Array 1 225564-224208 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGRR01000007.1 Neisseria meningitidis strain NCTC13280, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 225563 36 94.4 30 ........G...A....................... TTCTATTATAAAAGCTGCCTGACTTACTCG 225497 36 100.0 30 .................................... GGCGGATGGCATACGGCGTGCCTTTTCGGT 225431 36 100.0 30 .................................... GAGCATTGACACTATTTGTATGGCGTTAAG 225365 36 100.0 30 .................................... CCGTCACTACACGAACTGGCGGACTTCTTG 225299 36 100.0 30 .................................... AGCATTTGGGCGGCACGGGCAAAGCCGTCA 225233 36 100.0 30 .................................... AATCAGACCGACTTTACAACGAAGGTTTGA 225167 36 100.0 30 .................................... CGACAACAAAGCCGTCTATGACCTGACCGA 225101 36 100.0 30 .................................... TTGGGAGGTGGAAAACCGAATCCTGCACGA 225035 36 100.0 30 .................................... AAGCAAATCATTTTCATAGTCAGCAGCTTC 224969 36 97.2 30 ......................T............. ACGTGAGTTTGTCTATGAGTTCGACGGCGT 224903 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 224837 36 100.0 30 .................................... CTTTCACTTCAGTAATGGCTTCGGCATATA 224771 36 100.0 30 .................................... TAAATTTTTGATTTTGATTTTTTCTATACA 224705 36 100.0 30 .................................... GTGGGAGTTCGTCTATGAATTCGATGGCGT 224639 36 100.0 30 .................................... TTTGCTGCCCGACAATGCGCGTCCGCAGAT 224573 36 100.0 30 .................................... TGAGAAAGATTTAAGAACTAAGTTCCCATC 224507 36 100.0 30 .................................... TTCCAAAGTTTTAATTTATATTATTTTAGT 224441 36 97.2 30 ............................A....... CAGAAGATGATAACTGTGCTGGGGGTGCGT 224375 36 100.0 30 .................................... ACGCAATAACGGCGAGTTTACGCATCAATG 224309 36 100.0 30 .................................... TAACGATTGAAAGTGAGTATGTATTAAGTA 224243 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.5 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGATATTGTGCTAGAAGAAACAGAAAACGAGCAGAACAATGATTTCAGGCTGCCTGAAAATTTAGAACACTTTGATATTCAAATAGAAAATGTTTCTTTTCGCTATGCTGAAAATGAACCATACATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGATTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTGTCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //