Array 1 3980-316 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHNR01000065.1 Lacticaseibacillus songhuajiangensis strain 7-19 contig65, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3979 36 100.0 30 .................................... TCGAAGACCTGTTCAAGTTCGGAGGTGAGG 3913 36 100.0 30 .................................... TTGGCACTTGATAGACCATACACAATGTTG 3847 36 100.0 30 .................................... TACCCGTCTTGCGTCTCACCGGCGTTTTCC 3781 36 100.0 30 .................................... ACATCTGGCGTGGTGTAAAAATCAGGTGCA 3715 36 100.0 30 .................................... ATAAACCACTAAATAGCCCAATATCACCAA 3649 36 100.0 30 .................................... AGCACATGCGGCACCCATGGCGATTTTTGG 3583 36 100.0 30 .................................... CCGCTCATAAGAAAGCCGTCGCCGAGCGCA 3517 36 100.0 30 .................................... GAGCTTGTCAGGGTCACTGTCAGGCAGATG 3451 36 100.0 30 .................................... CGTGCCACGGCCGGTGCATTGGCAACAGTC 3385 36 100.0 30 .................................... AAGGAATCCGGCTAAGTGCCGAAGCTTTTG 3319 36 100.0 30 .................................... TTAATTCTGACTAATATTGATAGAGTAAGC 3253 36 100.0 30 .................................... TCCAATTGCCGCACGGAACCTGTGGCGCCC 3187 36 100.0 30 .................................... GTGGCACGTCCTCCATGATTTTTGTTGGGG 3121 36 100.0 30 .................................... TTAATTCGTGCCATCTTCTGGTCGTTCTTC 3055 36 100.0 30 .................................... CTAGCGGACGTTAAGCCGGTGCCCATTTTG 2989 36 100.0 30 .................................... TGCCACCTGTCTTCCAAGGCGACTTTGAGG 2923 36 100.0 30 .................................... CCTGGAGCACCACCGGACGTCACGATGTTG 2857 36 100.0 30 .................................... ACAAGTATGGGCAGGCAGTTATGACCGCCG 2791 36 100.0 29 .................................... CATGCGAAGTGGCAACCCCGGAGGTTTCA 2726 36 100.0 30 .................................... GTCATGTGCGGCCTTGTACGCCAAACGCTG 2660 36 100.0 30 .................................... GGAATGCTTACAATATCATGCCCGCTCGTG 2594 36 100.0 30 .................................... CAACCGAACCACAGGAGGCATAAAACATGT 2528 36 100.0 30 .................................... CCCAGTGGATTTTAAGCAGCTACATCACCT 2462 36 100.0 30 .................................... TACGCGGCCTGCAAAGCCGTCGTCTGCTTG 2396 36 100.0 30 .................................... CCACGAACTCGGTTATGAGCATCAAGGCCA 2330 36 100.0 30 .................................... TGATACGGGTCAAACTCTTATAAACACCCG 2264 36 100.0 30 .................................... CGCATCCTGGTCGTAGAAGTCAGCAAAATG 2198 36 100.0 30 .................................... GCTCTGACGTGCTTTGCTTACCAGTTCCGT 2132 36 97.2 30 ......T............................. ACTGTCTGCACCGATACATTTACCATTTGC 2066 36 100.0 30 .................................... CGCTGCCAGTGCTTTACCCAGAGCAGCTCG 2000 36 100.0 30 .................................... TTTGCTGGCCTGAAATAATGTCTTTGGCCG 1934 36 100.0 30 .................................... TCTACCCTTATGCTACCTACACTCCCGGTG 1868 36 100.0 30 .................................... AGGCTGGCGGTGATACGCGTTCCGCAGTTC 1802 36 100.0 30 .................................... TGGAAACCCTGTACGACGGTGAATGGGCCT 1736 36 100.0 30 .................................... AGATTAAGGACGCAAAGATTCTACGGATTT 1670 36 100.0 30 .................................... CTGGACGCAGTCTTAAAGTTGACGCCGCCG 1604 36 100.0 30 .................................... CAGTCTGGTCAAACTTGCGGCCTCGAGTGA 1538 36 100.0 30 .................................... CCGAATTGTGAGCTAAGAGGCTCAGTCATT 1472 36 100.0 30 .................................... AAGACGACATCAAGGCCGCCAAGGCAGAAC 1406 36 100.0 30 .................................... GCGTAAGTCCACACCGTTAATGTTTCGCCA 1340 36 100.0 30 .................................... GAACTTTACAGGGTTCTTTTTTTGCTCAGC 1274 36 100.0 30 .................................... CAATGGATGCGGCGCAGGCTCCAAAGGTTG 1208 36 100.0 30 .................................... GGTGTCGATGTGTAGCGCCTGAGGCTGCTG 1142 36 100.0 30 .................................... GTCGAATGTGCAATGCTTTTGTGTTGCCTC 1076 36 100.0 30 .................................... AAACGCCGCCAGACGCGTTATAACATGCCA 1010 36 100.0 30 .................................... TTCAAACAGCCGTGGTTAACGCTCTGCTCT 944 36 100.0 30 .................................... ACGGTTTAAGTACTGGGACTCAAGCCATGA 878 36 94.4 30 ...............A.........T.......... CAGAATTTAACGCCCAGGTGGCCACCTTAA 812 36 97.2 30 ...................................T TCTGCCGAAGCCACGCTCTTTTGCGGAGCG 746 36 100.0 30 .................................... ATCTCGCCGACCGCGCACAGTAGACAGATT 680 36 100.0 30 .................................... TGAAGAGTAGTTTTGTTGTAATGCGGGTGC 614 36 97.2 30 A................................... ACTTATGATTTCCTTCATGCGGCCTGATAC 548 36 100.0 29 .................................... CAGCCTCCGCGGTAAAATAGTCTTGTCAG 483 36 100.0 30 .................................... AGCCATCTATGCGTGAACCGGGATCTGCAC 417 36 94.4 30 ....T..............A................ ACCAGGTGGCGCCATTTGCCAAAACGCTCA 351 36 83.3 0 ............T...G............AA.T..T | ========== ====== ====== ====== ==================================== ============================== ================== 56 36 99.4 30 GTTTCCGAAGGTCGTCATTCTGAATAGGTCGAGAAC # Left flank : GGGATTGACTTTGATTCTCTGTTCTTGAAGCCGCTAACAAAAAGTCTTCTTAACTATGCGACTGATAATGCTAAAGTAAAACTGCTTGATGCACAGCGTGAAGTTTCGAGGCTCGTGTTAGATGCCAGTTTCAGCATGGATGTACCGTTGGTTGTGAAGGATAATCTATCCTTAGAATCGATAATTAAGTTTGTCGGACTCCATTTAGAGATGCCTCCAGCAGATCTGATATGTGCTAAAATTGAACTACTATTTAAGATACTACAGGAAATATCCGATTCTAGATTGGTGGTAATTACCGACCTAAGTCATTTTGTGGATGCGCAGGAATTGGCGCAACTGGTCGAACAAGTGACTGACTCAGGATTGACAGTTCTTCTAATCGAGTTCTCAAATACGTCTAGGGCATCTGAATTTAAGAAATGCCGGTATTATTACGTTGACGAGGATTTAGTTGATTTCCGTTAAATACATTATTGTGAAGTGATGTGAAAAAAACG # Right flank : TTTCGTCGCGCCAATATATTCGAACAAACTAAACTCAATACCACAAGCTAATAAGGAGTTGACAGAAAAATGGATCAAGACGAGTACCAGCGGCTACGCGATGCCATACATCGAAAAATTTGGCGAATCACTATCCCTGCATCTTTTACCAGGAGAGAATCCAGAAGAAACCATTCAACGAGCATTGGACACTGGAGAACCCATTCGGGATGAATTAGATGGTAAAGACAGTATTATCTAGTGGCTGGTGAATAATTTGTCCAAGCTATCTGTAACAGTTCCTTAACCCGTTATCGTTGTATAATAGATGCATAGG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGAAGGTCGTCATTCTGAATAGGTCGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //