Array 1 156663-153519 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYZO01000015.1 Salmonella enterica subsp. houtenae serovar 50:z4,z23:- strain 81-2335 NODE_15_length_158981_cov_3.95052, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 156662 29 96.6 32 .....T....................... AAACCCTTTATTGATTAAATCATTCATAGGCA 156601 29 100.0 32 ............................. TATATTACCAATGTCGAACAAACAGCAATTAA 156540 29 100.0 32 ............................. CAAATCGGACAATCTAAATTAGCGACATATCG 156479 29 100.0 33 ............................. CCCAAAAATTGGAAACGCTTAATACAAGTTTGC 156417 29 100.0 32 ............................. AGCGATAAAAATCTACCAATTAGCGCCTCAGC 156356 29 100.0 32 ............................. AATTAATATAATGAATAATAATAGTAATAATT 156295 29 100.0 32 ............................. ACAACGCCGTAATTGTTAACGTTGCAAATCTT 156234 29 100.0 32 ............................. GGGTGGCTCGAAGAATTTTATGGGAGGCTTGG 156173 29 100.0 32 ............................. ATTTCAGAGTTGTGCATGTTGATTAGTTTTAA 156112 29 100.0 32 ............................. TAATAACCTATTGATATGACAAGCCGGGCGGC 156051 29 100.0 32 ............................. GTAATATCATTAATAAAGATGGTGATACCATT 155990 29 100.0 32 ............................. GCTATCATATGCACCGAACAGACCTGCTTCAT 155929 29 100.0 32 ............................. AATGATAGTGCCTATGCAACTGTAGGCATGAT 155868 29 100.0 32 ............................. TTTCATGCTCTTTAAAAATTAGCCGTAAATGT 155807 29 100.0 32 ............................. GTCATCCAATCCAATCATTTTTATATTATTCG 155746 29 100.0 33 ............................. AATTATCAAACGGTTCAATAACCCAGACGCCGC 155684 29 100.0 32 ............................. AATGCGCTGATTTCGATTGGTCTAGCGCGATC 155623 29 100.0 32 ............................. AATTTGGATACTCAATGTTTCACCCAATTCAT 155562 29 100.0 32 ............................. CGCTGGAAATGAATGCAGCATTTGAACATGAT 155501 29 100.0 32 ............................. TCGTCAGGTGATATTCGAATGTTTAAATTCGT 155440 29 100.0 32 ............................. CACGCCGATTCTATTACTTTTTTGGTGATGTC 155379 29 100.0 32 ............................. ATACATTGCGCGATGAACTGTGTGAACTGCGC 155318 29 100.0 32 ............................. GCCAACTAAACGGAACATTTTCCCGCCATTTG 155257 29 100.0 32 ............................. TGCTGGGACTGGTTACGGTCCTACTATGATTC 155196 29 100.0 32 ............................. GTCCACTCTTAGATAACGGTAGATATATCGAC 155135 29 100.0 32 ............................. AAATAGCGCGTTTAGTGTGAGCGTATGCCGCA 155074 29 100.0 33 ............................. GGCGCGTACAATGTGTAATTGAGGGGGGGGGGA 155012 29 100.0 32 ............................. CTATTCACGGCAACAAAAGCAAGTGATTTACT 154951 29 100.0 32 ............................. TGGAATCTAAATTGTTAAACATTGCCCGCTAA 154890 29 100.0 32 ............................. ACTTTCAAAATATTTTATACTAATTTCATGGT 154829 29 100.0 32 ............................. ATCTGTAATGCAACCAGTGATGGTACGAATGT 154768 29 100.0 32 ............................. CAATTTCTCGTTTGCTTGCACCCTGTTGGTAC 154707 29 100.0 33 ............................. AGCCTGCAACGGTGTTTTGTTGCTATGGCTGAC 154645 29 100.0 32 ............................. CAGAATAATTAACAGAATAATAATTTAATAAT 154584 29 100.0 32 ............................. CTATATAAAATAGCGTTTCAGTTTATTAAAAC 154523 29 100.0 32 ............................. GTTCCGGTGATTGGGAAGAAAATAGAAGATTT 154462 29 100.0 32 ............................. CCCACGGGCACGAATTGGCGCTAATCTGTAAC 154401 29 100.0 32 ............................. GGGTTGGGCCAATGCAACCGATGACCGCCTGT 154340 29 100.0 32 ............................. AACGCCGAAAGGCCACGCGTGCTGGCGGTCGC 154279 29 100.0 32 ............................. CAAAATTGTTTGCGGCTGAATTGCAACAGCGC 154218 29 100.0 32 ............................. GGGCCCTCGGTTTCCGCGAGACCTGCAAGTTG 154157 29 93.1 32 .............T..............C AGGTGAAAGATGCGCGCGTGTCGCTGATGTAC 154096 29 100.0 32 ............................. TGGTTGATGTTGCGTCATCTCCGTATACCGCC 154035 29 100.0 32 ............................. AGCAACCGCTTCGTCTTTGCCCGACTCGTCTT 153974 29 100.0 32 ............................. GAATCTGACTAATGAAACTCAACGAAATCAAA 153913 29 100.0 32 ............................. TAACGAATCTTATTAATATAGGTATGATGGGA 153852 29 100.0 32 ............................. GGGTCGCATCCTCTCCGACAGACAGCAGAATG 153791 29 100.0 32 ............................. ACGAATTATTTTCCGTGTTAATGGACCAGCGT 153730 29 100.0 32 ............................. AGACAGAAAAGACCCAAGAAAAAAACATGGAA 153669 29 100.0 32 ............................. GATTTGTCCGGTATGGTTATTGTCTGCGGATA 153608 29 93.1 32 ................T...........A GAATGGCGCTAGTTCGTCATATCAATGTGAAT 153547 29 89.7 0 ............T..............GT | ========== ====== ====== ====== ============================= ================================= ================== 52 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGCTTCAGTTTTGCCCGCGCCGGTAACGTCTTCCAGAATAACCAACTGCGGGCCTGGGGCTGAGATATCCAGCGTGCTCGCCCGTTCCTGAAGCGGAGTGAGCGTACGGATAAATGGAAACAGCGCCTGATGGCCCTGATAATGACGATGCTGCGATAATGGCGGGATTTTTCCAATGGCCTGCCGTGCTTTTTCGCAGGCGAGGAGCCAATAATCTTGTAGAGGCATCGGCTCACTAAGCGGGGGAAACTGGGTTTCATCCGAGCCTATCCAGTCGGCCAGGGTTGTCAGACCAGCAAAAAACCAGCTCTGCTGCTTTAGACATTTTCTGCCCGTTTTAACGCGCCACTCCTGCGGTAGCGTAAAGGGGAATAACCGGCTTAACGCTTCCAGGTAGTGCGTGGCGGCAACGATATCTTCATCGGCGAATGCCAGGGCGCTACTATTTTTCAGCGTATCGGGAGGAATACCATGATGCCCGGTACTTATGAGCATCCAG # Right flank : TTTTCACCAGCAGGTCAGGACGTTTTTTCTGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCCAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCATGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATATCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAAGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //