Array 1 34733-36696 **** Predicted by CRISPRDetect 2.4 *** >NZ_PISF01000030.1 Actinomyces howellii strain Sh 7/4276 Scaffold30_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================================================================================== ================== 34733 36 100.0 35 .................................... CCTTGAGACGGCTTGTTCTGGTACTTCTCGATCTG 34804 36 100.0 36 .................................... ACCAAGTCCTCTAAGTGCTCCGCGATCGCCGCCGGG 34876 36 100.0 35 .................................... TTCGCGGGCGAACCAGAACACGGAGTCACCCTTGG 34947 36 100.0 33 .................................... CCGCTCCCGCTGACGTACGCCCCCGCGTCATCT 35016 36 100.0 35 .................................... ACGGACCGGTCTGTATGGGGCGCACCTACGATGGT 35087 36 100.0 35 .................................... GGCCGCGGGGCAGGCAGGTACCTCCCGCCCGAGCA 35158 36 100.0 34 .................................... AGGTCCACGGTCAAGCCGGCGTTCATGCGATCTG 35228 36 100.0 35 .................................... GAGCTCTATGTCCGCGAGGCCTTCAGTGTCTCGCT 35299 36 100.0 107 .................................... ACAGCCTGCTGACTGTTGAATGGCCTGAGCCACGGCGACTGCCAGCGCGCCGATGTTGCGCTTCATTGAGGCACAGCCTGCTGACTGTTGAGGAAGTCGAGATCCAC 35442 36 100.0 36 .................................... CGGCCCACCTCTCACGGCCCCTCGTGGGCCGTACAG 35514 36 100.0 34 .................................... AAGCCGCACGCCGGGACTAGGCGAGCGTCGCCCA 35584 36 100.0 35 .................................... CTGTTCCTCGAGCTGCCCGAGGTGTCGGAGGCCCA 35655 36 100.0 34 .................................... GAAGCCATGATCTGCTCCTCGTAGGCTCTCAGGC 35725 36 100.0 36 .................................... TCCGCGCACGACGCGTCCGGGACGTGGGACCGCCGC 35797 36 100.0 35 .................................... ATCGGCCAGTCCACGTTCTCGGTCAAGCCGTCGTC 35868 36 100.0 38 .................................... GGAGTCACGGTCAAGCCGGCGTTCATGCGATCCGCGGC 35942 36 100.0 38 .................................... GCGACCGCTAACGCCACGTACGCCACCATCGCCAACCT 36016 36 100.0 37 .................................... GACCATCGTGTCGGCAGCGTCCTGAGCGGCCACCACA 36089 36 100.0 36 .................................... TACACGGTGTACGCCTATGTGGTGGACGTCCTCGCG 36161 36 100.0 37 .................................... AGCGCCTCACTGTCGCACAGGGCGCACAGGTCCGCCG 36234 36 100.0 34 .................................... GCTGCCTGCACCAGGCCAGAGCAGTCCCACGCAT 36304 36 100.0 34 .................................... GACTACACGCCCCGGATCTGCGTCGCGTGGCTCG 36374 36 100.0 33 .................................... ACCTCGCACTCCGCATAAAGGGCGCCGTCACCC 36443 36 100.0 39 .................................... TCAACGACACCCTGATGGGACTGTCCGTCCGCTCCCCAG 36518 36 97.2 34 ........T........................... GACGCCGCCCGCATCGTGTCGCCGTCTGCGCCGG 36588 36 100.0 37 .................................... ATGGCTCCTCCCTCGGCAACCGGAGTGATGTGGTCGG 36661 36 91.7 0 .......................A..........CT | ========== ====== ====== ====== ==================================== =========================================================================================================== ================== 27 36 99.6 38 GTTGCAGCCCCTTCGGGGGTTGCGCTTCATTGAGGC # Left flank : ATCGGGGAGTCACGGTGCGCTGATGCGTGACGATGTGAGACGTGTTCTGGTGGCATATGACGTACCGTCTGATCGACGTCGAGCCAGAGTCGCGAAGTGCTTGTTGAAGTACGGGGATCGAATCCAGTACTCAGTCTTCGTCGTCGATGCCTCACCTGCTAAGCTTCTCCGCTTGCGAGGTGAGCTCGATGGTCTTGTCGACCCCGAGGAAGACTCCATCCTGCTGTGTGACGTGGGTCTGCTCTCATCGGTCGACGCGGCGCGGTTCTCCTACGTGGGACTGACCCGGACGATCACGCCGGACGGTCCCCTCATCGCCTGACGCGAGCGCTCGAGTGCTACGCGGATCCCCGGGGAGCGCTCGCCGCCAGGAGATCGTTGCAACGGCGCTGTTGTCGGGTTGAGATGCGCACGGCGGACCGGCGCCGTCACCCGCCGAGGACCGAGCGCTCGCGTGGCCCCTCGACATCCGCGCGATGCGGCGGGGTATGATGTGGTCG # Right flank : TTTCTCACCGGGGTTGTTTGTTGAGGCTGATGATGACGAGGGCTGTGGCGGTGATGTGGGTGATGGTGTGCGGGTCGAGGGTGACGTGTTGGAGGGCCTTGAAGTGCTTGAGCATGGCATTGGCCCT # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCCCTTCGGGGGTTGCGCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.60,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 2799-2191 **** Predicted by CRISPRDetect 2.4 *** >NZ_PISF01000051.1 Actinomyces howellii strain Sh 7/4276 Scaffold51_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 2798 36 100.0 33 .................................... ACGCCGTCAGACTGGAGCTTGTCGATCTCCGCC 2729 36 100.0 36 .................................... CGTCCGATGAGCCACATCGCTGCGGTCAGGACGACG 2657 36 100.0 35 .................................... CGGGAGGGTTACCTGGAGGCGACGACGAAGGACGT 2586 36 100.0 35 .................................... AGCCGCACGCTGTGCCGCGGCGCCCGGGTGGACGA 2515 36 97.2 37 .......................A............ GACGGCGAGGAGCAGGCACGCAACATCCAGATTGCGA 2442 36 97.2 34 .......................A............ GCTCACCACTCATCTTGGTCGGGTCGAATGAGAT 2372 36 97.2 36 .......................A............ ATCATGAACCGGCGGCCCAGGTCGCCGCCGCGGAGG 2300 36 97.2 38 .......................A............ TCATAGGCCGCCTCGACAACGACCTCCTCCTGGCCGCA 2226 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== ====================================== ================== 9 36 98.4 36 GTTGCAGCCCCTTCGGGGGTTGCGCTTCATTGAGGC # Left flank : GGGTGCTTCTTTGGTCAGAACCCATCCTGGATGCGCTCCCCGCGTGCACCCCCACACGACACGCACCCTCCCCCAGCATCCCAACGATCAGGCCGGGTGCACGCCCCACCCCGGTGAGAAAACCTCATTGAGGCACCGGCAACTTCCGCGAGGCCCTCGAAAAGGGGG # Right flank : AGGTTGCGCTGCGCGTAGTCCTTGTGTTGGTTGAACAGTTCCAGCCCCTCGTCATGCTGGCGCTTTCATGGGGCTGGGTGGGTGTGAAGGCACCATGGTGCCTTCACACCCACCCCCGATTCCGTGCCTCGGTGGGAGAAGCGCGGGTGAGCAACTGGGGATGGCGTCATACCACTGTGTGGCATGCACCAGACCAGCGCGACCGTGCGCCCAGGGGAGGGGGGCGACCTGGCCTCAGATGCCGAACCGACGCTCGGCCTCACCGATCTCCACCTAGGTCAACGAGCCGCTCAGGGATGAAAACCGTCGTGCCCTTGTCGTCGGTGAGGGTGACGTCCTGGGGCGACGCGTCCGTCGAGATCCTCCGGCGGTGTGATCAGCGCCGGCCGGATGAGCCGAGTGCGGGTACCACGGGCACGTGCCTCTGGTGATCATCCGACCCGTGGCCGGGTCGCACCCAGATCGCGGCGATCTTCATCGGGTGCACACTCAAAAATCTG # Questionable array : NO Score: 2.99 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCCCCTTCGGGGGTTGCGCTTCATTGAGGC # Alternate repeat : GTTGCAGCCCCTTCGGGGGTTGCACTTCATTGAGGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //