Array 1 64465-69043 **** Predicted by CRISPRDetect 2.4 *** >NZ_JATL01000081.1 Brevibacillus agri 5-2 isolate Brevibacillus agri 5-2 contig_81, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 64465 32 100.0 35 ................................ AAATTGCTCTGATTTTTGTTAAATCTCATGCACCG 64532 32 100.0 35 ................................ AGCACCATACTTGTCAATTAGCATCTGGATGTTGT 64599 32 100.0 35 ................................ TTTGATGATTAACCATCCTTTTTCGCAATCGTGGC 64666 32 100.0 35 ................................ AGCAACAGGATTTGGTCCACTACGGACTCGCGTTT 64733 32 100.0 33 ................................ TCTTTTTCGACCGTATAAAACGTCTTTGCCGTC 64798 32 100.0 37 ................................ ATCCAACGCTCGATCATTTCGACGGCGAACCAAGGCG 64867 32 100.0 34 ................................ GCAGTTGCACCTCCGTCCTGTTCCACACCTCAAC 64933 32 100.0 35 ................................ AAGCATTTCGATGAGCCAGTCCAGTCGACCATCGT 65000 32 100.0 36 ................................ GTATACCCTGACTTGCAGACGACTCTGAGGCGACCC 65068 32 100.0 34 ................................ GCCGGGCCTCAAAATATAGACATGTGCCCACTTT 65134 32 100.0 33 ................................ ATCACACATGCACACGGCGACCACATCAAGGGT 65199 32 100.0 34 ................................ GTGATAATCGGGAGCGGTACTTCGAACACCTGAC 65265 32 100.0 34 ................................ AAGCTCTTCCAACTCGCGATCCAGCCACCACTTG 65331 32 100.0 35 ................................ TGGTGAGGTCGCCAAACTCTACAACCAGATCGCGG 65398 32 100.0 37 ................................ ACACACTGAACCTATACATCAATAGCCCAGGCGGTTC 65467 32 100.0 36 ................................ CGCGAGAATGCTACGATCACCATGCGTTATGCTGAC 65535 32 100.0 34 ................................ ATCAACTGCGGGCTTGATAAAGTCACGTATCTCT 65601 32 100.0 34 ................................ TCTGGCAATCTGTTTGGCTGCCTTTGTTACGCGG 65667 32 100.0 38 ................................ GCCGAGACTGAGTGTGAGCTTGCTGAAAGTGGTGTCGC 65737 32 100.0 32 ................................ ATCTACGCCAAGAGCCTTTGTACTGCGGCCGA 65801 32 100.0 35 ................................ TAGTAAAACGCAGATTCTTGTTGGATGCGAAAGCA 65868 32 100.0 34 ................................ ACCAGCAGGAAGGTGTAACGACCGTTTTTCTTCT 65934 32 100.0 33 ................................ AAGCCGCCAGAGTATGGGACGCCGTTGTATGTC 65999 32 100.0 34 ................................ ACTCTCGATACACAAGGAAGCGTCGAAATCTACG 66065 32 100.0 34 ................................ AAGCATCCTGATCGGCGAACTGGCGAAAATACTC 66131 32 100.0 35 ................................ TTGTCTGTTGTGATGCTCTTGTGTCTACTGATCTA 66198 32 100.0 35 ................................ CGCAAGCACCCGCACCAACACCGATACCGGACACC 66265 32 100.0 34 ................................ GCGGGTGCTGCGGGAGAGGAATCCACCAACATGC 66331 32 100.0 35 ................................ CAAACTAAAGGAGGAACCAATCCATGTTGTTTACC 66398 32 100.0 36 ................................ TTGCGGAGACACGGACGCGTACTACCCCGAGCAGGT 66466 32 100.0 34 ................................ GGAAGGCAAGCACTTCGCGGTCGTCTTCGGCGGC 66532 32 100.0 34 ................................ ATCGACGACACGAGCACGCGGTCGCCCGGCTTGA 66598 32 100.0 35 ................................ ATCCAGCGCTCGACCATCTGTACCGCGTCCCACGG 66665 32 100.0 34 ................................ GAGGGGTACGAAATCCTCGACCGAATTGCAGAGC 66731 32 100.0 35 ................................ AAGACGCATGCTACCGTACATAAACCGCTTCCAAC 66798 32 100.0 33 ................................ AAGAACACTTGTCGCGGAGCGCTATCCTCGAAA 66863 32 100.0 37 ................................ TCGTGGGGTAGGTCGTTATTCGATCAGGAACAAGGAC 66932 32 100.0 34 ................................ TTATCCCGGTCGCGCCCGGTGATGAACTTGCCCA 66998 32 100.0 36 ................................ AACACCAAGCGTATCGGCCAAGACCTTCAAGGTATC 67066 32 100.0 36 ................................ CCTCTTTTTTTCCGCGAGAGCGCGGACGGTCTCTCG 67134 32 100.0 35 ................................ CTCCCCGCCGCCGCCAGCAGCACAATTACCCCAAC 67201 32 100.0 34 ................................ CAGGGCATGGTAGGACTTACCACTGCCAATAGTA 67267 32 100.0 36 ................................ TCTTGGTATGCCTGGGCGGCTGTCTTGGCTATCCCG 67335 32 100.0 35 ................................ GCGATCAGCGCGTCCACAACCGCCTTCACACCGTC 67402 32 100.0 33 ................................ CTAGCGAATTTGTCCCACTCAACCCATCCAACC 67467 32 100.0 35 ................................ CCCTAGCTTAAAATCCATGCGTTACCCCTCCTTAC 67534 32 100.0 36 ................................ CGCTCACCTCCTAGAAATGAAGGATGACAAGCAGGA 67602 32 100.0 35 ................................ AATGACGGCCACGTTACCACCCTCCTAATCCGCTA 67669 32 100.0 33 ................................ GCGCGATTGGAGTTGAGGTTATCGGACATCCAC 67734 32 100.0 35 ................................ GGCTCGTCTACCTGGACAAGCTCCGACAAGCGCGT 67801 32 100.0 34 ................................ CACTGTTGCCAGAAGACTAGGAGGGTTTTTGCCA 67867 32 100.0 35 ................................ CCTTAACCTCTTGATAATCCGTATTACTTCATTAG 67934 32 100.0 34 ................................ TGGCATACTCGTTCAAAAAAGACTGGTAGGAACG 68000 32 100.0 35 ................................ CTGAGTGGCTGGTTCGGAAGATTGTTTTGCAAGTG 68067 32 100.0 35 ................................ GTGTCTTCGAAGGACATGCCAACGCCCGCAGCTAC 68134 32 100.0 35 ................................ AAGTACGGACTCAAAAACTCATGGATGCTCTTGCC 68201 32 100.0 38 ................................ TCCGTCTAAGCAGTCTGACGTGTGGATACAGTCGGTAC 68271 32 100.0 35 ................................ TTCTGAGCCGCCGATCCGGATACGAATCCAATTAA 68338 32 100.0 34 ................................ TTCTGACGCAGGAGTTTTTAGAGCTGACCGAAGC 68404 32 100.0 37 ................................ GCAAACGGTGAGGTCGAGATCATCGAGGACCCACATC 68473 32 100.0 35 ................................ CCGAAAAACAAGGTGGCGCTGCTCGACCGCAATAT 68540 32 100.0 34 ................................ AGAGAGGATGCGGACGACTTCGGCGAGGGCGGCC 68606 32 100.0 36 ................................ TCTGCAACGGAAAGGACCTATAAAACGATAGCTAGT 68674 32 100.0 34 ................................ GGTCAAGTTAAGTCGGCTCATGGGTAAGTTGGAC 68740 32 100.0 35 ................................ AGATGGCCGTCATGTTGACATCGCCATGATATGCA 68807 32 100.0 36 ................................ AAAGTAGGTTCTGGCGCGTTCCTGGCTTTCGGCAGC 68875 32 100.0 36 ................................ TTTGCCGGGGACAAGCCGGCCACTCCGACGATCCTC 68943 32 100.0 37 ................................ CCTTGCTCAAGTTTGGCGATCAGATCGCCACGCTCAC 69012 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 69 32 100.0 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : TGGATGAGTATCCTCCCTTTTTGTGGAAGTAGGTGAATGGTGTGCTGGTATTGATCACGTATGATGTGAGCACAGTTAGCAGTGCAGGGCAAAAAAGACTTCGCCGCGTCTCGAAAATATGCCAAAATTACGGTCAACGTGTCCAAAATTCCGTGTTTGAATGCATTGTCGATTCCACACAGCTTACTTCATTGAAGCTGGAATTGCTCTCGATCATCGATCTGGATCAGGATAGCCTCCGTATTTATCAATTAGGCAATCATTACAAGAATAAGGTAGAGCATTTGGGTGTGAAAGAATCAATTGATTTAGAGGGGCCATTGATTGTCTAGTGCGAATGTGAAGCGCACACGAATTCCCTGGGGGATTCGCACCCGAAAAACGGGTTAAAATGCCGTTTTTTGTCTGCTTTCTCTAAATTATCTTAACGTATGAATGAATTTGAGCGTATTTTGATTACAAATATGAAAATGAAAGCATATTTGGGGTGAAAATTCGCT # Right flank : TGCATGTGCGACGGCTGCTCAGCCAGCTCTTTGTGTCGCATTGATGCTAGACTTTACATTGGACACGGAGAATCGAGAGTGCGACAATAAAAGCGTTCATAATCGAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 87022-86246 **** Predicted by CRISPRDetect 2.4 *** >NZ_JATL01000033.1 Brevibacillus agri 5-2 isolate Brevibacillus agri 5-2 contig_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 87021 37 100.0 37 ..................................... ATGATCTTCTTAACGGCTTTGTCCGAAATCGCATCCG 86947 37 100.0 37 ..................................... AGGCCATTGTCCACCGTTCGGCAGGGATGCTCTCCAG 86873 37 100.0 38 ..................................... CGCCAAAAATCGCCAGTTGGCTGATCGGCAGCACCGTA 86798 37 100.0 36 ..................................... ACGTATTGTGCCACGGGTGAATTTTCCCGTCCGCCT 86725 37 100.0 36 ..................................... GTAAACATCTCCATTGCAGAGGTCTATTTTCGCTGG 86652 37 100.0 39 ..................................... CTTGGAAGTGAGGTATCCAGGCTAATGGACGTATTGATA 86576 37 100.0 37 ..................................... TTTGTCGCGAAGAATCTCTATCATGTATCTCTTGCGC 86502 37 100.0 37 ..................................... GAGATTTCCTCCGGGTATTCTCCTTTTGCCAGGTGGC 86428 37 100.0 35 ..................................... GTGTAGGGTATACCGTCCAACTCCCACGCACGGGC 86356 37 100.0 38 ..................................... GGTTGCTGTTGATACGTCATTGTCGATAGCAGCTCATA 86281 36 91.9 0 ...................A..A.....-........ | ========== ====== ====== ====== ===================================== ======================================= ================== 11 37 99.3 37 GTTACATTGAGGACCCGAGGAACGAGGGGACTGAAAC # Left flank : TTCTATCTCTGAGAGGAAGGAACGTTGCAACGGTTCTTGCAGCCTTATAGATAATACCTTCTGATTGTAAAAATTGATTTGTTTGGACGAGTTTCTCTCTTGGTGAATACTGGGATATTCAAAATTCACTTAGAATGCTGAGTCAAGGGAATATTGGGCGATGGATGGGAATGGCTGTTGAAGGGGAAGAGGGGAGGTTGCGGTGTGCCTCCTTAATTAACAAAAGATATTCTGTAGTGATTTCGTTAGGAAACGAGGGAGCAATCTTACAAAAATGAGGCAAATGATTTATTATAGTCGTGAGAGCACATGATTATACTCTTGAAAGTGAATACTAATGGTAGGATACAGCCGGAAAGCAAGTGGAGAAAAAGTGTTTTCGAGGATGAAGCCTGTTTTTGGACAAAAAGATAATCCTCGAAAAAAGAGAGGAATGTTGAAGGCTTTGACTACAAGCAAAGCCCTGGCATGACTGGGTTTGTTCACGCCGACCAAGGTCG # Right flank : AACCGCATTCTTGATGATCGGGCCAATTTTACGTATCATTACCTTCATTTTTTAACGAAAACCTAATTTTGCAAAAGGCTCAATGATACATCCACTGCTTTTTTCTCGAACGCAGCGTCAAGAGTTCCCCAGACCTTTTCTATAAGAAAACCCCTCATAGTAGACAGAAAAAGTAAGCATGTACTCTGTCTACTATGAGGGAGCATATCATGGACGGGTGGTTATGAATTTATAGTATGTTTATCAGTCGAGAAGGAATTTTTTTGGAAACCAAGGTTTTGGTGCAGAGACTCGCATAATTCTGTATTTACTTTTTTACAATATGATGACGGAATAACTCATCTCGGGCAGGCACTTCCCGATTCGCTCGGCGATAAGCGTCAGCGATCATTTCACAATAGTGGTCAAACCACTCGCGGTTTATTTGGCAACGGGTAAGCCCCTGATAGATTGGATGATTTGTGATGTCAGGGTTTATCTTCTTTAACTCTTCCAAATAG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATTGAGGACCCGAGGAACGAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 2 88586-88327 **** Predicted by CRISPRDetect 2.4 *** >NZ_JATL01000033.1 Brevibacillus agri 5-2 isolate Brevibacillus agri 5-2 contig_33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 88585 37 100.0 38 ..................................... TCCGCCAGCCGCCGCGTCCGGGCACGTAGTCGATTCCG 88510 37 100.0 36 ..................................... TTTAAAAATTTACGTAACCGCAAATCAACTTGCCAA 88437 37 97.3 38 ....................G................ GTCTCCACTACGTCCTGCTCGCGTCCGGTTGCGACCTG 88362 36 81.1 0 ..................A-..TA...AA.......T | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 94.6 38 GTTACATTGAGGACCCGAGGAACGAGGGGACTGAAAC # Left flank : ACGACATGGGGCCAAAGGCAACTTTTGAGAGTATCAGCTCTTTCGATGGAACCAGTGCCAAAATGGGCCGGGACCGGATTATGAAAACGGTGTTCATTCCGTATCAACAGAAGCGAGCAAGCAGGGATTTTACTTGGTACACTCGTGAGGAAAGCTGAGCGGTATGGTTGTGGAAGGGGAGGGAGATGAGGTTTGCCTCCCCTTGTTTATGATAGAAAAGCGATGGGCTGTAGTGCGTTGCTTTCGGGAAGAAGGGAGGGTGGGGCTTATAAAAGGGGAGGAAATGATTTATTATGGTCGTAAGGGTACATGATTATACGCCTGAAAGTGAATGCTAATGGCAGGGCACAGTCGGTTGCAAGTGGAGAAACAGTGACTTTCGAGGATCGGGCCTGTTTTTGGACAGAAAGGGAATGCTCGAAAATAGTCAAGGATATTGAGAGCTTTGACTGCGAGTGAAGCCTTGGGATTACTGGGTTTGTTCATGCCGGGCGAGGTCG # Right flank : ACCAGAACCAAAATCCTCCTGGTTCCATCAGACAGAGTTGTGTTTAGGACATGAGTGGAACGGTGCAAAACTTGTATTCACCCCCTACTTTTAATAAACGAACAGTTCAGTAAAATGGCTAGGATCGTCCGTCTACTGCGCGGGGCTATGCAGCATCTTAGAATCTCAGCTCAATTTGTGCAATTCATGCTCGTAAACCTGCAAGGCCAGTAAATGGAGCTAGTTTGCATACTTTTCCATAGCTCCACTCTTGCAAAACAAAAGACACATTGGCCAACTGAAGTAGCCCGTCCAACTGATAATTTTCCGTCAGCCGATTTCGATAAAGTTTAAGCCGGCTGACGGCTTTTCAGTTTTCTTCTGCATTTGCACGAAATAATCTATAGGGGCTGAGCGAAAAACGCTCTGAATGGCTATCCTTCTCGTTTTCAATTACGAGCGTATAAACAGGAATGGATTCCTTGCGCGTCCCAGTTGCAAACAGTCGTTCTCCCATAGCA # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACATTGAGGACCCGAGGAACGAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA //