Array 1 1301798-1297925 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLZY01000001.1 Phytoactinopolyspora mesophila strain XMNu-373 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1301797 29 96.6 32 ............................A CAAATCCTCCTAGATGAGGGATGCGGCCCCGG 1301736 29 96.6 32 ............................C AGTTCCTGCGCGGCGGTAAGGTTCGCGAGTCC 1301675 29 96.6 32 ............................A TAGAGGGCCATCGCATAGCGTCGACAGTCCCT 1301614 29 93.1 32 A...........................C CAAGCAAGCCCGAACGGTTCTTTGCGAGGAGC 1301553 29 96.6 33 ............................T CCCTCACAACGGTACGCCGTGCGTATTGCTGCC 1301491 29 96.6 32 ............................T TGCATCCCATTGTGGATGCCATCTGCGAAGAG 1301430 29 96.6 32 ............................T TGCAAATGACCACTGGAGTTTATTCGGAGGTA 1301369 29 96.6 32 ............................T CGTTCTGGTGGTCCGCTCAGTTTGTCGGCGAG 1301308 29 100.0 32 ............................. CCCCGCGATTGCCGTGGCTAGTACCGCCCGGG 1301247 29 100.0 32 ............................. GTCACGCCGGTGGGGTCGAAGATGTGGAACTT 1301186 29 100.0 32 ............................. CTGGTGTTCTGCGACCCGCGGGACTGGCAGTC 1301125 29 96.6 32 ............................C TGATGCGGGTCCGTGAGGGCTTCATTCGCATC 1301064 29 96.6 32 ............................T GGGCGCTGGACGCCGACGTCAAGGACGGCATC 1301003 29 96.6 32 ............................T GTCGAAAGCCTTGTGGGCATCGCTGGGGTCGT 1300942 29 96.6 32 ............................T TCTTGAATGCGACCTTGCGCTTCATTGATAAT 1300881 29 96.6 32 ............................C TCTTGCATGCTGACAATGCGAGATTCGATTTC 1300820 29 100.0 32 ............................. TGCCGACCAGCCCCGGCATCCCCATCCCCGAC 1300759 29 100.0 32 ............................. GTGCTCATGGTGTGCCGACCCTATCAGCGTGC 1300698 29 100.0 32 ............................. GTGCTCATGGTGTGCCGACCCTATCAGCGTGC 1300637 29 96.6 32 ............................T CTAGGTAGAGCAGAAACCAGAAACCGGAAGGA 1300576 29 96.6 31 ............................T TCATCTGGGAGCTGCGTCTAGGGTACGGGCC 1300516 29 100.0 32 ............................. GTCCCAGACGGTGGTCAATTCGCGAGTCAAGG 1300455 29 100.0 32 ............................. AGAAGCCGCTGCCGACCCGCGACCAGGGCCAA 1300394 29 96.6 33 ............................T GTTGCGCGCTGTGACCTCCAGGGAGGGTGGAAC 1300332 29 96.6 32 ............................C CAGGATGTGCCCTCTATATCCATATCCGCCTG 1300271 29 96.6 32 ............................C GACACGCGGCCACGGTTCTCCACCAGGGCCGC 1300210 29 96.6 33 ............................C GCGTTCATCGACGACGGTCAACTGGTGCTCCGC 1300148 29 96.6 32 ............................C GTGACGCGGGCCTGGGTGGTGACGGCTCGTGA 1300087 29 96.6 32 ............................C GGAACCGCCTTCATGGTCGAGCAAGTTGGTGA 1300026 29 96.6 32 ............................C CACGCCGCGACCGCGGGTTCCAGGTAGTGGCC 1299965 29 100.0 32 ............................. CAAATGCGAAGCAAAATCGAACCCCGTCCCCG 1299904 29 100.0 32 ............................. CCCACGAACGCCAGCGAGTCGGCGGCGTAGGC 1299843 29 96.6 32 ............................T GTCCATCGCAGTTTTGCGAAACACCTGGCCGA 1299782 29 100.0 32 ............................. GAGAAAAGGGTGAAGTCTAAAGCGTACAGGGA 1299721 29 96.6 32 ............................C AAGTCCCGGTGTCGGTGTAAGTGTTGCTGAAG 1299660 29 96.6 32 ............................C ACCTGCGGGACGAATGACGTGTTACTCAGCGC 1299599 29 96.6 32 ............................C TCGACGGCGTCCGCCCACTCGGCCGGCGACTC 1299538 29 96.6 32 ............................C TCGACGGCGTCCGCCCACTCGGCCGGCGACTC 1299477 29 96.6 32 ............................T GTTTCTGCGGGGTGTGGTCCGCGTTTCTGCCC 1299416 29 96.6 32 ............................T CGATGACTTTCTCTGCCGGGCACGGACCACAC 1299355 29 100.0 32 ............................. GAATTGAACTACGTTGCCGAATTCCTGATCTT 1299294 29 100.0 32 ............................. AAGACGACGACGACCTGTTCGTTGAGGACGAC 1299233 29 100.0 32 ............................. CGTGTGTCCGTGTGGACGAGCTAGAGACAGCC 1299172 29 96.6 32 ............................T GGTCAATCGGCAATCGCGTGGTTATATCGGCA 1299111 29 100.0 32 ............................. TGAGCCCCGCGGCCAGCCGGAATGACTGGTAG 1299050 29 96.6 32 ............................C CGCTGACCGAGGCGGGAACGCGCACTAGACGT 1298989 29 100.0 32 ............................. AAGATCTCTTTGATTACTTGTCACAGGCGTGG 1298928 29 100.0 32 ............................. GATTTCAAAGAGCTTGAGTTCTCAGTCACGCA 1298867 29 100.0 32 ............................. GTTCCGACATACCGGAGCCAGCGTTTAGGTGA 1298806 29 100.0 32 ............................. TGGGCAGTCGAAAACGGTGAATACGAGAAGGA 1298745 29 96.6 31 ............................C ACGACCGGAAGCTCTTCGACCGCGACAATCC 1298685 29 100.0 32 ............................. CCTCTGCCGACTCAAGAGGACATAGACGAGTG 1298624 29 100.0 32 ............................. GTCTCCGCCGTCATCGTCCCGGTCGACTGGAC 1298563 29 96.6 32 ............................C GGCTGGGGAATCATCGCGAAGGCGGTGAATGA 1298502 29 96.6 32 ............................T CGAGCCTCGACACCGGTCTGCTGAGCCTCCAC 1298441 29 96.6 32 ............................C GGTACAGCCGCCGTCGAAATCGGAATCGGTCG 1298380 29 96.6 32 ............................C CAACGAGGAAGAGGAAGCAGAGTACGCGGACG 1298319 29 96.6 33 ............................C GGCAACGCGACCGTCAACAGCAACAGGTTGTCG 1298257 29 96.6 32 ............................A CCTCTTGCCACCACTAACTAGGCATATAGAAA 1298196 29 96.6 32 ............................T GAACGCCAGTACCCAGAGCTAGCGGCGCTCGT 1298135 29 100.0 32 ............................. TCGATGCGCACCGCTAACGGCTCCGAGGGCAT 1298074 29 100.0 32 ............................. TGTTCGGCCAATCGTGCAGCTTTGACTTCGTC 1298013 29 82.8 32 ...........GCAG.....A........ GCGGCGATACACGCGAGTCCACCCGTCGTGGA 1297952 28 72.4 0 ............TCA......-..GG.GA | ========== ====== ====== ====== ============================= ================================= ================== 64 29 97.2 32 GTGCTCCCCGCAGGCGCGGGGATGATCCG # Left flank : GCGTCGTGATCGTCGTCGTCCTGACTGCGGTGCCGCCTGGTCTGCGTGGGCATCTCACACGCTGGTTGCTGGAGATCAGTCCAGGTGTCTTTGTCGGGCACGTGTCGCGGCGCGTACGCGAGCACATGTGGGAACGGATCGTCGAATACGTGTCCGAAGGCCGCGCCCTGATGGTCCATTCCGTGCGCGGCGAGCAACGGCTGGCTTTCGAAGTACATGGGCACGACTGGACTCCGGTCGACTTCGATGGCATTACGCTGATGCGTCGCACCACCGTCCCCGACTACGTGCCAGTCGCAACCGCGCCGATGCGCAAGAGCGATGCGTCGAGCGCCTCCGTTCCCTCCGATGACGTGGTCTGGAAGCGGCGGAACGCCCGGAGAAAGTTTCGCAAGAAAGGGGACAGTGATTTGGATGAGAAGGAATGATTCTCGTTAGAGTCTTGTTTGAAGTGAAATAAAAAAAGGAATGTCGGCTGACGAACCTGCAGGTCAATTAGT # Right flank : TTCCAGCTTCGTGGCCTGGCGTAACGGATGGGGCCGGATTGGGGCTGGGAAACGTTACATGAGGCCACGAAGCTCAGTTGGCGTCGGAGTTAGTGGTCGCCTCAGTGGTGCATTCCCCGCAGGTGGGGGAGAACCAGGAACGCGCGGCCAGGGGATCACGAGTGCGCACGCATCCGAAAGCCGTATCTACCGGCAGGATGCATGCTGTCTGCGAGCGTGAACGCCGGAATCCCTGCATCTCACGGGGTTTTGGTGGCTAGCCGAGAAGGATCAGTCAGATGTCACCACTATGTGCCGTCCGGTTCAGTGCAGGACCTGTTCCAGGGTGTCGGCGCTGAGGATGCGGGCAGTCCAGGTTTCCAGCTGGTCGGCTGTGGCGGCGTGCACGGTGTCCAGCACGGCCGGTGTGGGTGGTCCGAACTTGAGGGTCAACAGCTGTATGAGCGTCTCGGTACGGCCCTGGGCGCGGCCTTCGGCGCGCAGCATCTCAGCGGTGGTCA # Questionable array : NO Score: 5.59 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAGGCGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCAGGCGCGGGGCTGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1313358-1311803 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLZY01000001.1 Phytoactinopolyspora mesophila strain XMNu-373 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1313357 29 100.0 32 ............................. GGCTCGCCGAAGTCGTCGCCGAACTCGCGTTG 1313296 29 96.6 32 ............................C CTGCCGTAGAAGGCGGTGGGGCCGATCTGGGC 1313235 29 100.0 32 ............................. AAGTAGGTCACCATGGCCACCCCCGTGCCCTT 1313174 29 96.6 32 ............................C GGGTGCGCCGCCGGGGACCAGGCCCGAAAAGA 1313113 29 96.6 32 ............................T CATGGACACGCGGAATGGGGGCACGCTCAGGC 1313052 29 96.6 32 ............................C AGCCGTGACAGCCTCACCCGGTGGTTGTGGCG 1312991 29 100.0 32 ............................. CTCGACGACAAGAGCGCCGGTTACCGGTTCGC 1312930 29 96.6 32 ............................T CGCTCGATGTGCGGAATTGCCCGCTGTAGGCC 1312869 29 100.0 32 ............................. GGGGGTTTCAACGCACGCTCGACGCCGTCGAG 1312808 29 100.0 32 ............................. ACGCAGTGGCTTGTCGCTGAGTGGTTCAAGGA 1312747 29 96.6 32 ............................C GGTTCTACGAACAGGAAGCCCTTGCCAGGGAT 1312686 29 96.6 32 ............................C CGGTCAGGCGGCGACGCACGAACGCCCGCGGT 1312625 29 100.0 32 ............................. GTCCCCGAACTCGGGCCGGTCGTGTTCCCCGC 1312564 29 96.6 32 ............................C GGAACCGCCTTCATGGTCGAGCAAGTTGGTGA 1312503 29 96.6 32 ............................T GTCTTCGCTGGTGACGACGGGCTGGTCGGTGA 1312442 29 100.0 32 ............................. GCAAGGACTACGGGGACAATGGAATCTCAGCA 1312381 29 100.0 32 ............................. ATTCCCAGCGACGCCGGGTTCCGCGGACGCCC 1312320 29 96.6 32 ............................C GGAACCGCCTTCATGGTCGAGCAAGTTGGTGA 1312259 29 96.6 32 ............................T ACGACACCGACGCAGATATGCCGGATCGAGCA 1312198 29 100.0 32 ............................. TTCTCCGCCGCGACCTTGATGCGCGGACCGAG 1312137 29 96.6 32 ............................T GCCCTGGTCGGCCTCCGACTGGTTCGGCCGGA 1312076 29 100.0 32 ............................. ATCGTGCAAGAAGGGCCGCGAATTTTCTGGGT 1312015 29 100.0 32 ............................. TTGATCGTGTTGATCCGAACCACGCGGCCGAT 1311954 29 96.6 32 ............................C ACACCGTTGAACAGCACGGTCTTACCCGTCCC 1311893 29 100.0 32 ............................. TCCCCCCTCGGACACCATCTCTACCTGCGGTA 1311832 29 89.7 0 ........................G..GA | G [1311810] ========== ====== ====== ====== ============================= ================================ ================== 26 29 97.9 32 GTGCTCCCCGCGGACGCGGGGATGATCCG # Left flank : GCGGACGTGGAGTTCGGTGAAGCGGAGAGAATCGCGGACAACGCCGCGGTGATCACCCGAGTGCCCGCGGAGATCGTCTACCGCACGACATTGCGCCGCCGCCGCACCACGCAGGTGAGTCTGACCTCGATGTTGCTGCTCATGGCCATACCGTCGGCGACGCCGGCGCTGCTGGAGACGGCGCGGTCGAAGGAGATCGTGATCACCGACGTCCCGCCGACCGACGCCGATCTCGCCAAGTCCGCCCAGCGGGCCCAAGCGCTTGTGAATCGACTTGCCTTGCGCCGGCGCAAGGACGAATGAATGCAGCTTCGTGGCCTGGCGTAACGGATAGGGCTGGATTCGAGGCCGTAAACGTTACTTGAGGCCACGAGGCTGAGTTGCGTCAGATCGGGTGGATTCTCTCTTCGGGCCGGCAGCGAAGGTCATTCGGGGCCGACTGCTTGATGTAAGTGATGAGAAACGGGCCTGGAGCCGGGTATCCTAGCTGGTCAGTAAGT # Right flank : ATCCAGCTTCGTGGCCTGGCGTAACGGATGGGGCCGGATTCGTACCGGGAAACGTTACGGGAGGCCACGAAGCTCAGCGGAGCGAGGTTGTGGGGTGATACTGGTCCGGCGGTTTCCGCCGGACCAGCAAAAGGGGCCGGGTGGGTCGCTTTGCGATCCGTACGGCCACCAGCGAGTACTCGCCACGACAAGACTCGGCAGCGAAAGCAACGGAGGCACCGTGATTTCGTGCCGTGTCGCTGACCAGCGCTTCTGCGGAGTTCGGCAAGAATGTAGAAGCCAGTCCTTTGCGGTGGATGTGGAAGTGAGCCCGGGAAGTTCCCGCTCGAAGTGGGGTCCCGGGTTTCGCGCGTCTCTGAGCCCCGCGCTGCCCAACTCTGGTCTAGAGGACGAGTTCGATGATCTTGTCGTCCAGGATCTTCCGGTAAGGCGGCTTTCCTGTGTATCGCACCATTACCACACCGGCGACGACAGATGAGGCGGCGAGCGGACGCAAACGC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGGACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //