Array 1 293074-294627 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXEQ01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_2218 NODE_2_length_511620_cov_4.00043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 293074 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 293135 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 293196 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 293257 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 293318 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 293379 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 293440 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 293501 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 293562 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 293623 29 96.6 32 .............T............... AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 293684 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 293745 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 293806 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 293867 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 293928 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 293989 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 294050 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 294112 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 294173 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 294234 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 294295 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 294356 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 294417 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 294478 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 294539 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 294600 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 310760-312236 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXEQ01000002.1 Salmonella enterica subsp. enterica serovar Typhimurium strain BCW_2218 NODE_2_length_511620_cov_4.00043, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 310760 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 310821 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 310883 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 310944 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 311005 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 311066 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 311127 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 311188 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 311249 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 311310 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 311371 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 311432 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 311493 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 311555 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 311616 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [311658] 311658 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 311719 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 311780 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 311841 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 311902 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 311963 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 312024 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 312085 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 312146 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 312207 29 96.6 0 A............................ | A [312233] ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //