Array 1 124460-125159 **** Predicted by CRISPRDetect 2.4 *** >NZ_AZVD01000011.1 Salinispora arenicola CNT799 K389DRAFT_scaffold00007.7_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 124460 28 100.0 33 ............................ CTGGGCGATACTCGCGGCGGCGGCGGCCGGCAT 124521 28 100.0 33 ............................ CCTGCCCACCCCCGAACCCCCGACCAGCGCGGC 124582 28 100.0 33 ............................ CGTCTCGCCACCAGCGGCGTCGAAGGCGACAAC 124643 28 100.0 33 ............................ CACTCCGTAGCCAAGGAAGTGCCATGACCGAGA 124704 28 100.0 33 ............................ GAACGTCCGGCGCATGGTCGGCAACACGTTCCC 124765 28 100.0 33 ............................ CAGGCCCCGCACGACGATGCCCCGGGCGAGGAT 124826 28 100.0 34 ............................ TGCGCCGCTGGACAGGCCCCGCACGACGATGCCC 124888 28 100.0 33 ............................ CAGCCCACCGCACGACGAATACGACGGCACCTC 124949 28 100.0 33 ............................ CGCCGCAACGGCGCCCGCTGGTTTCTCGGACTG 125010 28 100.0 33 ............................ CGCCGCAACGGCGCCCGCTGGTTTCTCGGACTG 125071 28 100.0 33 ............................ GCTACTCCGACAGTTGCAGGTCAACCAACGTCC 125132 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 12 28 100.0 33 CTGTTCCCCGCGCAGGCGGGGGTGATCC # Left flank : AGCGCTGTTTGCAGCACATCCGTCGCCTTGGGCCCGTTGACAAGCAAACTCATCAACGCCCGCGACGAGAGGTGGACGGTCATCGGTTCAGCCCCTTCTGCAGTGCATCCGTACACAGATCATTGTCGTCCAGTGTGGATGAGATTGTTGAGGCCGACCCGTGGATAGCCGCGACAGCTGCAACTCACCTGCAGTTCGGCCAGCCGCCGCATGATCGACCGTTGCGATGACCACTCGAATCCGCTCCCCGGAACCCCGGCGGACAGAGGCTCAAGGTTGAGCTGTCATTGATACAGTGGACTGCCAACCGCCAGCCGTCCGTTGCCAGCGATGTTCTGCCGGCCTCCACAGCTCTGCCAGCCACTCGGCTTGGGCCTCACTAACTATGCTGCAGCCGAGAACGCTAGCCTGCCATGTCAACTGCTACGGAAAGGACGATCTTGCGGGCCCTAATGAATGAAATCCGGAAGATTGATCTCTAGCGTCGCAGGTGAAGAAGT # Right flank : CCGCGTCGACACCGTTCGGGATCATAGCTGGGGTTGAGGTTGAGGCGGCCCGTGTAGTGGGCTCGTCGGGTTCGGGCGTGATGGCGGCGTCGCCATCCTGACCAGTGCAGACGGTGGGCCCGTAGGCAGCATCCATACGGTCACCGCATCGACCGGTGTGGCGTCGACGCGTCCCGTAGGGGGCGCGAGTTGGGTCTGTCTGCGCTGCGGCCGGCACTACGACGAGTACGCCGAATAGGCCCACATGTAGCGAACAGCCGAGCATTCGACCCGGTGGGCTTCCGGATACGGTCCGGCCACCCGTGAAGCGCAGGGGCCGCGCAGTCGATGTCCAATGCGTCGAGCCGCGCGGCTTCGGTGACCGCGCGGCCCTGCTCGATCGACGCCGGGGCCAGGGCCGAAGCTGCCGGAGGCGCCTACCGTGACGTGACCAGGAACGGTCAATCCTGGTCACCCCCGGGTCGGCGGGCGATCAGGACGCTGCGATCGGCGGTTGTGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCAGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 93930-93472 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI911344.1 Salinispora arenicola CNT799 K389DRAFT_scaffold00020.20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 93929 30 96.7 32 .............................T CGATCAGTTCGTAGCCGTAGGTGGCGTCGGGC 93867 30 93.3 31 ............................AG TATCGGAGGGTCCGGTCGGGGTGGCGTCTGG 93806 30 100.0 31 .............................. CGATCAGGGCCTCACCCGGGACGGACTGCTG 93745 30 96.7 31 .............................G ACCAGACGTGACCCGCCCCCGCGACATCGGC 93684 30 100.0 31 .............................. AATTCTGCCGCGCGGCACATGGTTTCCGACG 93623 30 96.7 31 .............................G ACCAGACGTGACCCGCCCCCGCGACATCGGC 93562 30 100.0 31 .............................. AATTCTGCCGCGCGGCACATGGTTTCCGACG 93501 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================ ================== 8 30 97.9 31 GTCCTCCCCACGCACGTGGGGGTGCTCCGC # Left flank : CACGGCCGGGCCGTGCCCGGATACCCGCCGTCCTCCCCACGCACGTGGGGGTGCTCCGCTACGGCCGGTGCTGCCGCTGCTGCTGATCAAGTCCTCCCCACGCACGTGGGGGTGCTCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCAGTCCTCCCCACGCACGTGGGGGTGCTCCGCCATCACCGGGGAGGCCATCCCGTGACACCGC # Right flank : CGTCGGGCTACAAACCGAAACGGTTGACACCGTCCTCCCCAGACGGCGCGGAACCTGTCGTTGGCCATGATCACGGCGCGGTTGAGGGGTGATCTGGGCGTTCGCCGAGCACGTCAGCAGTCACCCGTGGCAGTGGCTGCCGCAGATGGTTGACGAGTGGAACATCGCGGTGCGCGTGCAGAGCAGCGAGTCCGATCCGCGCAAGTGCGCGCTCACCGTTGATGAGCTCTGAGCGCTGATCGATTACGCCGACGAGCAGGTCATGCGGATCCGCGGTGTGGGCCGTAAGGGCTGGCTGCCGGCGTTTCGGGACGCGACGCTGCTGGGGGTCGGTCGGCCCCCGTTTACCCCCCGAAAACTCCTGCCAGGAGCTGACGAACAGTGACCAGGAGGAACAAGTATCTGACCGTGTTGGTGCAGCTCAGGGCTTACTCGCGACAAGCGATGACATGCCCGGTGTGACTACGGTTGGTAACAAGGGGTCGTCGGTTCGAATCCGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGCTCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 94523-94310 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI911344.1 Salinispora arenicola CNT799 K389DRAFT_scaffold00020.20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 94522 30 100.0 31 .............................. CTGCCGTCATCTCCCCCGCCGGGGCGGCCAA 94461 30 96.7 31 .............................T CTCACGGCCGGGCCGTGCCCGGATACCCGCC 94400 30 100.0 31 .............................. TACGGCCGGTGCTGCCGCTGCTGCTGATCAA 94339 30 96.7 0 .............................N | ========== ====== ====== ====== ============================== =============================== ================== 4 30 98.3 31 GTCCTCCCCACGCACGTGGGGGTGCTCCGC # Left flank : TACCGACATCCAACATCTACTCGACCCCGACAGCACACCTAAACAGCGGCAACCCGCCGCCGAAATCACCTCACTCTGGGATCCAGAGATGGGAGCCATGCCGTCCGGAGTCAACTACAGCTCAGACCCCTGGGACTAGCATGGCTTCCCTTGTCGTCCTGGCAACCACGGCCGTACCCGATCATTTACGAGGCGCACTCAGCCGCTGGATGATCGAAGTAACACCCGGCATGTTCGTCGGAACGCTCTCAGCCAAAGTCCGCGACGAGCTATGGAACGCAGCAAGCAGCGTCGTCGGCGACGGCTCCGCCGTCCTTATCCACCCAGACGACACCGAGCAAGGCTTCTCCCTACGGACAGCAGGAGCACGCAGACGCCGCCCGGTTGATTTCGACGGCCTCACCCTAGTAGCCATGAGCCCCAATGAACGCCACAACGACGCTTCCACCCCAGCAGAAACCATCTGGCCGGAAGGCTGGTAAAACCGCAGGTCAGTAAGT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCAGTCCTCCCCACGCACGTGGGGGTGCTCCGCCATCACCGGGGAGGCCATCCCGTGACACCGCGTCCTCCCCACGCACGTGGGGGTGCTCCGTCGATCAGTTCGTAGCCGTAGGTGGCGTCGGGCGTCCTCCCCACGCACGTGGGGGTGCTCCAGTATCGGAGGGTCCGGTCGGGGTGGCGTC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGCTCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 103963-105945 **** Predicted by CRISPRDetect 2.4 *** >NZ_KI911344.1 Salinispora arenicola CNT799 K389DRAFT_scaffold00020.20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 103963 30 96.7 31 .............................G GGGTGGCGGCCCCCTGGTTAGCGGTCGAGGC 104024 30 96.7 31 .............................A ATTTGCAGCCGTGGACGACCTACGGCGAGCG 104085 30 100.0 31 .............................. TGCCCGCCGACATCTGCCCCGAGGGCAAACT 104146 30 96.7 31 .............................G CGCCGTGGACGCCCTAAGCGATCTGCTCGCC 104207 30 93.3 31 ............................CT GGTCGGCCGGGAGGTCGGCCAGATCGGGTTG 104268 30 96.7 31 .............................T ACGGCTGCCGCAAAACTGCCTGCACCACCGC 104329 30 100.0 31 .............................. GACACCTTGGTGTAGGCGGCGTTCGGAATCG 104390 30 100.0 31 .............................. CGGAGGTGCCGACACGACCGGCCGGCGCACC 104451 30 96.7 31 .............................T TGCGTGAGCTGGTGAAGCAGGGCGTGTTGAC 104512 30 100.0 31 .............................. CGACGCGCGGCGGCAACTCAGCGACCACAAC 104573 30 96.7 30 .............................G ACCGCGCCCACGGTGGATCAGCCGACCAGT C [104597] 104634 30 96.7 31 ............................C. TCGGCCAGGTGCGAGGTGAGCTGGTCGTACG 104695 30 96.7 31 .............................G TCAACATTCGATCGGCTCCTGTCTATGCGCC 104756 30 96.7 31 .............................G CGAAACTTTCGGTGCGCGGCGCGTAAGTCGT 104817 30 96.7 31 .............................G AACTGCGGTATTCAAGCTGGCATCGCCAAGT 104878 30 96.7 31 .............................G AGTCGATGCGTGAGGTGGAGCGGCGGCATGG 104939 30 96.7 31 .............................A CGAGGTTAGCGGCTCCGCCCCCTCGGGCTGT 105000 30 100.0 31 .............................. GATGGGGGCTGTAATGGCAGCTGGAGACCGC 105061 30 100.0 31 .............................. CCACCGCCCACACGCCCAGGCTCGCCGCCGG 105122 30 100.0 31 .............................. GATGGGGGCTGTAATGGCAGCTGGAGACCGC 105183 30 100.0 31 .............................. CCACCGCCCACACGCCCAGGCTCGCCGCCGG 105244 30 100.0 32 .............................. GGTAACGCAGCGACAGAACCTGCTCCGCTCCC 105306 30 93.3 31 ......T......................T GGGCTGCCCTACCGCCGGCCCAACAGCAGGC 105367 30 100.0 31 .............................. CGCCAACCGCGCCATCGTCTACACCCGCCGC 105428 30 96.7 29 .............................T CGTCTGGGCCCTCGGTCTGGGCAATCTCG 105487 30 90.0 31 A..G.........................T CGAACCGGGCACGACACCACACGCCGGTAGG T [105491] 105549 30 96.7 32 .............................A CCTGCTGCCCGATGCCCCCCACCAGCAAAGCC 105611 30 96.7 31 .............................G TTGTGATCTCGCGGCCGGGACCGGTGGTGCC 105672 30 96.7 31 .............................A CGTAGACCCCGGCGGGGCCCGGCACACCCTT 105733 30 96.7 31 .............................A CAACAGCGGATGCGTGATACCCCGATACGCC 105794 30 100.0 31 .............................. CGTGTTCTTCTCCCGGCTTGATGATGAGTGG 105855 30 96.7 30 .............................T CACCGGCGAGCATCAGATGGGTGGTGTGGT 105916 30 96.7 0 .............................G | ========== ====== ====== ====== ============================== ================================ ================== 33 30 97.4 31 GTCCTCCCCACGCACGTGGGGGTGCTCCGC # Left flank : CAAAGGAGCAAGAAGATCCGGCATGGCCAACTGACCAGCGGTGTCGTGCCTCAACGAGCCATCGCCTACAACATCCTCATACGATCCGGCACTCCGCAGCGCATCGAACGCGCTCCCGTCCTTCTTCTGAAACCCTGGGGTTGCCTTGCCGACATCGTGTAATCCCGCCCAAAACATGATCAACGATTTAGCGTGACTGTCGTCGGTGGCCAGCCCCTCCGCGATGACCCTCCGTTGGTTCGGGGCCAGATAGCGATCCCACAACGCACCAGCAACGGCCGCGGTATCAATCAAATGCCAGAGCAACGGATACGGTCTCGGGAGATGGTTAGACTTGCCCCAGATCCCAGCATCGACCCCGTCATGGTCGACCCCCAATCCGACCCCTCCATTCGTACCCGCTCGGCAAGGGCATCAGCATGCAACCACAGCCATACGACACCACGACTCGACCGACGCAAAACCGCTCCCACGGCTGATAAACGCGCAGGTCACGAAGT # Right flank : TTGT # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGCTCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCACGTGGGGGTGCTCCGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //