Array 1 85389-85057 **** Predicted by CRISPRDetect 2.4 *** >NZ_AUIF01000047.1 Runella zeae DSM 19591 G563DRAFT_scaffold00032.32_C, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 85388 37 100.0 37 ..................................... TCGTCTACTACATGTTTCCAATTCCCCCTAAGAAGTT 85314 37 100.0 36 ..................................... CGCATTTGCCCCCGCTGCGCCTTGCGCTCCCGTCGC 85241 37 100.0 37 ..................................... AGTTTTTCCCGTAAACTTTCTCATTAAACCTAGACTC 85167 37 100.0 37 ..................................... TCACGTAGTGGAGAGTCAAGATAGAGAAGCCTACCAG 85093 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 99.5 37 CTTTCTGAGTGACTTCCAGTAAGATATGGATTGAAAT # Left flank : | # Right flank : AAATGTAGCATCGTTGCAGTGCAACGATGCTACTGTAACGATGCTATTTTATATTTTTAATTTTACTTGTAGACGGCCAAGCAAAGTCGCAATCCCGACAATCAATAGCGAAAACAAAAATGATTTTATCAACCCTATGCCTCCAGATGTCAAAAAGGAAGGTAAACCAAAAGGTATAAAACTTACTACACTATAGTATACATACGGAAGTACATAGCAGGTAAGAGTACTGGTGCCAGCAGTTCGGATAAACTGAAACCAACGCCCTTTATCTTGTAAATCTAACAAAAAAAATAGCGAAGCATAAAGAATAAACGCAATGCCGCTACACAAGAAAACCCAAGTAGGAGTGGCTTGGATTTTGGAAATTATAAAAAAGTTGTGCAGCAAAATGCCAATAACAATAAGTCCAATTCCGATGATGGTAAACACCGAAGGTATTTGTATTTTTCGGTTTTTTGCCTGAAACCATTCCAATAATAAAGTGGCCATAATGCCCA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCTGAGTGACTTCCAGTAAGATATGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 213345-212383 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE384039.1 Runella zeae DSM 19591 G563DRAFT_scaffold00007.7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 213344 30 100.0 37 .............................. AACCCACGTAACTGTTTTGCCGTTTTGAGTAACCCTC 213277 30 100.0 37 .............................. TACATCATTCACCGATGTGTAGAAGTTCACAGATTCC 213210 30 100.0 38 .............................. AAGGCGACGGTTCGACCGACGATTATACTGCTATTCAA 213142 30 100.0 35 .............................. AAAATGATTGTAGGAATATCTATTGTGTTAACTGC 213077 30 100.0 35 .............................. AAGGATTATAACGAAGACAATCTAAAAGAGACAAT 213012 30 100.0 37 .............................. GAGCAAGGAGAATAGAGACAAGCTAAACGGAGTGATT 212945 30 100.0 37 .............................. AAGGTTAGCTTGCCTTCGCCCAGTGTTTCGTAATTGA 212878 30 100.0 36 .............................. AAGCCTGACTTATACGCGGCAATGCGACTTGAGCCA 212812 30 100.0 37 .............................. ATGCCCAAATGTAACGGCAGGATATTACAAACTAAAG 212745 30 100.0 35 .............................. TAGGCTTGGCAACGTCTGCGTATTACGCTTACAGG 212680 30 100.0 35 .............................. GTTCTGAGCTGTACACTCTACAAAAAACACCAGAT 212615 30 100.0 38 .............................. ATTGCAGATTTGGCCACGATGTAATTATTTTTTAAAAA 212547 30 100.0 38 .............................. ATTGCAGATTTGGCCACGATGTAATTATTTTTTAAAAA 212479 30 100.0 37 .............................. ATGACCCCTTAGAGCAGCGCGACTATGAGCGAGACCG 212412 30 90.0 0 ........................CT.C.. | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 99.3 37 GCTTTAATCGTACCATTTAGGAATTGAAAC # Left flank : TGTTTAGGGGGTGAAAATACCGAATCTCATTTTGCTCAATCTGGCCCCATGACCGAAACAGTGCTGTTGGGGACAGTAGCGATACGAGTTCCTGGGCAGCTTTTGGAATGGGACGCAAAAAAAATGAAATTCCCCAATTATCCAGAAGCAGAGAAGTTTCTCCGTCGGCAGTATCGATCGGGCTGGGAAATCGCCAGCCTATGATTGTAGAACAAGTAGCAAAGATACCTGCACGGATACTTTCTACTTGTTCTACAATTTGATTATTTTTACGTTGACTGTCTTCCCTTCGACGCATCTACAAGTCGTCGCAGGAGGGAACTTGGGCTTGTTCATTGACATATTTTTTTCAAAAAGGGCAATAAAACTAGGTAAGTAATTGATAATGAGCAGTCGTCGAAGGTCAGGCGAAATCCAGTTATTGGCCTTCGACGATTTTTTAGTTGATAAAACCGATAAAAAACCTTAAAATTATGCCAAAATCGCTGTTTTTGCGACGG # Right flank : TTCGGCTACTACAAATGTACTTCCGCCTATATAAATAAAATCACCTTTTTTGGCCCGTCTTTTTGCCTCAGAAACCGCCTCTTGAACTGAGTCGTAGATTTCCCCCTCTAACCCTTCTTTTTGCGCTAACGCAGCCAAATCGGCAGCAGCTAACGAGCGCGGTAAATCGGCAGCACAAAAATAATAGTAGGCTTCTTTCGGAAATAAACGCAAAATGCTACTAATATCTTTGTCTTTCACAAAACCCAATACCATGTGCAGATTTTCAAATGCATAACTGTTGATTTGGGTCATGGTTTCACTAAGTCCACTATAGTTATGAGCTACATCGGCTACAATCGTGGGCTGATGCCCCAATATTTGCCATCTGCCTTTGAGTTGACTCAATTTGGCCGCATCTGCTAAACCTTTCTTTAACGCTTCGTCTGAAATATGATACCCGATTTGATTCAAAACCACAACAGATTGTAAAACCCCAAGAATATTTTTAGATTGATACC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAATCGTACCATTTAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 2 266100-264113 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE384039.1 Runella zeae DSM 19591 G563DRAFT_scaffold00007.7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================================================= ================== 266099 30 100.0 36 .............................. AGTGGTGCGGCTACTGCATAGTAGGAGGCAATTTCT 266033 30 100.0 36 .............................. GTGAAAACAATTACGTGCGATTTCCAGAAAAAAAGG 265967 30 100.0 37 .............................. GACATCTCAAGCGGCACCACCTGCGATTGTACATAGT 265900 30 100.0 71 .............................. AAATAGAAACCAATCCACAAATCCAAAGCAACAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT 265799 30 100.0 35 .............................. AAATAGAAACCAATCCACAAATCCAAAGCAACAAA 265734 30 100.0 36 .............................. ATTGCTGCTTAGTCATAGCTTCACGAATAGTGGGCA 265668 30 100.0 36 .............................. GTGAAAACAATTACGTGCGATTTCCAGAAGTGGGCA 265602 30 100.0 37 .............................. AATAAAGTATGGGTTGGTACCAAGGAGTGGCGTGACT 265535 30 100.0 36 .............................. TTTTCTAAAGCATGTATTGAATGTACCGAAAAAAAG 265469 30 100.0 36 .............................. ATGGTGAAAACTTCAATTTCACCTTGCGTTTTTTTT 265403 30 100.0 35 .............................. GCTCCTCCGTGTCTTCAGTTTCTTCCTTAGCGGTT 265338 30 100.0 36 .............................. AAATCAGGAATACAACTTTCGAGGAGGCTATGTAGG 265272 30 100.0 37 .............................. AAGGCACTTGCTTCTTATTCGTGGAAAAGTAGGCTAG 265205 30 100.0 37 .............................. ATTGGTATGTCTCAGTCTAACTACAACATGGCTATTA 265138 30 100.0 35 .............................. AGCTCAAACTCGTAAAACTCTAAGCTTTCAGGCAT 265073 30 100.0 35 .............................. ATAGCTAATTCATAACAATGAAAGATTTTCAATTA 265008 30 100.0 37 .............................. ATTCACCCACGATTCGGCTGTCCTATGTAGATGCTTC 264941 30 100.0 36 .............................. ATTGCGACGGACAGTTTTGGCTAGTCAAAAACGAGG 264875 30 100.0 37 .............................. AACTTGCAAACTATTTCGCGCTTATCGCCCGAGTAGA 264808 30 100.0 37 .............................. CAAGAAAAGGCAGTTGCCTTGCAAAATCAATTTTCGG 264741 30 100.0 36 .............................. CTCCCTAGGTACGGCGTGGTGCAAGGCCACTATTTC 264675 30 100.0 39 .............................. GTAGAGCTTGCGCAAAGGCTACTCCCCACCCCACAAACT 264606 30 100.0 36 .............................. AGTGCTTTCGCGCAACTTAGCTGTGTTTCGTATTTT 264540 30 100.0 36 .............................. GATCGTAATCGAATAAGCTTTTTGCGTTCTCAAGGA 264474 30 100.0 37 .............................. AGGCTGTCAATTCCTCCCCTTCGACATCTACCGTAGT 264407 30 100.0 37 .............................. ACGAAGAGGCAGAGGCTAGAAGGAAGGCCGAAGAAGA 264340 30 100.0 35 .............................. AGGTTTAACATCCTCTAAAAATAGCCCATATCTAG 264275 30 100.0 36 .............................. AGGCAACCCTAAGCTTGTATAATCTATCTGCCTTAT 264209 30 96.7 36 .............................T CGGTTTAAGCGGCTGCGGTGTCCTGTGCTATGTATC 264143 30 96.7 0 .............................G | G [264125] ========== ====== ====== ====== ============================== ======================================================================= ================== 30 30 99.8 37 CTTTTAATTGTACCATTTAGGAATTGAAAC # Left flank : ATA # Right flank : ATTTTGGTGGTGAGTGAATTTGTGGGAAGAAAAAAGAGTTAACCAAGAAACCCCCAATCTCTTTACATGAAAACTTTAGCCGATTTGTTGTTGTTGGGCGACCCACGTTTGTACCAAAACTGTGAGCCTATATTGCCTACTGAAAAACACTTGGTGGGCGGTTGGGTCGCAGATCTTCACAATGTGATGCAAGAGGTACGCGCTAAATATGGCTTCGGAAGAGCTATCGCCGCGCCTCAACTTGGTATTATGAAACGGCTCATTTATATGAATATTGACCAGCCTGTGGTCTTTATCAATCCTACGCTTACTGATTTAAGTGACGAACTTTTCGAGCTTTGGGACGATTGCATGAGCTTTCCCAATTTGTTGGTGAAAGTCAAAAGATACCAATCAATTACTGTCCACTATCTTGACCAACACTGGCAGCCCCAAAGCTGGACTATGCACGATAGCCTCGCTGAATTGCTGCAACATGAGTATGATCATCTCAACGGAGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATTGTACCATTTAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //