Array 1 15296-15005 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZAY01000008.1 Prevotella copri strain iAK2615 NODE_43_length_20469_cov_69.7027_ID_85, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 15295 30 70.0 35 C.G.ACACCCT................... TACAACTGATGAGCCGCATAAAGCAACGATTTTAA 15230 30 100.0 36 .............................. TACAACTTCTGACTGAATCTTATTAGTAAGGTTAAG 15164 30 100.0 35 .............................. TACAACAACCATATATCACATAGTCAATGGTAAGA 15099 30 100.0 35 .............................. TACAACGCAAAGTTCCAAAAGTAACACCATCTTCT 15034 30 96.7 0 ..........................T... | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 93.3 36 GTTGTGGTTTGATGTAGGAATCAAAAGATA # Left flank : ATCAGGTTGTGGTTTGATGTAGGAATCAAAAGATATACAACAGCAGATGGCGGCGGTTGATGCTAAGATGGTTGTGGTTTGATGTAGGAATCAAAAGATATACAACTTCATCGTGAATCTATTTGAGAATATCACAGTTGTGGTTTGATGTAGGAATCAAAAGATATACAACACTTACTTTGCAAGCGACGGCGAAGGCGTGGTTGTGGTTTGATGTAGGAATCAAAAGATATACAACCCAGGAGATAAAGACGCAGAACCAGCCCAGTTGTGGTTTGATGTAGGAATTAGGGTGTCCAGTTCCATGTTCTCGTTTTTGATTATGTTTTAGCAACTTAGCACACTGTAAATCAGTAAATTAAGCACAAAATATAAGACAAATTTAACTATCAAAAAGTCTGATGTAGATTCGCACAAGATTATAGTTTATTTAGCGAATGATTATCAATGACTTAGATGGTTATTACATTGTTTTTGATACTAAAAACTGGAACACAGAA # Right flank : TATTATATACACGAGAATGGCATAGGGGCTGGCGCAGTTTCTGAATATCTTGGAATATAGGCAAGAAAGAGTCTTGTTCTCCACGGACTTCAATCTTTTCAAAAGAAGAACGGAAAAGATAAAAGTATCTCTGTCAGTATATGATAGTGCGGTAAAATGTATTGAGGAAGTGGAATGTGGCAAAAGAACTCAGCAAAACTATTCTTCTGAACTAAGAAACACCATTTGCCCAATAGATAAGAAAAACAATGCTGATGTGACGATAAGGGCCAACACGCCGTAGATTGATTGGGGATTGTTGACACAGTATCCTATGCAGGCAACCCAAACAGCGAAGGACAAAAGGCTGTTGTCACCCAACGCTCATATTTCTTAGAGTGCTTCGGGGGAGTATCTTCGCCTACTACTTCAATGCTAACGATTTCTACCTTTATTTCATGTTCGGGCTTGTTCGATTCTTCGTTGTTGTTTGCAGCGTCTGATATGCTGTTGTTGTTCTG # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATGTAGGAATCAAAAGATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATGTAGGAATCAAAAGATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [4-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 16116-15499 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZAY01000008.1 Prevotella copri strain iAK2615 NODE_43_length_20469_cov_69.7027_ID_85, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 16115 30 100.0 35 .............................. TACAACAGCCCCGTAGTGGTGGCGAGGAAGCAAGA 16050 30 100.0 35 .............................. TACAACGATAAGAAAAAATTAAAAACGGTCCTTAC 15985 30 100.0 35 .............................. TACAACATATGTAGCCCCGAATTACGGGGCTGAAG 15920 30 100.0 35 .............................. TACAACGTTTGCTGCATGCCAATTGAATCCAACTC 15855 30 100.0 35 .............................. TACAACTTCAAAATCGTTGAGGGGCGCAGTATCAG 15790 30 100.0 35 .............................. TACAACAGCAGATGGCGGCGGTTGATGCTAAGATG 15725 30 100.0 36 .............................. TACAACTTCATCGTGAATCTATTTGAGAATATCACA 15659 30 100.0 36 .............................. TACAACACTTACTTTGCAAGCGACGGCGAAGGCGTG 15593 30 100.0 35 .............................. TACAACCCAGGAGATAAAGACGCAGAACCAGCCCA 15528 30 76.7 0 .....................T.GGGTG.C | ========== ====== ====== ====== ============================== ==================================== ================== 10 30 97.7 35 GTTGTGGTTTGATGTAGGAATCAAAAGATA # Left flank : ATATTATTCTGGAGAAATAAAAAAACTTTCCTTACCTATTATGACATGACTGAAGATAGACTAAATGCTTATCATATAATGTGGTTATTTGTGTTTTTCGATTTACCTGTTACTACGAAAAAAGAGATGAAGGCTGCTTCTCTTTTTCGTAAAAACTTGGAGAAAGATGGTTTCTCTATGATGCAATTTTCTGTCTATATCCGTCATTGTGCATCAAGGGAAAGTTTGGAAGTGCATGTAAAACGGGTAAAATCTTTGCTTCCGGAGGCTGGAAAAGTAAGTTTGTTAAGTGTAACAGATAAGCAATATGGAGATATCTATAACTTCTGGGGTAAGCCCAAAAGTATTAATAAGAGTAAAATATCGAAAAAAGTTATCAGCGAACCTATTCAATTGGAGTTTTTTTAGTACTTTTGCATTAGAAATTATATCCTACTCACCATTTCTTATTAGATAGAGTGTTTGTTATGCGCTGAAAATCAGTATGTTCAAATCTGTAG # Right flank : CAGTTCCATGTTCTCGTTTTTGATTATGTTTTAGCAACTTAGCACACTGTAAATCAGTAAATTAAGCACAAAATATAAGACAAATTTAACTATCAAAAAGTCTGATGTAGATTCGCACAAGATTATAGTTTATTTAGCGAATGATTATCAATGACTTAGATGGTTATTACATTGTTTTTGATACTAAAAACTGGAACACAGAACTGGACACCCTATGTAGGAATCAAAAGATATACAACTGATGAGCCGCATAAAGCAACGATTTTAAGTTGTGGTTTGATGTAGGAATCAAAAGATATACAACTTCTGACTGAATCTTATTAGTAAGGTTAAGGTTGTGGTTTGATGTAGGAATCAAAAGATATACAACAACCATATATCACATAGTCAATGGTAAGAGTTGTGGTTTGATGTAGGAATCAAAAGATATACAACGCAAAGTTCCAAAAGTAACACCATCTTCTGTTGTGGTTTGATGTAGGAATCAAAATATATATTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATGTAGGAATCAAAAGATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATGTAGGAATCAAAAGATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //