Array 1 10079-6047 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVM01000070.1 Candidatus Kryptonium thompsoni strain JGI-15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 10078 30 100.0 37 .............................. ATAAGAGCATACCATATATTCTTATCGCTCAAATTCA 10011 30 100.0 36 .............................. TATTTAACATACGCTAATGCAAATGACAACATCCGA 9945 30 100.0 38 .............................. TATGTATATCCGCAATTCCAACACCCATGCAATTCCCT 9877 30 100.0 35 .............................. ATTTTTAGTTTTCAAAATACTTTTTATCCTTTAAA 9812 30 100.0 37 .............................. AATGAGACATTAATTTATAAAAGAACTCGTAGCGCGT 9745 30 100.0 35 .............................. TTTTAATTCCCTTCTGCGACCATAAATACCCCTTT 9680 30 100.0 37 .............................. CATACAATTTTAAAATCAAGAAAATTAAAAATCAAGT 9613 30 100.0 36 .............................. ATCACTTTTGAATTTGTAAATTTTACACACAATTAT 9547 30 100.0 37 .............................. CCATTAAAGATATAATAATGTGCGTTGGGGCTTCCAT 9480 30 100.0 35 .............................. GAAGAAGATTTAGAAAAGGTTGTGACCGTTAGGAC 9415 30 100.0 37 .............................. CAAGGTCCATTTTAACCCCCATTACTTTTTTTGTTTT 9348 30 100.0 38 .............................. TTAATATTAATAATTTCAACCAAAACATGCGCGTAATT 9280 30 100.0 36 .............................. TCGTTAAAAGGGAGTTTATATCCGTCAACACGCCAC 9214 30 100.0 35 .............................. TCCCTATTCGAATAACTCGTCCGGGGCGCGCAAAA 9149 30 100.0 37 .............................. AAAAACAGGAGTGTGATTTATATCACACTGTTTTTAA 9082 30 100.0 37 .............................. TTCTTTTAATTGCCTCGGTAATGCTTATTGTTTTAAT 9015 30 100.0 37 .............................. ATTTTAAGTTCGCACACTCACGATTCAATTTATTATC 8948 30 100.0 37 .............................. TTATGCATAACACGTTCTCCACAATCACAGTGACCCA 8881 30 100.0 37 .............................. TTAAAAGGTGGTTTATATCCGTCAATATACCACCTGT 8814 30 100.0 35 .............................. ATTCTCTCCCCAAACAAATTGTGGGGGTTTACAAC 8749 30 100.0 37 .............................. ATAAATTTTATCAATTCCAACCCATTTATCCCGTTCA 8682 30 100.0 37 .............................. AGAGATGAATTAAATTTTATGGTTATTTCCGTTATTT 8615 30 100.0 38 .............................. GCAATTAATGATAGATATGTTTCATTTAGCTGGACTTG 8547 30 100.0 36 .............................. ACAACTATATAACTTGAACAAACAAGTTTATTATTT 8481 30 100.0 37 .............................. ATAAGAGCATACCATATATTCTTATCGCTCAAATTCA 8414 30 100.0 36 .............................. TATTTAACATACGCTAATGCAAATGACAACATCCGA 8348 30 100.0 38 .............................. TATGTATATCCGCAATTCCAACACCCATGCAATTCCCT 8280 30 100.0 35 .............................. ATTTTTAGTTTTCAAAATACTTTTTATCCTTTAAA 8215 30 100.0 38 .............................. TTCGATATTGTCAACTCTATCAGACAAATTTTTTATCA 8147 30 100.0 37 .............................. GCACCAATACCCATCCTTTCTCTTTCGGCGGCTTCAC 8080 30 100.0 37 .............................. TTTTGTAATTCCGTATAACTCATATCCTTTCTCTATT 8013 30 100.0 38 .............................. ATGTTTGAATTTATGCAATTTTATTTATGATTTGGAAA 7945 30 100.0 37 .............................. TTGAAAGGGGTTCTATAATTGCGATTAAATTGTAAAA 7878 30 100.0 37 .............................. ATGAGAACAAGCACTGGAAATTCCTTAACATAAATCT 7811 30 100.0 36 .............................. TCATTTTTTCCTCCATTGTTTTGTTTTTGAATTTAA 7745 30 100.0 36 .............................. AAGAGAGACAAAGAAGGGGACTGACGGGATCCCAGA 7679 30 100.0 38 .............................. AGCATAAACGAGCGCCTTGATCCACTCCTCGCCCCTGA 7611 30 100.0 36 .............................. AATATGAACAGCCAAAACAACATGCGGAGGTGAAGG 7545 30 100.0 37 .............................. ATAAGAGCATACCATATATTCTTATCGCTCAAATTCA 7478 30 100.0 38 .............................. TGTGAAATACCGCCTGAAGCTTCACGACAACAGGCTCG 7410 30 100.0 36 .............................. TAAAATTCTCTTCGCTTCATTTTCGCTTATTTCTAC 7344 30 100.0 38 .............................. ATTTTTCCCCGGTTGCTATGAACCGGGTTGATTTTTTA 7276 30 96.7 38 ........T..................... TTGTTTTAACCACCGTTTTATTTTAAACAAATCCTTAT 7208 30 100.0 35 .............................. TGGGACAACAGGATCGGCGTCAAGCTGACGAATTC 7143 30 100.0 37 .............................. GTTGGTTTGCGATTCTGACGGAAGCGAAATCGATAGT 7076 30 100.0 37 .............................. ACTACAGCCTTGTGCCGGGAGACATTGTCGAAATCGA 7009 30 100.0 34 .............................. TAGATTTTCTTATATTTTACTGCTCCACCAATTA 6945 30 100.0 38 .............................. TAAATTCGCAATTATATGCAACACCATTGGAAATAAAT 6877 30 100.0 37 .............................. CAAATAAATAATCATTCTTCTTCACAACATTGTTAAA 6810 30 100.0 35 .............................. ACCCTCAAGAGCCAGTTCTTTTGTCATTTTAACCA 6745 30 100.0 36 .............................. TATATCTTGCCAAAGCGGTATCTATATTACTTTCAT 6679 30 100.0 37 .............................. AATATTCTACACTGCCACATTTTTCACACCTAACTTC 6612 30 100.0 35 .............................. TTCGTAGCTAACTCTTATCTTGATTCTGTTATTCA 6547 30 100.0 37 .............................. ACACATTATTCCGCCGACGCCGAACGCAAATGTTTGG 6480 30 100.0 37 .............................. CCCTTGATAGGGAAAAATTGGACTGCGTCATTTAATC 6413 30 100.0 38 .............................. ATTTTTCCCCGGTTGCTATGAACCGGGTTGATTTTTTA 6345 30 96.7 38 ........T..................... TTGTTTTAACCACCGTTTTATTTTAAACAAATCCTTAT 6277 30 100.0 36 .............................. GTTTTTAGAAAGGTTTTGGGTTAGCATTATTATGTC 6211 30 100.0 37 .............................. ATTAAGTATTTCAATTGCTTCAGTCTTACATTAACAA 6144 30 100.0 37 .............................. CTATGATATACAAAAACAACAACTTTACTCTCATTTT 6077 30 86.7 0 ........T..................TTA | A [6049] ========== ====== ====== ====== ============================== ====================================== ================== 61 30 99.7 37 GTTTGAATCGAACCTGTGAGGGATTGAAAC # Left flank : | # Right flank : GGGTAATTTGTGAATTGAATTGGTGAGGGGGGGGTTAAAGCATATAGTTTGTGGAAAGCTTTTAATGTTATGGTGAGTAAAAGGGTAAAAAGGTCAGAAAAATTTTTGATAATGTGCATGTAAAGTCAGTTTAAGAAATTTTGTAAGCCGGGTAATTTCAGAGAGTGTAGCTCTTGACTTTTATTTAATTTATTGATATAATTAGCACAGAGAGGAGCCTCCAAAATACTAAGGTGGATTTAAAATGGAATTAAAGTTAAAGTGCAAAACCATAACACCAATGTTTATGGCGGGGGCTGATGGTAAAACTCCTGAGTTAAGGTCTTCAGAGTTTAAGGGGATGATGAGGTGGTGGTGGAGGGCAATAAAGGCGGATGATGATATTGGAAAGTTGAGAAAAGAGGAAGCGGAAATTTTTGGAGGGACTGGGGAAGGAGAGGGCAAAAGCAAGGTGAGGGTGATAGTAAAGCCAGGCTCAATTGACATAGGCAATGATGTTC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCGAACCTGTGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 3845-1761 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVM01000117.1 Candidatus Kryptonium thompsoni strain JGI-15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 3844 30 100.0 36 .............................. AATTAAGAGATAAGGAAATAGAGGGTGAATTAGTGC 3778 30 100.0 36 .............................. AGTGATAAATGTGAGTTTCTGCAGACTTTTTGGGAA 3712 30 100.0 38 .............................. GTATTTGTAATTTATTCCGATTGAATTTAGCGAGACAT 3644 30 100.0 36 .............................. AAATTTGCCCGAATGGATGATTTTGAAGGTTTTATT 3578 30 100.0 36 .............................. TTCGTTCAAACACAACTTCTTTTGGAGTTGGAACAA 3512 30 100.0 36 .............................. ACGAGTTCTCAAATAAACAAGATAGCGCAAGCACGG 3446 30 100.0 35 .............................. AGCGATTAACTAAAGTTAATCGGGAAAATTATTGA 3381 30 100.0 36 .............................. TTACAAAAGCATCAGCATAGTCAGGCGAACGCCCCA 3315 30 100.0 35 .............................. CGTTTTGAATTTCAGCGAGTTCGCTTGCACTTATA 3250 30 100.0 37 .............................. TGATTTGGCTCTATTTTCATCACCATTAAACTTTTCA 3183 30 100.0 37 .............................. GATGAATTGACTTGGGAACATGTAAAATATATTGCAG 3116 30 100.0 36 .............................. TTTCTTTGGGATTTCTTTATATATTGAAGCTTCATA 3050 30 100.0 36 .............................. AGTTAAATTTTTAAAGCCCTTGATTGGGTCAAAGAA 2984 30 100.0 36 .............................. CTTTATAAAAGCGAAAATATAAGTTATCAAATTGGC 2918 30 100.0 36 .............................. GACGATTATTATAAGTTGATTGATTTATTTGACAAT 2852 30 100.0 36 .............................. TTGCTACATCAAACATAATTTCAACGCAAGCGTCGT 2786 30 100.0 35 .............................. AGAAGGATTTCTGGTAGAAATTTTCTCGGTAAGAA 2721 30 100.0 36 .............................. ACTGAAAAATTATATTGTTTAAGAGAGTATTATGTG 2655 30 100.0 36 .............................. ACTGAAAAATTATATTGTTTAAGAGAGTATTATGTG 2589 30 100.0 36 .............................. ACTGAAAAATTATATTGTTTAAGAGAGTATTATGTG 2523 30 100.0 36 .............................. ACTGAAAAATTATATTGTTTAAGAGAGTATTATGTG 2457 30 100.0 35 .............................. ATATTTGTCTGAAAATTTTACGCTATGACAATAGA 2392 30 100.0 36 .............................. TCCTTTAACTCCAGTTGTGGAAATTGCAATTGAATA 2326 30 100.0 36 .............................. TCTTTTGTCATTATAAATGCCCCTGTAGAAACTCCA 2260 30 100.0 36 .............................. TTTTTGATTTTGCATTTTCATTCTCTTTTTTGATTT 2194 30 100.0 36 .............................. AAAATTTTGCTTGGCGAAACAGATGAGATTAACAGG 2128 30 100.0 41 .............................. ATTATCAGTTCAACACCTATTACCGAGGCTTATGAAGACAG 2057 30 100.0 37 .............................. AGCACGAAACTCAAATTGGTGCAACGGCTGAATTGGA 1990 30 100.0 38 .............................. GGTGCCTGTCCCTTTGCATAAGGGTTTGTCTTTAAAGT 1922 30 100.0 36 .............................. TCAGAACATATGTTTCATTATTTTCGGATTTCATTC 1856 30 100.0 36 .............................. AAATTTTCAGGATTGATAACTATAAAATTTGGAAGA 1790 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 32 30 100.0 36 GTGAGCATCGAACCAGTGTGGAATTTAAAC # Left flank : CAAAAGATAAAACTTAAAAATTTAAAAGTCAAGAGGGTAGGGTGGTAATTTGGGGTGGGGAGGATAGTGACTATGAGAGGGTGAAAGGGTTGAGGGCGGGAAGTTGTGGGCGCTTGATTTATTATATTTGTTTTGATAAATTTTTATGGTGAGTTGAAGATGTTAAGAAATGAGCACACGGTTTTGAGGAGTTTTAGTTGATGTGAGGATAGCAGTGAAGTAGAATAATTTAGTCGCGGACAGGATTTTGGGGGATTAAGTTTAGCGGTTAAATATTAATATTTGAAAGTTTGAAAAAAATTAATCAGTTTTCTCTTAGTCGCGGGCTGTATATTTTTGCATTTTGCTCCGCGACTTAATTTAGGTTGGAAAAATTTGATTTTCTGTGTAAAATTTTGTAGTTTTTGGAG # Right flank : ATGGCAAAAATTACACTGTTTTTGCCGTGTTGGTCAGCCGTTTTGTGGGATAATGGAAATTTTTATCAATCAAAGAAATATACAATTCATGTTGTAGACAGAGTTGGGAGTGGTGATGCTTTTTGTGGCGGGTTAATTTATAGCTTTTTAAAAAATGCCAATGCCAAAGATGCCTTAGAGTTTGCAGTAGCAGCTTCATGTTTAGTTCACTCAATACCGGGAGATTTTGGTTTATTGTCAATTCAAGAAATAGAAGCATTAGCTACTGGTCCCGGAACAGGTCGAATTGTTAGATAATTCTCGGGCTAACAGCTACTTAAGGCTTATAAGTTTTGCGGTTCTGTCAAGTTCAGTGAGCTTCTCTTTGTCTCAGTTCTTTTTGGAGTGGTGGACAGGTTACTTGCTTTTCGTTTAAAAAATTTGTTATATTTAACTTAGCTATGAGTCTTCTCTCATGGCTTCCTCCTTTTAGTTTAACTATCGCCGGGGGAGCAAAACCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCATCGAACCAGTGTGGAATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 366-2638 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZVM01000096.1 Candidatus Kryptonium thompsoni strain JGI-15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 366 30 100.0 36 .............................. TAAATAATCAACTTCCCCACCAAAGACACAAAGAAC 432 30 100.0 36 .............................. GCTCTCTCAAAATCTTGTTTAAATCTTCTCGTTCTT 498 30 100.0 36 .............................. AATATGGTTATGTTACGGGTCCAACTTTATTTATTG 564 30 100.0 37 .............................. ATATTCCCGGTTTGCCCACTTTAACCTCTCAAGGTCC 631 30 100.0 37 .............................. TTCTTTTAAATAATGCCTCATTTCCCCCAAATTGCGA 698 30 100.0 36 .............................. TATAATACCCCCACCACCACTCTCCATCAAACTTCC 764 30 100.0 37 .............................. TCAAGTCCTTCAGATTCAAGATATAATGTGGAATTGT 831 30 100.0 35 .............................. ATGTTTTTAAAAATCCTTCCGCTTTCGCTTTAAAT 896 30 100.0 36 .............................. GTATGAATTTTTTCGGTAAGAATTTTCTCAGTAGAA 962 30 100.0 36 .............................. CTTTTCATTTTGCATTTTCATTCTCCTTTTGATTTA 1028 30 100.0 36 .............................. AGTGGGGTCAATCAAAAGCCAAACATCTTCCTCATT 1094 30 100.0 36 .............................. CCATTTCAACCATCAGCATAATTCTTTCTGCAATCT 1160 30 100.0 36 .............................. TGGAAATAGGTTTTCTGAAACCCCTATTCCGAATAT 1226 30 100.0 36 .............................. TTTTTTTGATTTTTTTAAAAAATCGCAAAAACAACG 1292 30 100.0 36 .............................. ATGCTTTGGAATAAAAAATGCCCACTATCTTTACCG 1358 30 100.0 36 .............................. CAAATTTGGGTTTTAATCGCTCTTTCAAAAATTCTT 1424 30 100.0 36 .............................. AAGTTTTCAATTACAATTTTTCGGTTGCTCTCAAGT 1490 30 100.0 36 .............................. AAACAATTATCGCAAGTATAAGTTTTCTATATCCTT 1556 30 100.0 36 .............................. TTTTTGATTTTGCATTTTCATTCTCTTTTTTGATTT 1622 30 100.0 36 .............................. TCCTTATCACTTATGTAAGCAAGATAATCACATTTA 1688 30 100.0 36 .............................. ATATAGGCTTTGGGATAAGTTGTTTTTAAATAATTT 1754 30 100.0 37 .............................. CGTTTTTCTTTCCTTATCCAATCCGCTTCATTTTTGA 1821 30 100.0 36 .............................. ATTGTCCAATTTGCAGTAAGAGAGAAAAATTCCATA 1887 30 100.0 36 .............................. AAGTTTCAGCGTCGAAATACCCTGCAAGCGCGATTC 1953 30 100.0 36 .............................. ACCCTCTGGACAAGCGACATTCTGCAGGCATTTTGC 2019 30 100.0 36 .............................. ATTATTTTGTAGAGTATAGGTCTATTAGTTTTTCCT 2085 30 100.0 36 .............................. TTCTTCTTTTGTCTTAGTATAACTGGTTGGATCAGT 2151 30 100.0 36 .............................. AAGGTAGATATAAGCAAGATGTATTTTTTAGTTGCT 2217 30 100.0 27 .............................. ACTTAAATAATTCTCACCATCAAAATA Deletion [2274] 2274 30 100.0 37 .............................. TTATAAAATAAAATTGAATTTTCCCCTGTTTGAATAA 2341 30 100.0 37 .............................. GAAATAAAAAAGATTCCCTTCGTATTCATACACTTTG 2408 30 100.0 37 .............................. TCTCATTTCGCAGGATCACATACAAAGGGTCAAAAAT 2475 30 100.0 36 .............................. GTTCATGAATATCGCGATCGTATCGATTGCGCTTTC 2541 30 100.0 36 .............................. TAGTTCAGAAACGCCATTTCCTCAACCAGCGTGTCA 2607 30 96.7 0 .............................T | TT [2630] ========== ====== ====== ====== ============================== ===================================== ================== 35 30 99.9 36 GTGAGCATCGAACCAGTGTGGAATTTAAAC # Left flank : ATTGGGTGCAAAATTCGGTATTTGAAGGAGAATTAAGCGATGGACAATTTGAGGAAATGAAAGTAAAATTGAGAAAAAATAATAAACTTGAATGAGGATTCGGTTTTAATTTATTCAATGGAGAAAAAATGGGTTGATAGGGAAGTTATAGGTGTGGAAAGAAGTGAGGTAAGTAGAATAATTTAGTCGCGGACAGAGTTTTGGGGCGTTAAATTTAGCGGTTAAATACTTAATATTTGAAAGTTTGAAAAAAATTAATCAGTTTTCTCTTAGTCGCGGACCGTATATTTTTGCATTTTGCTCCGCGACTTAATTTAGGTTGGAAAAATTTGATTTTCTGTGTAAAATTTTGTAGTTTTTGGAGAG # Right flank : TCACTTTATCAGAAGGGAAGTATTTTTATGATCAAGACCAAGCGTGTTTATGAGGCCCCTGAACCTGATGACGGTAAGCGTTTCCTGGTGGAGAGATTATGGCCCAGGGGTGTGAAGAAAGAAACTTTGCAAATTGACGCATGGTTGAAAGGAGTAGCTCCAAGCCACAGCTTGCGACTTTGGTATGGGCATGACCCAAAGAAATGGGAAGAATTTAAACGACGCTACTTTGCTGAGTTAGATGGCAAACCCGAGGCATGGCAACCCATCTTAACAGAGGCCCGCAAAGGAAATGTAACCCTTCTGTATAGTGCACGCGATACGGAACATAATAGTGCGGTAGCATTAAAGATTTACTTGGAGAATAAAAAATGATGGGATAACTTCGAAAAAGTTTTCAGAAACCTGCTATTGACTCTAAGCCCAATTTTCGTTAAATTTAAGATAAACATAGCGGAAAATAGTTAAGAAATTTAAACTAAAATTGAGGTTCCACTATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCATCGAACCAGTGTGGAATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //