Array 1 55958-56579 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZCU01000037.1 Prevotella copri strain iAQ1172 NODE_21_length_64140_cov_157.559_ID_41, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 55958 30 100.0 35 .............................. TACAACAACATTTGAAGTTGTTTTGAGCAGGTAAG 56023 30 100.0 35 .............................. TACAACACAAAAGCCCAGTTCCGTATTCATCCTGA 56088 30 100.0 36 .............................. TACAACAACCCCCAATCTCGAAATAGCACCCCTATC 56154 30 100.0 35 .............................. TACAACAACCATTAATAGTAGCAGAACCTGTAGCA 56219 30 100.0 36 .............................. TACAACATCCAACTATCGAGGCACGCATTGCTAGTA 56285 30 100.0 36 .............................. TACAACTGGTGGCGAGGAAGCAAGATAAGCATATGT 56351 30 100.0 35 .............................. TACAACATAGTTTAAGAGGGGCGGCTGTCGCGATG 56416 30 100.0 36 .............................. TACAACTAGAGATTATTACCCTCAGAGCGTCTATAA 56482 30 100.0 36 .............................. TACAACCGCATCCGTCATCCTCCGCTCAGCTTCACT 56548 30 96.7 0 ...................T.......... | T,T [56574,56576] ========== ====== ====== ====== ============================== ==================================== ================== 10 30 99.7 36 GTTGTGGTTTGATGTAGGAATCAAAAGATA # Left flank : ATATTATTCTGGAGAGATCAAAAAACTTTCATTACCTATTATGACATGACAGAAGATAGACTAAATGCTTATCATATAATGTGGTTATTTGTATTTTTCGATTTACCTGTTACTACGAAAAAAGAGATGAAGGCAGCTTCTCTCTTCCGTAAGAACTTGGAGAAAGATGGTTTCTCCATGATGCAATTTTCTGTCTATATCCGTCATTGTGCATCAAGGGAAAGTTTGGAAGTGCATATAAAACGGATAAAATCTTTGCTTCCGGAGGCAGGAAAAGTAAGTTTGTTAAGTGTAACAGATAAGCAATATGGAGATATCTATAACTTCTGGGGTAAGCCCAAAAGTATTAATAAGAGTAAAATATCGAAAAAAGTTATCAGTGAACCTGTTCAATTGGAGTTTTTTTAGTACTTTTGCATTAGAAATTATATCCTACTCACCATTTCTTATTAGATAGAGTGGTTGTTATTTGCTGAAAATCAGTACATTCAAATCTATAG # Right flank : ATTATACAACGAGAATGGCATAGGGGGTACGCGCAGTATCTGGATTCTTGGAACATAGGAAAGAATATGCCCTCTGTAGATGAAATAAAACTTAACGTTAAATAGGCTCTGGGTGGCAAAGAGCAGTTGGTTACAGCTGCTATCGTAGAGAAGTTTGCAAGAAGTATAGGAAACATTTTTCTTGTTTAAATTTACGAAAATCTATGCCTAATCCCACTCCTATACAGGTGACCCCAAATTGCACAATTATTCAATAAAGGTTATGCTATGGTTAGTGAACATATTTTCAATATTTTCAAAGAAGGAGAATTGGAAGAAAAAGTGGTCTGTCGGTAATTCCGACAAACCACTCAACATGGTGCTTTAGAGGGGAAAACGCAGAGCAAAGAGAAATACTACAATCTTGATGTTATTATCTCTGTGGGGTATCGTGTAAAAAACGATTCAAAGGTTCGTGTTCCGTCTCCTCCGGCCACCGCATTCGACTCTTTCAGCTATCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATGTAGGAATCAAAAGATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTGTGGTTTGATGTAGGAATCAAAAGATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.80,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 52870-52442 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZCU01000001.1 Prevotella copri strain iAQ1172 NODE_3_length_190635_cov_130.998_ID_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 52869 36 100.0 29 .................................... TCTTTTGATGTCTTTACCGCATTAACTCC 52804 36 100.0 30 .................................... TGCGTGTGATAAGAAGCCTTTCCGTGAGGG 52738 36 100.0 29 .................................... CAAGAAACGCCCTACCCGCTTCATCATGT 52673 36 100.0 29 .................................... TACCGAAGTTGCATGATGTCATGCAGAAT 52608 36 100.0 30 .................................... TTTGTGGAGCGATTGTGCGATAGTCCATCT 52542 36 100.0 29 .................................... CATGATGGCACAAATACTGAATGGGATGC 52477 36 97.2 0 A................................... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 99.6 30 GGTGGTTATCATCTTGAAATGAAAGGTATATCCAAC # Left flank : TGCATATTTTTTGAAACTGCAAAACTTTTTGCGAATAAACTTTTGTAAAGTACCCTGTTTTGAACGAAGATTACACATTGTTAGTGTAAATTTGGCTCGTTTAACCATCAACTTCTTCAAAAGGTATAGTGTTGCTACCAGTTGAGTTTACAGTTGATTCTCCTGTAGAGCTTCAGACTGTTACACTTCCAAAGACACTGATGATTGCGCCAAGCGGAGTGTAATAGTCCATTTGTCGGTTGTATTCAGTTGCAGTTTGGGCAGTTTTGCTGCAAAAACACTTTTTTACCTTAAAATCTGTTCATAAATAGCTTATTCTCATTTATTTTTTGTATTTTTGCAGAGCATTCGCAATAAATGCGTTTGTGAATAATTATTTCGATATGAAAATAGTTGAATTAAAATATTCAAATGGGGTTGTTGGAGACCCTTATGCTGAGGATTTATGTCACTCGGTAAATACCTTAATTAATTATATAACAGGCAATTGTTATTAATAG # Right flank : TTGGGGGTAACGCTGACAATGGTGCTGCGTTGGTGGTTATCATCCCAAATAAGAGTATTCTATGCTAATTCATAAAAGTGCAATTAATTATGTCTAAAATCACAAGAAAAATAGAAATTATCCCTGATGTTGAGGGATTAACCCATGAAGAGTCAAATGAAAAATGCTATAAAGCATTTTACAATTATGACCGAAAATTGTACAAGGTGGCAAATCTCCTTGTAAGTCAATTGTATGGATTAGACAATCTGTTATCTTTGATGAGACTACAAAATGAAGAATATGTAGATAGTCAACGCAAGTTGTCTTTTAAATCAACAACTGATACTGCTAAAGAAGAAATTAAAAAGCGTATGGAGGAAATAGATGCGGAACTTATGGCTATTAAAAAGAAAATAGCTCCAATGCATCCACAGTCATACTCATATCGTGCTGTAAATAGTAGCGAATATGCAAAAGATATGCCTTCAGATATTGTTGACTCTCTAAAGCAAGATGTA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGGTTATCATCTTGAAATGAAAGGTATATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.80,-1.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA //