Array 1 20-1879 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYK01000060.1 Salmonella enterica subsp. enterica serovar Wilhelmsburg strain BCW_2822 NODE_60_length_7349_cov_2.43628, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 20 29 100.0 32 ............................. GGAAAAATCAAGTCAGATGCTTCAGCGTTTTC 81 29 100.0 32 ............................. AGGACGAAACGCAACAGGGCGGCGCCGAAACG 142 29 100.0 32 ............................. AAAATAAAATTGATGGTGCGGTTTCCGCAATG 203 29 100.0 32 ............................. GGGCGAGCATGATTGTTGCTTATTCGCGGCTG 264 29 100.0 32 ............................. CGCCTAGGAGAACTTGTGGGCTACTCCCAAGC 325 29 100.0 32 ............................. TGAAGAACGGCCAGCCCGTCGAGGTATCAATC 386 29 100.0 32 ............................. TGATATTTATTGCAGGATTAGGATCGCTTCTA 447 29 100.0 32 ............................. GCGGCGCGACAGGCGTTCCAGCCGCTTACCTC 508 29 100.0 32 ............................. GGCTTGTGAAACGTGCCGGGTTTACGAAAGAA 569 29 100.0 32 ............................. TTAACCGTTCCCCACGTAAGCGGGGATTAGCT 630 29 100.0 32 ............................. GGTTTAAGAAAACCGTACAACAGACAAAATAT 691 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGGCCGTATT 752 29 100.0 32 ............................. AATTTAATGTTTATCCTGGACGCTATGATGTT 813 29 100.0 32 ............................. TGAGTGAAGTCCTTTAAATACCTAAAGATCTG 874 29 100.0 32 ............................. CGGAAGAGGCTGCGGGGCTGATTGCTGACGAG 935 29 100.0 32 ............................. AGTATAAAAAATCCCGTGCAGGGCGTATCAAG 996 29 100.0 32 ............................. ACTATCTCAAAACCGAAAACGACGGGATGGAA 1057 29 100.0 32 ............................. TGAGTTTCCCAGCCCCTGATGCTCTTCTTCAA 1118 29 100.0 32 ............................. GTCATATGCCAGGCCAAGTAGCGCCTCCATCT 1179 29 100.0 32 ............................. AGTCGGAGGCTCTGAGTATAACGCCGAGAACG 1240 29 100.0 32 ............................. AGGGCGCGATCATCATTCAGGATGGCAGATCA 1301 29 100.0 32 ............................. CGCTGGATCGGGAAACGAATATCTGACGCACT 1362 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 1423 29 100.0 32 ............................. TGGTTAAGGTGGTGAAGATGTGGCGTAAGCTC 1484 29 100.0 32 ............................. TGGTTAAGGTGGTGAAGATGTGGCGTAAGCTC 1545 29 100.0 32 ............................. GACGATGTTACCGGTGCTGATGTGCTGGATAC 1606 29 100.0 32 ............................. ATTCAGCCACGTAGACGCGCGCGGGGGCAGGC 1667 29 100.0 32 ............................. GAATTATACGCCGGGAAGAATTAAACCACTGA 1728 29 100.0 32 ............................. ATCGCACACTCTCAAATCAAATGAATGAGATT 1789 29 100.0 32 ............................. CCGCTGAGTGTGTGGAGGATTCGCTAATGCCC 1850 29 96.6 0 ............T................ | A [1877] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGATATTCATCGAGCGCTGG # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 585-7 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYK01000016.1 Salmonella enterica subsp. enterica serovar Wilhelmsburg strain BCW_2822 NODE_16_length_104416_cov_2.74702, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 584 29 100.0 32 ............................. GCTGATTCCCGTGTTTCCGTTCCAGATCACCT 523 29 100.0 32 ............................. TAGGCCGGGTTGATACTATTTAACATCTCTGA 462 29 100.0 32 ............................. GCCGAGGAAGACGAACCGCCAACGCCAAAAGC 401 29 100.0 32 ............................. GCTCGAAACCGTTGTTAAGCCTGAACTGGATA 340 29 100.0 32 ............................. ACACTCGCGGAGCTGAGAACCGCGGCGAGCAG 279 29 100.0 32 ............................. GCGGCACATCCGAGGATGAAAACCTCCAAACC 218 29 100.0 32 ............................. GCCGGACTCAACGGCGAGAACGTCGGGGATTT 157 29 100.0 32 ............................. AGAGGGGGTTATATCGCTATTCATCACGACGA 96 29 100.0 32 ............................. GTTGTGTTTAAGTGGATATTCATCGAGCGCTG 35 29 96.6 0 ...........................A. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACTTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GATCGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 20167-16719 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYK01000016.1 Salmonella enterica subsp. enterica serovar Wilhelmsburg strain BCW_2822 NODE_16_length_104416_cov_2.74702, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 20166 29 100.0 32 ............................. GTCAGAGTTCAACAGGTGGCGAATTATGGTGG 20105 29 100.0 32 ............................. TGTACCGACCCGGCGTCTGGAACGGACAACCA 20044 29 100.0 32 ............................. GCGGCGATTACCCGCGTTCGTGAGCAACTGGA 19983 29 100.0 32 ............................. GCTGAAATACTGCAATTCCCCGAGGGGGTTTA 19922 29 100.0 32 ............................. CTGCAACACCCGTGCTCCCGCTTCCCATAAAT 19861 29 100.0 32 ............................. GCGGTAGGATTGCTCTTCGTGAACGCACGATT 19800 29 96.6 32 ............................T GCGCAGACGGATCTTTCTGCGGTACTGAGCAC 19739 29 100.0 32 ............................. CTACTGGAGCGCGTAAGGCGCTGTTAAAAAAT 19678 29 100.0 33 ............................. GAAAAAACAATACAAAAAAGGGCCACTTTACGC 19616 29 100.0 32 ............................. AAGTGCAACACCTCCATATTGAACACGGCGCT 19555 29 100.0 32 ............................. AGTTTTTCTCCCGGTTCACGTTTTCCGCCATT 19494 29 100.0 32 ............................. TCGTATTTTGGCATCGTGTCGGGAGCGAAAAC 19433 29 100.0 32 ............................. GTGACGTCCCCTTCCTTGCTCATAAAATCCCC 19372 29 100.0 32 ............................. GCTGACGGCGGAGAGCGCCCGACAAATTAAAA 19311 29 100.0 32 ............................. GATAGCGCGGTGCCGTCTGGTTTCTCATATGC 19250 29 100.0 32 ............................. TGTCGTCGCAGCTCTTGACGACGTGGCGCTGT 19189 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 19128 29 96.6 33 ............................C GCACCGTTGCTGGCCTGCACGCGCTGGAATGGC 19066 29 100.0 32 ............................. TTGTTGATTTTGTCGAAGGTCTTGAGCAGTGG 19005 29 100.0 32 ............................. CCTCATCCTTGATCATGTGCTCGGGGAATTCG 18944 29 100.0 32 ............................. GGTCTCAAATGAGAGAGACGCGCAAATGATCA 18883 29 100.0 32 ............................. TGGATGACGAGATGTGCAAACAGGGAATGCCC 18822 29 100.0 32 ............................. AAATTTTACGAATATCTGCGCAATGCTCACGA 18761 29 100.0 32 ............................. CAGATCAATTTAGGACCCGTAATTTTCGCCGC 18700 29 100.0 32 ............................. GCAAACCATTACCAATTCCCAGAACTCCTGGG 18639 29 100.0 32 ............................. TGAAACTTCTTTAGCATCCTCCCGAGGCAGAT 18578 29 100.0 32 ............................. TTTCTGCCGCTACCGCGCTTTCTTTCGCCGCC 18517 29 96.6 32 ............................A TGGACGGGCCGATGCCGGAACAGATGCGAGAC 18456 29 100.0 32 ............................. CCAGCGCCTGATCGCGTCGATATCCAGACACT 18395 29 100.0 32 ............................. CCGTCAATACGTTCGCGCAGGTCAATTGGTGC 18334 29 100.0 32 ............................. CACATAGCGCGATCCGTTCCGAGGGTCTTTTT 18273 29 100.0 32 ............................. TTACGTTCACCGTACTGGTTTTGATAATCAAG 18212 29 100.0 32 ............................. GTTATCACGCAGCGCCACAAAAAGGCGATCCC 18151 29 100.0 32 ............................. ATTTCATCCTCACCCAGCGGCCTGACAATAAA 18090 29 100.0 32 ............................. GATCGTGATTACGCTAAATATTTAATGAGAGG 18029 29 100.0 32 ............................. TCGGCAGAATTAGGCAACCAGGTGTCATGCGC 17968 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 17907 29 100.0 32 ............................. ATACCGCGGACTTATTCCCCTTGCGGGTGTTG 17846 29 100.0 32 ............................. AGTTCGATATATTCCCTGAGAACGTCTGCCCG 17785 29 100.0 32 ............................. CAGGTCATTGAGGCTGTAGCGGCCTTCTGCAT 17724 29 96.6 32 ............................T CCATAATAAACACGTCGCCTGGCTGCGGTTGC 17663 29 100.0 32 ............................. CGTAGCTATACTGATAATTCATCAGCACAGAC 17602 29 100.0 32 ............................. GGCACTCTTCAGGAAAGCAGCGCCTTCAGGGT 17541 29 100.0 32 ............................. ATTTATAAAGGCGTGTTTAATGCCGGTGAAAG 17480 29 100.0 32 ............................. GTGGTGTCCGGTCTGTCGTTCACCCCCGCAGT 17419 29 100.0 32 ............................. ACCGTGTCGCGCATGTTGTCAAACGTGGGAGC 17358 29 100.0 34 ............................. GAAGAGCGTGATCTGCACTACTCGTCTGTGCTGC 17295 29 100.0 32 ............................. CAGTGCACCAATAGCATTACGATTCTGATAAC 17234 29 100.0 32 ............................. CAGCCCGCAGAGATGTTTCAGCGACTTGGTTT 17173 29 100.0 32 ............................. CTCGTAACAACGCCGCCACCCGGTGAATTTTA 17112 29 100.0 32 ............................. ATTCTGTCTCTTTTGTGCGGAGCGCCGACGCC 17051 29 100.0 32 ............................. CGTTGTTAACGGCAGCCTTATCTGCTTTACCA 16990 29 100.0 32 ............................. CAGTTATTTGACAATTGGTACTGGCATTAAAT 16929 29 100.0 32 ............................. TTGCTTATTAATGAGTTTGCGGCGGTGTTAAT 16868 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 16807 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 16746 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================== ================== 57 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGATTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGGTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //