Array 1 152020-151692 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAD010000019.1 Pectobacterium brasiliense strain NAK:432 NBGOLILE_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 152019 28 100.0 32 ............................ TGAATATGTCATTCAACATCTGCCGCAAATCC 151959 28 100.0 32 ............................ TGAACGCCAGTGCCGTATTTTAAGTCCGTAAC 151899 28 100.0 32 ............................ GCATTGGCCATGCACCAGAAGCTGTTACGGAA 151839 28 96.4 32 ...........C................ ATCAGATAATTTCCTCATCAAACAGCAGTTCA 151779 28 92.9 32 ...........C.C.............. ATCGAGGACGAGCTTTGCGCGTCCATTGGATA 151719 28 92.9 0 .......A.........T.......... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCTCTATCCACGCTGGAGCAAGCGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTACGCCGCGTTCAGTTCAAGAGCAGCGCTGAACGATTGCGCCGACGCTCGGTGAACAAAGGCTGGCTAACGGAAGCAGAAGCCGCAGCACGCATTCCCGATACGGTGGAAAAACGCAGCACCCTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGGCAAATGTTCTTCGTGTTTGTGGAACATGGCCCGTTACAGGATGCACCTATCGCAGGACGCTTTTCCTCCTACGGCTTAAGCGCAGAAGCCACCGTACCCTGGTTCTGACCCTTTTTTGGCGACCAGCTGCAAGTCATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGGGTTTTCGAGATAAAATGAACATTCTCTTTAACAATCTGGTGGTTAGATTAAAAACCTAACC # Right flank : ATGACTGATTTATTGAGCAAAGAAAGGATGGAGTTCACTGCCGTGCAGGCAGTTCGGCGATTATCGGGATGCGTCGCTGCCGCGACGCATTATTGAGAGCTATTCCCCGTTGAGGGTAACCACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTTAGACTGTTTCCGAGCAGGCTACCTTTTAGGTGCGCCGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGCTCATCCTCAGGCACTAAACGATTAAAAAAACTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATAAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 160651-162524 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAD010000019.1 Pectobacterium brasiliense strain NAK:432 NBGOLILE_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 160651 28 100.0 32 ............................ GATCCGCGTCAGCGGGGCGGGGCGCTGTACTG 160711 28 100.0 32 ............................ AAGCCAAATTATTTAATGATTGAATGATATTA 160771 28 100.0 32 ............................ TGTAACCAGCCTCGGATTTCTTTTCTGGCTTC 160831 28 100.0 32 ............................ GGCATCAACGGTTAACCCATACAACGACAACT 160891 28 100.0 32 ............................ GCGAAGAAGTCCGGTGAGATTAAAGCGGGTGT 160951 28 100.0 32 ............................ TTCTTCAGACGTACCGTCAGAGGTTGACCAGG 161011 28 100.0 32 ............................ TTTTTGTACCATAACGCTCTGTGTCGCTGTGA 161071 28 100.0 32 ............................ GTTACCAGGAACAACCCGTTAATTTTTGGATT 161131 28 100.0 32 ............................ AGATAGAAAAATTGCTAACGGTCTTTCTTGTG 161191 28 100.0 32 ............................ CCCAAAATAACCCGTTCGCACCTTTCTTCTTG 161251 28 100.0 32 ............................ CTGAAGGACGGCCATACGACGCGGGGCGATGC 161311 28 100.0 32 ............................ TTGTAGCTGTTCCACGCATCGCGGCATTTTTC 161371 28 100.0 32 ............................ TCAACGAGTATAGCGCCGTAGTTCGTATAAGA 161431 28 100.0 33 ............................ GAAATGCAGAAGCAGCAGGCGCAGCAGAAGCAA 161492 28 100.0 32 ............................ TTTCATCGTCCGTGCCTCCGATACCTGCGAAG 161552 28 100.0 32 ............................ TGACAGCACTCGTCAGTGAGATGTGCTTTAAC 161612 28 100.0 32 ............................ CGCATCGAGAACGAAACCACGGAACGGGAGAG 161672 28 100.0 32 ............................ TGAGATGAAACTAATTCCTAGGCCGTTCGTGT 161732 28 100.0 32 ............................ GTCGAAGCATACGCCCTAAAAAAAGCAACTGA 161792 28 100.0 32 ............................ GCCCAATCCGAACGATCCCTCACCGCTATTTG 161852 28 100.0 32 ............................ ATCGGCTGGTTTTGGTTTGATGGATCGCGGTC 161912 28 100.0 32 ............................ GGGGAATTCATCTTCCAGCTTCATTGTTGCTG 161972 28 96.4 32 ...........G................ TGTTACCGCTCAGCGCAATAATCAGCGTTATA 162032 28 100.0 32 ............................ TAAATATGTGGGTTTCTGCTGCGTCAACGTTT 162092 28 100.0 32 ............................ CTCACGCGTACCCGAAGAAAGAAGTAGGCTGG 162152 28 96.4 33 ...........C................ ACGTTTTGAACGGCTCCTCTTTGTTTGCGATGA 162213 28 96.4 11 .............C.............. CTCGACCTGCG Deletion [162252] 162252 28 78.6 32 CGG.....G.A.G............... TGATGAGGATCGGCTCGCTAAAATCGGATATG CATCA [162264] 162317 28 96.4 32 ...............A............ AAGCCAAGAGCAACAACTCGCCAATGATCCAC 162377 28 100.0 32 ............................ GTGGCAGCAAAATTACCAGCCACAGGCTACGC 162437 28 96.4 32 ...........G................ ATTTCGATCCCCGTTGAAGCGCCGCCGCCACC 162497 28 78.6 0 .............C......T...TCCC | ========== ====== ====== ====== ============================ ================================= ================== 32 28 98.1 31 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGACTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAACCAATTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAATAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : CCTGTCTTAAGCGCCATTATCTGGCTATTATCGAGGTAACACTATCGTCAGTATTTGATGCGTTATCGTCGTTAAATAACGTGTTTTTGATTCCCCTTTCTCGTAAAATTTTTAAGTAACGGGTTTCTTTGTGTGGAATGGAAAATTGCGGATTGGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAGCCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATATGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGAGTCGTGGAAAACGGCCATTTTTGCCTGTACCGATCCTG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 169382-168454 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAD010000019.1 Pectobacterium brasiliense strain NAK:432 NBGOLILE_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 169381 28 100.0 32 ............................ AGAATTCATACGCATTTCCGGTTACGCCATCC 169321 28 100.0 32 ............................ GGAAACCCAAAGCCATCACTACGCTGGTGGCC 169261 28 100.0 32 ............................ TTACTTCCCTGAGGTGGAACTAACAGCATTTT 169201 28 100.0 32 ............................ CAGCACGGCTTTACTGGTCTGTGCATCGCACC 169141 28 100.0 32 ............................ TAAAACCATCACAAAACTATCACAACAGCATC 169081 28 100.0 32 ............................ CCGCGCGGGGCGTCATGCAGAAAGAAAATCCG 169021 28 100.0 32 ............................ GCCGCCGTGCTGCTGCTGGGCGTAGCTCTACG 168961 28 100.0 32 ............................ TGTGCCGCTTCCTGCGCCGCTTGCGCGGCTTC 168901 28 100.0 32 ............................ AATGCGCAGTTGGAAGCGCAAAAGACACAGGC 168841 28 100.0 32 ............................ TGATTACTCCGGCGCGGTTGGCGATGGGCGGA 168781 28 100.0 32 ............................ AACAAACCGATTAGTGAAGTGATTGCTGATTT 168721 28 100.0 32 ............................ AGCCCCGCCGATAGACCCCGTCACATACGGAA 168661 28 100.0 32 ............................ GGCAATGGATGCCGTGCTGGCCTCCGCTGATG 168601 28 100.0 32 ............................ CATGCCCGAAACGCCTCAAACGACTTAACCGC 168541 28 85.7 32 .....T.....T.C...T.......... GAAATCGTCGCCGATATCTTCAGCACCGGAAT 168481 28 82.1 0 ..C........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ACATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATACAGAAATTCAGCCAGCAACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGATTGTATATCCATAGCATATGCAGATACCTGGCATAGGCCTGTCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAAGGGTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : ATAAAGCTCTCCTAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAGCTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGCCGCATCGCGCTAGAACAGGCACAGCTGATTCTTGGCTATCATGCCCGTCTGTCGCCGAACGCCGTCGGACTGGAATGTCTGGGATTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGTCAGATTCTGTCGCAGAACAAGAGTGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //