Array 1 7211-9557 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBY01000097.1 Salmonella enterica subsp. enterica serovar Albany strain 95-0155 NODE_97_length_9565_cov_4.03777, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7211 29 100.0 32 ............................. CGAACACTGGCTTAAGTGCCATTGCTGGAAGT 7272 29 100.0 32 ............................. CGTCATCATACCAACTGCTGGTCGATACGATT 7333 29 100.0 32 ............................. ATAACAGCGGCCACAATATAAACAATGGTTAA 7394 29 100.0 32 ............................. CATTCTGACTAACGCCACCACAATTGCCGCTA 7455 29 100.0 32 ............................. ATGTCAGCGCAGGAGATGGCGGCGACTGCTGG 7516 29 100.0 32 ............................. CGCCGCCCCCATCACAGCACCCCGGCCAGCTT 7577 29 100.0 32 ............................. GTCTTGAGCAGTGGGCGCAAGAGTCTGGTTAT 7638 29 100.0 32 ............................. GAATCGCGGGAATTAATATTAAATCTGGCGTC 7699 29 100.0 32 ............................. ATAATCAGGTCGTTAATATTTTTGGTCGCCGC 7760 29 100.0 32 ............................. CCCACGCGGCACAGCTGGCAGAGGACGAAATG 7821 29 100.0 32 ............................. CGCTGGTGTACGACATCGCCGACATGATCAAA 7882 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 7943 29 100.0 32 ............................. TTGCGTCAGGTCGTCGTTTTTTGAGAACGCCA 8004 29 100.0 32 ............................. CTAAATAAAACCTGTAATTGCTCCCAATCGTA 8065 29 100.0 32 ............................. AGGGGCAGCTCCTGGTCGATGAGGTTCTTGAG 8126 29 100.0 32 ............................. CCGTCGGCCTGACAGCCACAGCAGTCAATACA 8187 29 96.6 32 ............................A TGCTGGTCACGCCCGGTTTAGCGGGTAAATTC 8248 29 100.0 32 ............................. TCACGGGGTCCGACGCGGATGTAATGAGTTAT 8309 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 8370 29 100.0 32 ............................. TTACTGGAACTGTCACTATACGTGGAACGTCG 8431 29 100.0 32 ............................. ACAACCGTCGTTTTCTCCACGACGTCGAGAAG 8492 29 100.0 32 ............................. CGGGCATTTGCCCGCTTTTCATTACAGTGATT 8553 29 100.0 32 ............................. TTCTGGCAATGGTCTTATTTTTTGAGGTTTAG 8614 29 100.0 32 ............................. GTCACGTGCGGTTATCCTGCAATTTCTGACGA 8675 29 100.0 32 ............................. GTTTACAGCCTGAGCAATGCCGGAATGAATGA 8736 29 100.0 32 ............................. ACGCGAGCGCCGGTAGTCAGCACATCATTAAA 8797 29 100.0 32 ............................. CATAACCATAACCAAATTGGGTTAATGGCGCC 8858 29 100.0 32 ............................. CCAGCCTCTTCAACGAGTTCGAGAAACGCGGT 8919 29 100.0 32 ............................. TCTGGTCGTCCGAGGCTGAGGCCGAGTGGCTG 8980 29 100.0 32 ............................. CGCACCTGCCGGGACATGACCCTGCCGGAGCT 9041 29 100.0 32 ............................. GCGTTTAAACGCTTTTTTGATATCGGCTTCAG 9102 29 100.0 32 ............................. TTAGAGTTGAAATTGATGGCATTGAACTTGGC 9163 29 100.0 32 ............................. TACCAAAGATACCGCCGCGCTGCTTTCTGGTA 9224 29 100.0 32 ............................. GCATTGCCTGGCTGAGTCCGTCGCTAACTGCG 9285 29 100.0 32 ............................. TAGCTTCTTTGTTCGTGCGGGGCGGATTATGC 9346 29 100.0 32 ............................. CATAATTTACGCGGCCCTTTTTTGGTCACCCA 9407 29 100.0 32 ............................. CGAATAAACAGGCCTGTAACGCGCTCCAGCGT 9468 29 100.0 32 ............................. GCTCCGCCTTGAAAATAACATCTGACATTGTG 9529 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 39 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GATCGGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1362-110 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBY01000896.1 Salmonella enterica subsp. enterica serovar Albany strain 95-0155 NODE_896_length_1373_cov_3.22679, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1361 29 100.0 32 ............................. TGCCGGGGTTCTGCAGTCTCTATTTTCCTCGC 1300 29 100.0 32 ............................. GAGCTGATAGAGGCCAACCCGGACGCAAAAAT 1239 29 100.0 32 ............................. AGCTGTTCGGCGTGGCGGCGTAGCGCCTCGGG 1178 29 100.0 32 ............................. CTGCTGATGTAATGGCCGACGCAGATGCTGTG 1117 29 100.0 32 ............................. AAAGTTGACACAATAGCGAAATCAATTACTGA 1056 29 100.0 33 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCCC 994 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 933 29 100.0 32 ............................. TGATCCAGCCACTTAAACAAAATGATCCACAT 872 29 100.0 32 ............................. GGCCACACCGACAACCGCAACGGATACAAACA 811 29 100.0 32 ............................. CAGCCGGAACGACAGCAGCGACAGCGACGTGG 750 29 100.0 32 ............................. ATATTATAAAAAAAATAATAACCTCTCAGAAA 689 29 100.0 32 ............................. GTTTGGTTCATCCTGAACGGCGTTCGTGGGGA 628 29 100.0 32 ............................. CGCCCGCATGATGGCGCGGTTACTTAATGTCA 567 29 100.0 33 ............................. CGGTATGCTATTGACAGGAGTGAGATTTTAGAT 505 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 444 29 96.6 32 ............T................ TTGATTACAGTAAAATTTACGTTTATTCAGTC 383 29 100.0 32 ............................. AAATCTCCACCGTGGATATTTCGGTTATTGGT 322 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 261 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 200 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 139 29 100.0 0 ............................. | A [112] ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATCTACATTGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGATC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 433-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBY01001255.1 Salmonella enterica subsp. enterica serovar Albany strain 95-0155 NODE_1255_length_488_cov_2.17249, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 432 29 96.6 32 ............T................ AGCACGCCACAGCGCGTAACTGTCGCAATAGA 371 29 100.0 32 ............................. CGTCTTATCAGGATACCTGCAAACAGATGTTG 310 29 100.0 32 ............................. ACCCCCCATTTACTGTTATTGTAGGGATAGCC 249 29 100.0 32 ............................. CGAGCGCGGAATGATTTTTAACGCTGAGATGG 188 29 100.0 32 ............................. GCTGGAATGGTACGGCTTACCAACTTCCCTGA 127 29 100.0 32 ............................. TGTTTGCCATTCTCTCGCGTGCTGAGGGAGAC 66 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCCGCGCCAGCGGGGATAAACCGGCTGGAGCGCAACTGCCAGTGACTACAGAAG # Right flank : GATTTGCGTCAGACTACCGACAAGATCGGAAGAGCACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27-360 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBY01001310.1 Salmonella enterica subsp. enterica serovar Albany strain 95-0155 NODE_1310_length_383_cov_3.10494, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 27 29 100.0 32 ............................. ATCTCCGGCACGTGCGATAACGGGTCTGATTA 88 29 100.0 32 ............................. CGACCCAGCGTTACGCGGTAATATTTCGCACC 149 29 100.0 32 ............................. GACGTTGATTTACACGGCAAAGATACGGAATC 210 29 100.0 32 ............................. GTACTGGCCTATTCCACATACAGTGGCACGCG 271 29 100.0 32 ............................. TAGCTTAATCACGGTGCGTCCCTCCTCCGTTC 332 29 96.6 0 ...C......................... | ========== ====== ====== ====== ============================= ================================ ================== 6 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCGTTTTCTCCACGACGTCGAGAAGG # Right flank : ACCTGATTGAGGTAATCATGAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 273-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZBY01000042.1 Salmonella enterica subsp. enterica serovar Albany strain 95-0155 NODE_42_length_14612_cov_4.53164, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 272 29 100.0 32 ............................. GATATGGGGCTTGATCTTGATTTATTTAATAC 211 29 100.0 32 ............................. ACAAAAAAGACGAAACCAAAATCGACGCCGCG 150 29 100.0 32 ............................. CCGTCATGGCGGATATTCGTCTGATTGGCGAC 89 29 100.0 32 ............................. GGGATTGCGGGAATTAGTATTAAATCCGGCGT 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : C # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //