Array 1 210003-209135 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031552.1 Pasteurella multocida strain TB168 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 210002 28 100.0 32 ............................ ATTAGCTGAAGACCGATTTATTAGAAATACAG 209942 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 209882 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 209822 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 209762 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 209702 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 209642 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 209582 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 209522 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 209462 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 209402 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 209342 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 209282 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 209222 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 209162 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 99.5 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATACTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 767170-765823 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP031552.1 Pasteurella multocida strain TB168 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 767169 28 100.0 32 ............................ TTACCTTCCGTCATTGTTGAGCCTCCGCTAGT 767109 28 100.0 32 ............................ GCTACAAGCAAGCGACGATAGTTTTAATTTTA 767049 28 100.0 32 ............................ AAAGCCTATGAACACACAACCCTTGCACAAGT 766989 28 100.0 32 ............................ TTATCGCGGAAGTCAGTCGCCATAATGGCGTA 766929 28 100.0 32 ............................ ATTTCAGGTGAGCAGTGGATGATTATCCCGAG 766869 28 100.0 32 ............................ ATGTGTCTAAATCGGGGTAGATTTCCGCGAGC 766809 28 100.0 32 ............................ AAAATCTCTGGAATTTGTCGCATATTGCCTTT 766749 28 100.0 32 ............................ GTTGCAAGGTTGTAAGCTGTCCCCGCGTATTC 766689 28 100.0 32 ............................ ATGAACACATGATCACTTCTTGATGGATCAAA 766629 28 100.0 32 ............................ ATCAACGGGAGCGTAAGCGAAATGAAGAAACG 766569 28 100.0 32 ............................ AAGTGTCCGCGCTCACGTTAATCCCCGTAAGC 766509 28 100.0 32 ............................ AAGCCACAGCGCAGATGAGCACGTCATCACGT 766449 28 100.0 32 ............................ GATCCAAGCGTTACAAGTGAATCGTGGCTCTT 766389 28 100.0 32 ............................ AAGCACTATGCCGATAGCTCCCCAAAAGTCAT 766329 28 100.0 32 ............................ TAGCAATGGCAACAGCCTTTTTTATTATAGTT 766269 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 766209 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 766149 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 766089 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 766029 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 765969 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 765909 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 765849 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================ ================== 23 28 98.6 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //