Array 1 38020-37131 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZGL01000022.1 Staphylococcus simulans strain SNUC 1337 contig022, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 38019 36 100.0 30 .................................... GTCCTTTCTGGCGAACTAAATGGAAAACGC 37953 36 100.0 30 .................................... AAACCTAATTCTTTTCTGTACTCATCAGCT 37887 36 100.0 29 .................................... ACATTATCGCAGTATGTTAGCTGACGAGC 37822 36 100.0 30 .................................... GTGAGTGTACACAAAGATGAAGATGACATT 37756 36 100.0 30 .................................... AATCATTCTAACGCCACACAGACACGCCCT 37690 36 100.0 30 .................................... AATCATTCTAACGCCACACAGACACGCCCT 37624 36 100.0 29 .................................... TATAACCGATATGCATAGTTGCACGTAAT 37559 36 100.0 29 .................................... AATATAACAACGTGGTTATAAGATCGGCA 37494 36 100.0 29 .................................... CCTGCGAAATATTGATAACCACGTCACAA 37429 36 100.0 30 .................................... GCGTGGTAAGTGTCGACTATCGACCTAACG 37363 36 100.0 30 .................................... TTTTCTATTTGCCGCTGCCCTTTTCTTATC 37297 36 100.0 29 .................................... AGGCGTGTTTGAATACGACGATCCGAGAA 37232 36 100.0 30 .................................... AAGTTCTTGCATTATGTTCAGAACATCATA 37166 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 100.0 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC # Left flank : ATTATCAAGCAAAAGAAAAGGCGTTTTTGATTTATCTGTATCCAGAAGCGGGTTTAAGTATAAAAGAGCAAATTAGATTTAGAAAAACATTAAATGATCTGCCAATTCCAATAATAGTATTAACAGAGTCCTCATATTTTTTATCAGAGAATATCAAAGGTTTGAACTACTTTATCAACAATATCCAAATGATTACTGAAGAGTTTATTGATGATAGTTACTGGAATGCGCCAATTAATATAGAAATAGAAAAGTTTAAAGAGAGATTTGAGTATTTGTTTAAAAAATATTGTTCTTTTCTAGAAGTTAATCCTACAATTTCTAATTATAATTTGACGGAAATTGTTGTTTTCGATGATTTGGATCTTTATATAGTCATAGCTTTTTTAAAACATTGCAAATTTAACTATCAACTAGACATTGATAGGGAGAAAATTTCTTCAGCATTATCAGTGTATCTATTTTCTTAACCATAATTCAAGTTTATAATTGTGCTAGAG # Right flank : ACTAACCCAAAAGGAACTTGAACTGCACCTGTTTTAGTACTCTGTAATTTTTAAGCAGCTTCGGCTGCTTTTTTCTATTTTCTGTCATTGACATACTTTAATGATAGGCATACAATAATTCTGAAAATTACGAAAACATCAGGTCTTTTGCATCACGAGAGGAGTCTTTTTATGGAACACACAGCGATGGATCATACTTCACCCACACATCCAGGGACTAAGATAGGTCCCAAATATTTTCTTTTTAACTTATTAAATGGGGTTGCGATTGGTATCGTAGCAGGTTTAATCCCGAATGCGATTTTAGGAGAAATTTTAAAAGCACTTGTCCCATTCAATCCAGTCTTTACACAATTACTACACATTACGACGGCTATTCAATTTGCGGTGCCTTGTTTAATCGGTGCGTTAGTTGCGTATCGTTTTAAATTTACACCTTTAGGTATCGCGGTAGTTTCAGCGGCTTCCTTTATCGGTAGTGGTGCTGTCGTCTTTAAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 16974-16283 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZGL01000039.1 Staphylococcus simulans strain SNUC 1337 contig039, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 16973 36 100.0 30 .................................... GCAGCAAGACAAGCAATGACGAAACATCAG 16907 36 100.0 29 .................................... CAATTAAATTATAAAAAAGGGCAGAAAAA 16842 36 100.0 30 .................................... GTTGGAGGAAGTCGGAAAAATTGTTGGTGT 16776 36 100.0 30 .................................... CAAAGCAAGAATTAAAGGAGAAAAACATCA 16710 36 100.0 29 .................................... AAACGTTATCAACACATTCGTAGGGTTTT 16645 36 100.0 30 .................................... AAAAGAAAACGGCAATGCTGGCGTTGTGGG 16579 36 100.0 30 .................................... TGAGATGATTTGAGAACCATTTAAGCCTTT 16513 36 100.0 29 .................................... TTTAATAACTATCGTTTAATAACTATCGT 16448 36 100.0 29 .................................... CTTTACGTGCTTTTCTCCACGCACACATC 16383 36 100.0 29 .................................... TATCCAAATCATAGCTACATGCTCTTAAA 16318 36 88.9 0 ............................TT....CA | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 99.0 30 GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC # Left flank : AAATAATAAAACGACGATTA # Right flank : AGCGGGTATAACTTAACTATTTATCGTGCTTGTTTGAATGGAAAAATCTTTATATTTGTTTTGGAAATGTCTTTGACTTTTCATCTATCTGTGTTAAACTTAGTACAGTTTAATAAAGAAATCGTAAGTCTTTAATTGAGAGTACAGAGATGCTCCGAAGGCAGATAATTTACATGTTGAAACTAGAGAAAGTAACTAAGTAAACACTTTATTAAGAGGTAATTTTGTATGAACACGCAATTCACCAACCCTGATTGCCATACAAATTTAGTAAAGTAACCGACAAAACAGTTACTGATTTAAATAGTTGAGATAGTAAATCTCGCATGTTCTTCGTGTCCCGTGTCTCTCAATTGAGATACGGGATTTTTTTATGGAAAGGTGAGTGCGGGAATGACAGAACGTATTGTATTAGATGATGCAGGCATGCAGCGGACTTTAACACGTATCGCACATGAAATTCTAGAGTATAACAAAGGTACTGAAAATCTTGTGTTGCT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAATTGTGATCTTTTAGAATGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //