Array 1 88840-88365 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKYB010000015.1 Streptomyces acididurans strain KK5PA1 NODE_15_length_225313_cov_37.567651, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 88839 37 70.3 35 T...T.AC..G..C....C.T..TC..A......... TCCTCACTGGGGCGCGGAGCGCAGGGGGTAGTGGG 88767 37 83.8 37 .C.....C..C..AA.......T.............. ACCTTGGTGACGCACGTATCGACCACGGTCAGCGGAT 88693 37 89.2 36 T............G.G...............A..... GAGTGGCTTTAGGATCACCTCGTTGGGCACTCGGTT 88620 37 91.9 37 ..T....C.......A..................... GCTGCCGCGTGCCGGATCGAGTACGGCACCGATCCGG 88546 37 100.0 36 ..................................... CTCGGCGGCCCCTGGGGTGTCGCCTTCGGCGCGGCC 88473 37 91.9 36 .......CTC........................... TGGTATCCGTCGTGCCAGCACACCCCCGCTCACGGG 88400 36 64.9 0 TG.CTGCCG...T..C...G...........T-.... | ========== ====== ====== ====== ===================================== ===================================== ================== 7 37 84.6 36 GTGGCCGGCGTCCTCTGGGACGGCGGAGGATCGCAAC # Left flank : AGCGAAGCCCGCCACCGCTTCGGCAAGAACATGGCAGACCCCGACAATCTCGAAGCCCTCGCCGAGTACTACGCCGCCCGCTACAGCGCCCAAGCCGGATCGCACACCACCGATACTGCGGGCGGTCTCGGCGAACCTATTGAAAAGCTACGCACCCAGCTCCACTTCCCTGCCGTAGCCGAAAACTTCCAGATGATCAACGACCGGACAGTGTCAGTCGTTGTCCTCGGCGACCAACTCGACTCGCAAACCCGCGCCCAAGCGCAAGCGGCGATCGACCTCCTACGCAGCGGCCAACCCACCGGCCCGGAAACCCTCCGCACCCTCCAACCTCACACAGCCAACATCCCCTCCAAAGAAGCCGACACCGCCCTGGCCAACCGCCACGCCACTACGATCACCGACGACCTGCTCCAATGGACCGGGGCCTACCACCACCGCCGCGGCATCGAACCGCCGTTCTCGGCACAGGCACATTGATGCCTCGTTTCGGGTAACGG # Right flank : GCCCGACCACAGCGTCGGCGTCGATCGCTTACAGATTCCTCTTGCCAACGGCTTCCGCTATCACGAGAAAGCAGTTTCACCAAATCCCGCGTTCTCTGGATTCTGATCGTGCTCGCCAATCGTCACACGTGTGCCCTTTCGACGTGACATGCGAGAGGACGAATCGCCCGCTGCTCAGACAGCGCTGAACAGGAGACACGCGATGCGCAATGCGCCCAAGCCTGCCGTGGAGGCTGCGTTCCTGAACGCTCAGAACGCCGCAACGTACATGGGGATCTCGGTGAACACCCTGTACGTCTGGCGTCACCGACGGCAGGGTCCTCCCAGTTTCCGGATGGGGCCGGGCGGCAGGCTGATGTATCGCCGAGACCTGCTCGATGCATGGCTCAGTGAACAGGAGCAGGCAGACTCGCGATCGAATCCGATCCTCAACCCGTTGAATCGGGCGCCGCGACAGCGGGAGCGGCGCCGTGCTTGCTGAGCTGCGGGAACAACCTTGA # Questionable array : NO Score: 3.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.23, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCCGGCGTCCTCTGGGACGGCGGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGACGGTCGCCCTCCGGGGCGGCCGAGGATCGCAAC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [5-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 96753-97269 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKYB010000015.1 Streptomyces acididurans strain KK5PA1 NODE_15_length_225313_cov_37.567651, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96753 29 96.6 32 .....................A....... GTCGTCAACACCCTCCTCACCACCCAGATCGA 96814 29 100.0 32 ............................. TTCCTTGGTGACGCCTTCAGGATTGCTGCGAC 96875 29 96.6 32 ........................A.... CCGTCGGCTCCGGTCGTCGGGTCCAGGTCGTC 96936 29 100.0 32 ............................. TCGACCGGGCTGCTCACGCCCGCACTGACGAA 96997 29 100.0 32 ............................. AGGACTGGCGAGCGGCCCAGCTCGCCGGTTAC 97058 29 100.0 32 ............................. GTGCTGCCGCGCGGACCGGAACTCTGGGACCC 97119 29 100.0 32 ............................. ACCCTGCTGGCCCAGGGCATGACGCTGCCGCA 97180 29 100.0 32 ............................. GATGGAAGGGCGGGAGGGGCGCGATCCCGGAG 97241 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GTTCTCCCCGCGCAGGCGGGGGTGGTCCG # Left flank : ATGCACTCCCCCGTGCTCCGACCCAGGCTTCGGTGAAGCCGTCCTCGGGATTCGAATCCGAGACCTACGCATTACGAGTACGCGGGCGATTATGCTGCCCTGTGCCGTGCAGAGCTGTCAGATCGCGTTTGACCCGGCCAGAAGGCACGTCCCATCCCTGTCCATGATGCCCGGTACTGCCACGTTCGAAGACGTCCGCGCTCCCCACGCGCTCCCCTGAACTCCGCGGCTGCCCGGCGACGCAGGCAAACGAGGCATGCCCGCACGGCGGTTCGGCCAGCGGCAGCGGAGTCGCACCCAACCCCCTAGAAGACGACCCGGCGCCGACCTTCGCGAAGTCACCCGTAGTTGTCTTCTGCAGGGCGCCTATGTACGACTTCCACAAAGCCAACGGCCGCACGACCTGCCGCGCGTTAACGTCTGCCAAACTGGCCCCATGAGCCAGCGGCAACCAAGTCAAGGAGTTGCAAAGCTCCTCGAAAAGCGCAGGTCGTAAAGGG # Right flank : ATCATCGACCGCGCCCTGGCCATCCAGGCCCTGGCCGGCCGCCGCGTACGGATCCTCACCTACGACACCGGGCAGGCCACCCGCGCCCGCACCGCAGGTCTGCCCGTCACCAAACTCCGGGACGACGTAGGAACCGGCGACGAACCCGACTGGGCCGCACTCGACGTAGCGCAGAACCGGGGAACCGGAGGTACCCGGCAGGCCCGCCGGCAAAAGGGCGCCGAACCCGCGGCGGGGCCAGCAGAAGATCAGAAGGAGACACCCGGGCCCGGGCCCCAAGCGTGAGCACTCCCGCCGAGTCGGTAGTCTCCGCGCCATGGCAACCGGACTGTGCATCGCGGCCGCGGCCATCACCGCCGCCGAGATCGAACGCCTCGACAATCTGCCCGACGCCGCCAACGAGACGGTGGACGCGGACGGGTGCCAGTTCAAGGCCGGCCACACCGGGCGCCACGCCTGGCTCGCCCAGGTTCAGGACGGCGGCGAGAACACCACCGGTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCAGGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCAGGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 103992-104386 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKYB010000015.1 Streptomyces acididurans strain KK5PA1 NODE_15_length_225313_cov_37.567651, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 103992 29 100.0 32 ............................. CCCCGCCTGGCCTGGCTGGTGCGCCACGTCGC 104053 29 100.0 32 ............................. TCCCGCATGTCGACGTCGCGGAACCGCAGTCT 104114 29 100.0 32 ............................. GCCAAGCACCGCAAGCCCGCTGGCGCCGCGGG 104175 29 100.0 32 ............................. GGTGTTCCACGGGCCGTTCGCCATGTAGGCGA 104236 29 100.0 32 ............................. ACGAACGCACGCCGCATGTAGGCCGCGTTGGA 104297 29 100.0 32 ............................. GCGCAGCTCAGGCAGATCTGGCACCACCGCGA 104358 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTTCTCCCCGCGCAGGCGGGGGTGGTCCG # Left flank : CCTCAGCGATGAGTGAGCCGGTCACACCTGACGACCCACCACGGCCGCTGCCCGCGACCGTGAATACTGGCCCCATGAGCAGCGAGCGATGGATCGCACCCCGGCCCGGCTGGTACCGCGTGATGGGCGTCGGCGAACCGGTCTTCGCCGGCGAGGAGCCGCCCGTAGCCGACAGGCCGGAGCACCTGGTGCGCTTCGATGCCACGGCCGCCGATCCCGTCCCTTGCCGGAACTGCCACAGCGCGTACGACCCGACCGACCCGGCCGCGGTCACCCAGCACACGGAGCCCGTCGACTGCGGCCAGTCGTGCCGGTGCCGTGACCGGCCGGCCTGCTACACATGCTTCGGATCCTTCTGCTTCTGCATGGCGCACTGACCGGCCCGGTATCGTGCCGCCCAGGGAATGCGTAGCTCAGCTTGGCAGAGCGCTCGGCGCCCGGGCCGCCCGTGGGCGGGCCCGCTAGAAGGAGAGGCCGCGGGTTCAAATCCCGTCGCGTTC # Right flank : GACGGAGCGCGACTACGGGTACGCCGTCACGACGGAGTTCTACCCCCGCGTGGGGCGCCAAGCCGATGAGCCAGAAGTCCCACTGCGGACCTTGCCCGCCTGCGGTTGGCAGTTGGGGAGCGTGGTCAGTGGTCGGCAGGTCCCAAAGGTGGGGGTTGTTCGTCTTGGGGGCGGAAGGCGATGAGGGTGAGGCCGTCGAAGTCGAGGGGGGTGCGGCGGCGGTCGCCGGCGGTGTGGAGGGTGAAGCCCTGTTCGTTGGCTTCGGGGTGGATGAGTACCGCGGCGCCGGGGCCGATGGAGGCGGAGACGACCGCCCAGAGTTCGGTACGGACGCGGGCGGAGAGGGTGCCGACGTAGAGGCCGGGGGTGGGTTCGATCATCCAGCGGGTGAGGGCGCCGCGTACGTGGTCGGGGACTGCGGTGGTGGCCAGGACGGTCATGGTCGGCATGGTCGCTCTGCCCTTTCGGCTGTCGCGCCGTTGGAACGCGGGGCCTGGTCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCAGGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCAGGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 114928-117580 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKYB010000015.1 Streptomyces acididurans strain KK5PA1 NODE_15_length_225313_cov_37.567651, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 114928 29 100.0 32 ............................. TAGTCCGTGGTGCCGTTGCAGGCGGCCACGGC 114989 29 96.6 32 ............................A CCGCGACCGGTGGCCGGCTGATGGCCTGGGCA 115050 29 100.0 32 ............................. TGGGCGAAGTGCTCGACAAGGCCGTCGGTGAA 115111 29 100.0 32 ............................. CAGGTTCGGACCGCGCTGCTTCAACACCTTGA 115172 29 100.0 32 ............................. GCGCTGAGTATCGGGGGCGCGATCGTCACTGT 115233 29 100.0 32 ............................. ACGCGCCGGGAAGTGTGGGTGACCGTCGATCC 115294 29 100.0 32 ............................. CCGGTGGGACACCATCGCGGGGTGGCTCTCGC 115355 29 100.0 32 ............................. CTCCTTCCACAGGCGTTCGACGGTGATCGAGG G [115377] 115417 29 100.0 32 ............................. AAGGGGCCGGTACCGACCCCGGAGGAGCTGGA 115478 29 100.0 32 ............................. CCGTGGATGGCGCCGAAGCTCGTGCCGATGCT 115539 29 100.0 32 ............................. TATTCCGTTCCACTCGGTGCGGACGGTCAGAT 115600 29 100.0 32 ............................. TGCGCCACGGGGAAGCGGGATTGGGCGGCAGG 115661 29 100.0 32 ............................. CCGCCACGGCCATGGCCCGCTCCCACGCCGTC 115722 29 100.0 32 ............................. CCCGGCAGCGTGCTCTACGGCACGGCCGAGAT 115783 29 100.0 32 ............................. CGACGCGCGAACGCCAAGGTGCGCGAGTACCA 115844 29 100.0 32 ............................. TTGCGGGGGGACGGCGGGTGCGTGCCGTTGCG 115905 29 96.6 32 ............................C AATGGGCGGACTGAGCCCGTGCCCACCACGAC 115966 29 100.0 32 ............................. CGGCTGCTGGGGGCGTAGATACGATCCGTCAC 116027 29 96.6 32 ............................C GGGGTGGGTGTGCGGCATCGCGCCGTTCTCGC 116088 29 100.0 32 ............................. GCACGCAGCCGCTGTCGTATCTGGCGCCGGAG 116149 29 100.0 32 ............................. CAGGCCGCCCTCGCGCTGGCCGTGATGCGTGC 116210 29 100.0 32 ............................. CCGATCGCGTCCATCTCGTTCCGGGCCTGGAC 116271 29 100.0 32 ............................. TGAACGAACTCGAACGACTAGGGCGGCAACTG 116332 29 100.0 32 ............................. GCGATCGCCGCGGCCGTGCCCCGGTCGCTCCA 116393 29 100.0 32 ............................. GTGATCGCGTCCACGGTTGCGGCCGCCGCGGC 116454 29 100.0 32 ............................. CGGCAGGCCGCCGAACTCGGCCGTATCCGCAC 116515 29 100.0 32 ............................. GTGACTGGACCGTAACCGTGATAAACGGTCCG 116576 29 100.0 32 ............................. CAGCTTGTTCACGGACACCTGATGCGGTCCTT 116637 29 100.0 32 ............................. TCGCGCGGGGTGGGGGGCTCGGTGGACGTGGC 116698 29 100.0 32 ............................. GTGCCGATCATCCTCGGCATCGACGACCGCTA 116759 29 100.0 32 ............................. AGTCGCACGGGATCCTGCGGCCCAACGACGAA 116820 29 100.0 32 ............................. GCGGCGCAGGCCGCCTATCGCCCTGGGCTCAT 116881 29 100.0 32 ............................. GCGGCGCAGGCCGCCTATCGCCCTGGGCTCAT 116942 29 100.0 32 ............................. CCGCGGCTGCTGCCTGACGCGCGGGCACGGGA 117003 29 100.0 32 ............................. TGCACTTCATCTCCGTCGTTGTCCGGGTGCGT 117064 29 100.0 32 ............................. CTGCCGAGGGCCTTGCCGATCGCGTCCATCTC 117125 29 100.0 32 ............................. TATTCCGTTCCACTCGGTGCGGACGGTCAGAT 117186 29 100.0 32 ............................. TCGGCAACTACACCGCCAACGTCTCCCCGATG 117247 29 100.0 32 ............................. GTGCCGGACGGGGCCCGGGTCGTCGGGCACGC 117308 29 100.0 32 ............................. CCGGCCTGCGGGGCCGTGGTGACCACGCTGGC 117369 29 100.0 32 ............................. CCGCCACGGCCATGGCCCGCTCCCACGCCGTC 117430 29 100.0 32 ............................. CGGCACGCCCAGATGCGGTCGCTGCTCCGTCA 117491 29 100.0 32 ............................. GACGCGGCCCGCCGGTTGATGAACGGCTGTCA 117552 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 44 29 99.8 32 GTTCTCCCCGCGCAGGCGGGGGTGGTCCG # Left flank : CAGCACCCGGGCACCCGCCACCTGATGCCCCAACACGGTGGCTCCGCTGTCCCCCACCACGCGTCCAGCGAAGGCCCCGTCCGCCAACAGCGCCGCGCATGACCCGTGCCGGAGCGCATCGCGCTGAAACTGGAAGCCCGGCTGGATCTTCCCCACGTCGTGCAACCCGGCCCAGAACGAGACCATCGACCGCGCCTCCTCCGGCCGGACCCCTAACTCCCCCGCGATCGCTGCCTGTTGCGACTCCGCCAGAAACCCGTCCCACAACGCCCCCGCCACCACCCCCGTATCCACCAGATGCCCGATCAGCGGATACGGCTCCACCAGCCCGCGCTCCTTACCCCACACCCGAACATCGACCATCTCTCCCCCTCAACCCCAGACCGCCCTCGGCCAGACCCGGGTATTCCACCACCTGCCTCTGACACACTGACCGCATGCACCAGCGGCGGCCCAGTCAAGCAATTGCAAAGCCCCTCCAAACCCGCAGGTCGTGAAGT # Right flank : GTTCTTCGGAGTGCCCAGCGCTATCGTCACGGCCGAATCCAGCCAGAGAAAAGGTCCATCGTCCCTCCTCGGGGGAATATCCAGTGTTCCCCACAGATTCGTTGCTGCATGGCAGGTGGGGAGGTGGAGCACGTGACCGAGCTGAAGGTCTTCCGGCTGGGCGCCGACGAGCGGGATGTCGAGGTTCCGGGGTCGTCGGCGGCGCTGGAGGTGGAGCTGCAGCGTCGGGTCGAGGCCGGGATGGAGGCGATGCTGGGGGTGCGGTTCCTGGCGTCGGAGTATCCGACAGGGCCGTGGCACCGGGGGCGGATCGATTCGCTGGGGCTGGACGAGAACGGCAGTCCGGTGGTCGTGGAGTACAAGAAAGGCGCCGACAGCGGGGTCCTGTCGCAGGCCGTGTCGTACCTGACCTGGCTGTGCTCGGCGCGCTTCGAGTTCGAGGCGCTGGTCGAGGAGAAGCTAGGCGCGCAGACAGCCAGATCGGTCGACTGGCGCAGCCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCAGGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCAGGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 190612-188160 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADKYB010000015.1 Streptomyces acididurans strain KK5PA1 NODE_15_length_225313_cov_37.567651, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 190611 37 97.3 38 .........................A........... CAGATCCTCGCGTCCAACCTGGCCGAGTGGTCCCAGGA 190536 37 100.0 35 ..................................... GACGTAGTTCAGCGACTCCTGGCGGGCCGGTCCGT 190464 37 100.0 35 ..................................... AATCCCGTCCCCGGCACCCCGCACCCACCCCACCC 190392 37 100.0 36 ..................................... ATCGAGCCGACCGGCTACGGCGAGAAGATCATCCGC 190319 37 100.0 35 ..................................... CAGCCGCAGGACGCCACCGAATCCGTTGCCGAGGC 190247 37 100.0 37 ..................................... AACGCCTCCTGCAACGGCCGCGCGGACGGCGACGAGC 190173 37 100.0 36 ..................................... GCTGCGTCGCAATACGCGTTGTGTGACACGCATCGC 190100 37 100.0 37 ..................................... ATCGTGCCGCACGCCCGGTGGGCGAACGGCCAGGCGC 190026 37 100.0 39 ..................................... ACAGGGGCATCCAGGTCATCGGCGGCCAGAGCCGCCGGG 189950 37 100.0 36 ..................................... CCCGGAGCAGCCCACGGGCATGTCGGTGATCTCCTA 189877 37 100.0 36 ..................................... TCCACAACGCTGACTGCGGTGCCGCCGATGACCCTG 189804 37 100.0 36 ..................................... GCCGACATGCCCCGGCCCACCGTGCACGCCCCGCGG 189731 37 100.0 36 ..................................... ACGTACAGCAGGTTGTCGCGGTGCGTGGAGGTCAGC 189658 37 100.0 37 ..................................... ACAGAGCAGGACGTCCCGGAGGTCCCGCAGGACCCAG 189584 37 100.0 36 ..................................... GCGTACGACCACCTGCCCCCGCACCTCCAGGCCGTC 189511 37 100.0 36 ..................................... AATGCAGCGAGCGACCCGCAGGGCCAGGTCCCGCCG 189438 37 100.0 36 ..................................... AGGCCCACGGAGTGGCCGTACTGGATGGCATGCCTG 189365 37 100.0 37 ..................................... TCTGCGCTCATGGCGCCGAGCGGCGGCGTACGTACCG 189291 37 100.0 37 ..................................... CGCCTCGACCGCATCCAGGCCTACAGCGTCCACCGCA 189217 37 100.0 37 ..................................... AGCAACGCCGCCACGAAGTGCGACCACGGCAACCGGG 189143 37 100.0 37 ..................................... CTTGCCTACGGGTACGAGGTACGGCGGACAGCCGCAG 189069 37 100.0 36 ..................................... ACCAGCTGGGACCACGCCGTCGACGAGACCCTGCCG 188996 37 91.9 36 .......C......C.......G.............. CCGCAGACGTGGGACATGCAGGGCACCTACGGGCTC 188923 37 91.9 35 .......C......C.......G.............. CCGAACGGTGCGCACGACGACCAGGTCGACGCCAC 188851 37 91.9 36 .......C......C.......G.............. TACATCTTGTCGTTACCCGAGACTATGCGTGTCCAT 188778 37 91.9 38 .......C......C..............C....... CCGTTGCCGGTAGGCGCGAGCAGCGTCACGTGCTCCCG 188703 36 89.2 37 .......C..T.........T.-.............. GTCGACTTCGGCTACTACCTGATTGGTGACCGGCAGG G [188685] 188629 36 83.8 35 A...G..C.......G...-..G.............. TGGCACTTCGCCGACGCACCCACCGATCGCTCGAT TT [188619] 188556 37 97.3 36 ......................G.............. GCCACGTCGTGGTGCGTGTCGGTGGGGTAGGGGGCG 188483 37 97.3 36 .......C............................. GTCCGTTCTGTCGGGCTCGCGTTCCGGCGGGCGGTT 188410 37 97.3 35 .......C............................. GTCGTCAGCACCATCGGCTCCACGCCCGACGAACC 188338 37 97.3 33 ......................G.............. CTGCACGACGCGGCCACCTCCGCGGACCACCAA 188268 37 81.1 35 C.C.TG.C..............G..........T... CGTGACGTCGCGCTGCGGGCCGCCGCGGACGGCAC 188196 37 97.3 0 ..................A.................. | ========== ====== ====== ====== ===================================== ======================================= ================== 34 37 97.2 36 GTGGCCGTCGCCCTTCGGGACGACGGAGGATCGCAAC # Left flank : GGAGCCCCTTCCCGGGCTTTCACCGGCTTACCGTTTTGAGCAGCGAAAACTCCCTCGGAAGTCCCTCGGACAGCGCTGAAAGTCCCTGAAAAGTCCCTGACGCGGTGGCGGTGGCGGCTCCTCTGAGCTGGACTTTCAGGGCCTGGGGCGCGAGGCTGCTGAGCCTCGGGTCTGCCGAAGCCCGGCCGAAGCGTGAGGAGAGCGCAGGCGGAGGGCGGATCCGTAGCTGCGGCTTCGGGTGATGATTCCGTTACGTCCCTGAAGGTGCGCCGACGGCCTGTGGCGAGGGCCTGTCCCTCGTAAGGTAGCCGCGTCACCCCTATGGCCCCCCGGTGTGAGGGAGAGGTAGTCCGCACCGGCCCGGACGCTGCTTCGGAACCCCAAGCATGCACGGGACACGCGGGTCCTACCGAAGCAGAACGTCCGAATGATGCCGTCTTGATCACCGAAGACTCGCCAGTCACCGCGGCTCGGGTCCATGATTGTGCTGCTCAAATGCC # Right flank : GACTAGGCTGACGGTCACTCCGGGCTCGGCCACGCGTGGCCGCTGCTCTCTGGGAGATCTCAACCCCATGCTGGAACCCCACGAGATCGGCTGCGCAATGGTGGCCGCTGTTCGTGGTGATCAGCTCTCCTGACGGGCATATGATCGCTGCGTGATTCGCGCTGTGGTCTTCGACGTTGGTGAGTGTCTGGTGGACGAGACCCGCGAGTACGGGACGTGGGCCGACTGGCTGGGGGTTCCCCGGCACACCTTCGCCGCGGTTTTCGGTGCCGTGATCGCGCGTGGCCAGGATTACCGGGAGACGTTCCAGGTTCTCCGGCCCGGGTTCGACCTGTCGGTGGAACGCGAGGCGCGAGCGGCGGCCGGGCAGCCGGAGTATTTCGGCGAGGAGGACCTCTATCCCGACGTCCGGCCTGCCCTGGCCGCGTTGCGTGCTGCCGGGCTGTGGCTGGGCATCGCGGGGAATCAAACGGTGCGGGCCGGCCACCTGCTGCGGGAGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCCGTCGCCCTTCGGGACGACGGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTTCGGGACGACCGAGGATCGCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.80,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [26-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //