Array 1 44893-46751 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOCH01000017.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R9_3248_R1 NODE_10_length_170585_cov_1.61836_ID_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44893 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 44954 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 45015 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 45076 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 45137 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 45198 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 45259 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 45320 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 45381 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 45442 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 45503 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 45564 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 45625 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 45686 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 45747 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 45808 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 45869 29 100.0 32 ............................. TGACTCTGGTCTATACCGGCAACGAACGCGAC 45930 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 45991 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 46052 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 46113 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 46174 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 46236 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 46297 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 46358 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 46419 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 46480 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 46541 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 46602 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 46663 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 46724 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62863-64217 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOCH01000017.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R9_3248_R1 NODE_10_length_170585_cov_1.61836_ID_21, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 62863 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 62924 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 62986 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 63047 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 63108 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 63169 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 63230 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 63291 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 63352 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 63413 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 63474 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 63536 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 63597 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [63639] 63639 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 63700 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 63761 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 63822 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 63883 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 63944 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 64005 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 64066 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 64127 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 64188 29 96.6 0 A............................ | A [64214] ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.1 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //