAAAGAAATTGAAAGACCAGAA 170247 31 100.0 33 ............................... CGGAATATACGGCTCAATACCATCTCAACACTG 170311 31 100.0 34 ............................... GGGTCATTGTAGTACCTTCGCTTGATGGACTTTG 170376 31 100.0 35 ............................... CCGTTGCGTTTCATCCTTCATTGCTGGTCCGTCCA 170442 31 100.0 34 ............................... CGTGTCTCCTGGCGCGTCCTGGTTGTAATTGGGG 170507 31 100.0 34 ............................... TTCCGGCAAGGTGCTGGTAATATCGTAGCCAGTT 170572 31 100.0 35 ............................... AAGTATCTTGGCGCCGAACATCAGGCCCAGGGAGG 170638 31 100.0 34 ............................... TTTGCCGTGCAAATAAGGTGCTGCGCCCACCGTG 170703 31 100.0 31 ............................... TGGTGATACTAATGCTGGTGCTTTTGAAAAA 170765 31 100.0 34 ............................... TCATTACATTTTATATCTATATCCAACTTTTACC 170830 31 100.0 33 ............................... TGCTAATCAAAAGGGGGATAATTCCCCCTGCAC 170894 31 100.0 33 ............................... CGGAACGCCCATTAAAAGAAGGCGGCTTATTTG 170958 31 100.0 33 ............................... CCGGACAAAGGACACGCACGGAGCAGCCCATGC 171022 31 100.0 34 ............................... TACATCGCAATGGGAGAAAAGAGGGGGATGGAAA 171087 31 100.0 35 ............................... AACGGAGATTTGAAGATGGTGCCGGAGCGGGTAAA 171153 31 100.0 33 ............................... TTGGTCGTGCAAATAAGGTGCTGCGCCCATCGT 171217 31 100.0 34 ............................... TTGTAAGTGCCCACAGCGGTGCGGACTCCTACTG 171282 31 100.0 35 ............................... ATAACTCCTGCCAGGGGGCCCGTGATGACTTTATG 171348 31 100.0 34 ............................... TCATTGAGCGGGCGTTCTTCGGCCCAGGGATTCT 171413 31 96.8 33 ............T.................. CGCCAAAATCTTGTTCTTGTGCGTCGTTCATGT 171477 31 90.3 0 .....................TA.......G | ========== ====== ====== ====== =============================== =================================== ================== 25 31 99.5 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATACCGTTGCTGGCCTGCGTGGCCTCCGCCGTCTCCCTGGCGCTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGTAAAAGCATTATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACGGCAGTCCCGGAGCGCCTTTTCTTTTGTGGAAAAGAGAATAAGGCGGTTTCCGGGGAGAGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATATCCCAGCATCGTGCACAGGCCCTGGTTGCCGGAGATGTGGGCTTTTTAACGCATGAAAAGCGCGTCTCCCGGTCTCCCTTCCGCCAACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTACGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTTACGGCCTGGAATATGTGTGCCTCCATGGGAGGTTGGCGCAAAACACCCGTTGCGCTGTTGATACTCAAGCCATAGGCGTCCAGGCC # Right flank : GTCCACATGTCTGCGCGGGGCGCAAGCCGCTCATGCACTGCTTCTTGAAAGAGGAGCAGATCAAAGCTTTATTTTCCGCAACCGTATCGTTTGGTGTTTGGTCTGTTCCCCTGTTATTTTAAGAAAGGACGGTAAGAATCCGTAGTGGAACGGGATGACGGCTCTCTTCCGTTTACCTCTCAGATTGGCATGGTTTGCAGCCTTTTAATGTCCGTCCGCGGCGGGTTGCCGAACATGCGCTTGTATTCCCGGTTGAATTGGGTAGGGCTTTCGTACCCAACGCGGAAGGAGGCGTTTCCTGCGTCCATGTTTTCCACAAGCATCAGGCGGCGGGCCTCATTGAGGCGGATGCGTTTCTGGAATTGAAGCGGGCTGATGGCCGTGAGGGTACGGAAGTGCTGGTGGAAGCTGGACGGGCTCATGCCGGCGCGGCTTGCCAGTTCCCCGATGCTCAACGGCTGGTCGAAGTGCTTTTTTATCCAGTCAATGGCTTTTGCTAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.60,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 123517-125164 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKF01000009.1 Akkermansia muciniphila strain GP15 scaf-9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 123517 31 100.0 34 ............................... AACTCACTGGACCGGACGTTCACGCCCAGCAGAA 123582 31 100.0 34 ............................... AAGTCAAAATCGAACGAGGAACCGACTGTATTTG 123647 31 100.0 34 ............................... TCATTAGCACAAAAAAAACGCCCCAGTGAAGGGA 123712 31 100.0 34 ............................... ATATTGTCCTTATCCCCGAGAAATTTTGAAAGCG 123777 31 100.0 34 ............................... TTCCCGCCTAAGTATCGCAAAACGGCTTTCATAA 123842 31 100.0 33 ............................... AACGAAATAATAAAATAACAAGACAATAAAATG 123906 31 100.0 34 ............................... AGGGCAATGTGCCACAGGGTCAGATCCATGCTGC 123971 31 100.0 34 ............................... CGGTTATTGCCGGGGAAATTACCATCCCTAAATT 124036 31 100.0 33 ............................... TGCAGGAAGTTTCCCATGCGATTGTATGCTCCG 124100 31 100.0 33 ............................... TCCTCTACCGTGTCTTTAAGCAAGTCGGAATCC 124164 31 100.0 34 ............................... ACCGCCGTGACTTTGCCGGAAGAATCTTTTTCGG 124229 31 100.0 33 ............................... TCCTGTTATCAGGTAGCCGCCCAGGACATTGAT 124293 31 100.0 33 ............................... TTCCCCGTTTGGGTAAGATCCAGCAGGAGTGCA 124357 31 100.0 34 ............................... AGCGGCAATACGGACATTGTCCGGGGAAAGGTCA 124422 31 100.0 34 ............................... CCAAGCAACGGGGGCGCCGTCACCGTCTCCCAGG 124487 31 100.0 33 ............................... ACCGCCCCCTAGAGGTTATTTAGCGAGCTTCAA 124551 31 100.0 34 ............................... TGCCAGCAATGGGCGCGCGTTGCCGAGCCATGCG 124616 31 100.0 33 ............................... CACGAAATGAAGACGCGCGGAGTGGCTCCCCTG 124680 31 100.0 33 ............................... GCCACAAAGGGGGAAGCGGAAGGATTTATTGCG 124744 31 100.0 34 ............................... CGCTCCGGATCAAAGTCCAGGGCAATCCCCCAGG 124809 31 100.0 33 ............................... CGTTTTGTCCCACACAACTACCCCCCGCCAAGT 124873 31 100.0 34 ............................... CCGTCGTCGTCCAGTCCGTCGGCCTTAAGCGGGG 124938 31 100.0 33 ............................... CAACGGCTTTTGCCGCTATTGACGGGGCCGTCC 125002 31 100.0 34 ............................... TCACGCTCCCCGTGTATCTCCGCCCGCAGCAGGG 125067 31 100.0 34 ............................... AACGGATGCTGATCATTGCTCCCCCGCTGGCTCA 125132 31 83.9 0 ........C....G........G....C..G | G,C [125157,125160] ========== ====== ====== ====== =============================== ================================== ================== 26 31 99.4 34 GTCGCACCTTCACAGGTGCGTGAATTGAAAC # Left flank : CTCGGAGAAAACGATGCCTCCCTCAAGGACACGGTAACTATTCGCCACCGCGACTCCATGGAACAGGAACGGGTCGCCATCAAGGACTTGCTGCACTGGCTCATTGCCCGTGTGCGTTAACGGCGCCTTTGGCGGCTGCTGATGCCGCAAAACACTTCAAGGCCGCTCCATATTGAATGGAGCGGCTTTTTGTTTTCGGAATGGCAGAGAAGGAAAAAGTTGCTGGACGATAGGCCGCTGACCATCTAGCATTAAAAACAGGTTGGTGAACCAGATGGGAATCAGCAATTCCAAAATGAATGCTGAACCGCTGATCTGTTTGCGCCAACCCCAAGCTCACAGGAATTCCCCGGTAGATCGGCGATTCCTGTAAGTCCTTGAAATCAGCAGATTGACATTCCCTCCAATAAAATATAAGGCGTAAGGAATATGCATCCTGAAAGAGGTTGGCGCAAAAAGCGATTTGTACCACTAACTTTCAACGCATATCCCCTTCCGCC # Right flank : GGGACACGTTTTGGAAGGTTGTCACACTTGCATGGAAATGTAGATGTGAACATCAAACACCAGCCTTACTAAATGGCATTTCATTAAGTATAGGTTGCTGAGGGAGAATGGACTTGGAGCCGACTTTCTTGGAGTAATAAAGAAAAATAATAGTGAAGCTTGCATCTTTAAAAAGGTAGTTTGTGATATAAATAAACCTTCTCTTCAAGAAGAATTTGTTGTTGAAGTATGGCAATAGAATGTTAGGTTTCCGTTGCATTTTGCATCAAGAGAGGGTTAGACGAAATGATTAGAAAGTGTTTGGAGTCGGAATTGGAAACAATTTATGAAATTATCAATGATTCAGCCGTGGTTTATAAAGACAGGATTCCTACCGACAGATGGAAGGAACCTTACATGCCCGTGGATGAATTAAAGGAGCAGATCAGAGATGGCGTGGTGTTCTATTGTTTTGAAGATAAGGGATGCCTTCTTGGCGTCATGGGGATTCAGGACCGGGA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTCACAGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-4.00,-4.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 134166-134664 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKF01000009.1 Akkermansia muciniphila strain GP15 scaf-9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 134166 33 100.0 34 ................................. TTCCGATTTAGGCAGCTCAAAAGGATTGATTTCT 134233 33 100.0 34 ................................. CGGGTAAGGCGTCCGGAAAGCTGTTCCGGCTCCT 134300 33 100.0 35 ................................. TAATCATATCCCTACTACAATGATAGGAATTAGAT 134368 33 100.0 33 ................................. ACTCTCTGGCAAGCATCACTGTACGGGTGAGAG 134434 33 100.0 33 ................................. CTCGAACTCATACAGGTAATCGTTCGATTTTGG 134500 33 100.0 33 ................................. TTAAAGGCGAACCCCTGCCTTGCCCGGCATATC 134566 33 100.0 33 ................................. ATGGTAGTCAGCGTAGCTTCTTGGCCGCTGGCA 134632 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 8 33 100.0 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : CTTAGCCATGTATATTCTCATTACTTATGATGTAGCTACGGATGACAAGGCCGGACAGCGGCGGTTGCGTCAAGTTGCCCGCGCCTGTGAAAATATCGGTCAGAGAGTGCAGAATTCCGTGTTTGAATGTGAGCTGGCTCCGGCCCAATTGGTTGACATCAGGAACAAGCTGCTTAAGATTATCGATAACGAGAGCGACAGCCTGAGAATTTATCACATGGGGTCCAATTGGCATCATAAAATAGAGCAATTGGGCAAGGAGAAGAGTTTCGACATTTCCGGCCCTTTGATCATTTAAAAGCTGTCTGAGCACGGCCTTTGCGCCAACCCCAAGCTCACACCAATTTCCCGGGAGATCGGCGATTGGCGTAATACATTGGGAATGGAAGATTGACAGATGAATACTTAGAAGAGAAGGCTAGATGATGATGGCCTTCTCCGGGAGGTTGGCGCAAAGTATCGTTTGCGCTGTTGAATAACAATGTATATGGTCAGGCGCT # Right flank : CAGCCCCAGGGCATTAGTGGGAATCAACTTGGAATGTCGCCCTCCGCAAGGAGTGCGTAACTCTTCCTAAAAATGAAAAGCTCTCCAGGCTTGTTTGGTCTGGAGAGCTTTTTTTCGGGTTTTGTTGTTTATTTTTCAGCCGGGGGCTTGGTTCAGATCGAGTTCTGCGGGGGGGAGAGACTGGAGCAGGGTCAGAATGGGGTCCTGCGGTGCGGCGCCCGCTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGGAGGGCCGCCAGTTTGGTATCTTCCACCAGCGCCTTGAATTTGTCCGCCTGGGAGTATTCTCCATCCGTATCCCGGAAGACGCGGGCCAGCCAGCGGCGTTTTTCTTCCGTGCTGAGCAGGGGCTCTTTCATGGGCTGGGGAGGGTGTTTTTATCCAGCAGGTTTCCTGCAAGCTGTTCCCCATCCGCGGTGGGGCGGTAGACGTAAGGGCGGCTGTCCCCGAAGCGGTTGATGTATCCCTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.00,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.74,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //