Array 1 24366-23407 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAFE01000027.1 Neisseria meningitidis strain Neisseria meningitidis isolate R913, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24365 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 24299 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 24233 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 24167 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 24101 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 24035 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 23969 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC 23903 36 100.0 30 .................................... ACTCCCTGTTTATCGGTTTTTCAGCTTAAA 23837 36 100.0 30 .................................... ACAAAGCCGCAAATCGTCCGCCGCGTATCA 23771 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA 23705 36 97.2 30 ............T....................... CACCCTGATATTCCGCAACTCGATATACTG 23639 36 97.2 30 ............T....................... GTAAAGTCGGCACAAAGTCTTCAGGTTTCA 23573 36 97.2 30 ............T....................... CATCGCGCTGAACATACCGGCGCAGCCGCA 23507 36 97.2 29 ............T....................... CTTCCGGTATGACATCACGAAGCGGGGCG 23442 36 97.2 0 ............T....................... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 98.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGCGGGAATTTAGGGAATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //