Array 1 3071441-3069476 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039569.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014852 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 3071440 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 3071379 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 3071318 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 3071257 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 3071196 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 3071135 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 3071074 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 3071012 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 3070951 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 3070890 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 3070829 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 3070768 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 3070707 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 3070646 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 3070585 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3070524 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 3070463 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 3070402 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 3070341 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 3070280 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 3070219 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 3070157 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 3070054 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 3069993 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 3069932 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 3069871 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 3069810 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 3069749 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 3069688 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 3069627 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 3069566 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 3069505 29 96.6 0 A............................ | A [3069478] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3089065-3087572 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039569.1 Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014852 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3089064 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 3089003 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 3088942 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 3088881 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 3088820 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 3088759 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 3088698 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 3088637 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 3088576 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 3088515 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 3088454 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 3088393 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 3088332 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 3088271 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 3088210 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 3088149 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 3088087 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 3088026 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 3087965 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 3087904 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 3087843 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 3087782 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 3087721 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 3087660 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 3087599 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //