Array 1 183103-179114 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWMG01000002.1 Klebsiella pneumoniae strain VRCO0411, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 183102 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 183043 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 182982 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 182921 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 182860 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 182799 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 182738 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 182677 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 182616 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 182555 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 182494 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 182433 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 182372 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 182311 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 182250 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 182189 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 182128 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 182067 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 182006 29 100.0 32 ............................. GACCTGTCATGACGGAAATAGCGGTTATAAAC 181945 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 181884 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 181823 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 181762 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 181701 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 181640 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 181579 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 181518 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 181457 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 181396 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 181335 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 181274 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 181213 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 181152 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 181091 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 181030 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 180969 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 180908 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 180847 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 180786 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 180725 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 180664 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 180603 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 180542 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 180481 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 180420 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 180359 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 180298 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 180237 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 180176 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 180115 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 180054 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 179993 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 179932 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 179871 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 179810 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 179749 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 179688 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 179627 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 179566 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 179505 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 179444 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 179383 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 179322 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 179261 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 179200 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 179142 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 66 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //