Array 1 325346-326473 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOGM01000001.1 Escherichia coli strain MOD1-EC5142 MOD1-EC5142_1_length_326587_cov_24.3908, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 325346 29 100.0 32 ............................. CGCCAGTGGGGGAGCCGTGAGGACCTGACCTG 325407 29 100.0 32 ............................. CTGACCGGATTTATTAACCCCGTCAACCGTAC 325468 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 325529 29 100.0 32 ............................. GGCGGCATTACTGCTGCGAGTATAACTACGAT 325590 29 100.0 32 ............................. CCGCCTGATGGCGACGCGTCTTTTAACCCCAT 325651 29 100.0 32 ............................. TTCGTGATTCAGGATCTGGCGATTTATCAAAA 325712 29 100.0 32 ............................. TAACGACAGAGGGATTCGGCAGCGAAGAGGAT 325773 29 100.0 32 ............................. CGTAGTTTCGGCAGTCCAGTGCCTCGTTACGT 325834 29 100.0 32 ............................. ATAGAACGGGACGAGATTTTTAAACAATGGCT 325895 29 100.0 32 ............................. CAATCTGAGCCAGACGCGACGAATAAAAGCAT 325956 29 100.0 33 ............................. TTGACGTTGATTTTGTTCGTTATGTTGCCAGCC 326018 29 100.0 32 ............................. CTCTGATTCATCGGCGGCGATACTGTCATCAC 326079 29 100.0 32 ............................. GAAAAACAAATAGATGGATAGCTCGATATCAT 326140 29 100.0 32 ............................. CGGCTTATTGCTCTTGCCGACGGATTACAGTG 326201 29 100.0 32 ............................. GGCTGGTGGGTTCGGGTAACTGGTTTGCTGTC 326262 29 100.0 32 ............................. TACATGTTGATGACGTTTGCCAAATGCCATGG 326323 29 100.0 32 ............................. ATTATTAATTCTGGTGGCGCTGGTCGCCCTGG 326384 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 326445 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 100.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATATTTTGTCGCCTCTGAAAAACCTCAATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGCGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCAGAAAACATGAAAAAACTTTGGGAGGGGATGAGTTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 60989-59374 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOGM01000024.1 Escherichia coli strain MOD1-EC5142 MOD1-EC5142_24_length_65330_cov_24.2172, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60988 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 60927 29 100.0 32 ............................. AAAAAATGCGACGACCGCAGCCATTCCGATCT 60866 29 100.0 32 ............................. AGATCAACACGGTAGATATTTCCGTGATTGGG 60805 29 100.0 32 ............................. GCGTTGGAGTTCGCGGCGGCATTATTGAGCCT 60744 29 100.0 32 ............................. AGTCTTTAATCAAAATGGATTTTTATAATGAA 60683 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 60622 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 60561 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 60500 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 60439 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 60378 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 60317 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 60256 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 60195 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 60134 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 60073 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 60012 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 59951 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 59890 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 59829 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 59768 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 59707 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 59646 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 59585 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 59524 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 59463 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 59402 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 80-1328 **** Predicted by CRISPRDetect 2.4 *** >NZ_NOGM01000062.1 Escherichia coli strain MOD1-EC5142 MOD1-EC5142_62_length_17929_cov_23.1827, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 80 29 100.0 32 ............................. CTCTTCAGCAATGAAATCGTCAAACGAGATTA 141 29 100.0 32 ............................. CACAATTATTCGGTACGACGGGTTCAGGCATT 202 29 100.0 32 ............................. TCACCGGGTCAGATACTGATGTTATGGCTTAT 263 29 100.0 32 ............................. AATGCAGGGCTGGGATCGGGAAAAACAATTTA 324 29 100.0 32 ............................. CTCATCAACCAGAATACGACCCGCCTTTTTGC 385 29 100.0 32 ............................. ATTACGCCGCCTCGCGTTTTTAGTCATTTCTA 446 29 100.0 32 ............................. AGGAGTTTAATTTCCAGATTGAGCGCTGGATA 507 29 100.0 32 ............................. GGCACAAAAAAACCCGCGCACGGCGGGTTAAT 568 29 100.0 32 ............................. ATTACGCCGCCTCGCGTTTTTAGTCATTTCTA 629 29 100.0 32 ............................. AGGAGTTTAATTTCCAGATTGAGCGCTGGATA 690 29 100.0 32 ............................. GGCACAAAAAAACCCGCGCACGGCGGGTTAAT 751 29 100.0 32 ............................. GTGAGTCCGTCAGCGGTGCGCCGCTGCAACAC 812 29 100.0 32 ............................. CTCGATCAGGAAAATGAATTCCTGGAAAAAAA 873 29 100.0 32 ............................. CGTGGTCGGGATTGTTGCGCCAGTCTCCGGGG 934 29 100.0 32 ............................. CACGGCTGGCCATTTGAAATACCTGTTGCTCT 995 29 96.6 32 .T........................... AACAGCGAGCCAACTGGTTTCAGATTGCTGAA 1056 29 96.6 32 .T........................... GCGATCTCGCGGAATACACCGACGAGGCGGGC 1117 29 96.6 32 .T........................... TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 1178 29 96.6 32 ...C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 1239 29 96.6 32 ...C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 1300 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGATG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //