Array 1 53820-49842 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOGJ010000001.1 Ruminococcus bicirculans strain NSJ-14 A2757_ctg001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 53819 32 100.0 34 ................................ TTAAAAAAATTAAGCACATAGTCCAAAGCTGAAC 53753 32 100.0 34 ................................ ATGATACTGGTATTCACTGTTACCCCTTGCAACA 53687 32 100.0 35 ................................ CTGCTTCTTTTGATAGTTGCTAATGTCATTTACAC 53620 32 100.0 34 ................................ GTTAGTCTTGCTATGCACTTCGTGAGCGGTAAAA 53554 32 100.0 33 ................................ ATTCATATCTATTTGTCAAAATCTCCTGTTGAG 53489 32 100.0 34 ................................ ATTCATGAATAAGTTATATTTTTTGAGTGGTTTG 53423 32 100.0 35 ................................ TGACAGCTTCGAGCGTAAACCACTTGCTCCACTTC 53356 32 100.0 34 ................................ AGCGTGAAGTTCCTGACGGATAGACAGCTTTATC 53290 32 100.0 33 ................................ TGTCTTTCGCTAGCATTTTCGCAAGACATTCTC 53225 32 100.0 34 ................................ GTTCCAGAATGGACGGCAATCAGCATAGTAATAA 53159 32 100.0 35 ................................ CACTGATGTTCTCGACATTTCCCTTTACGATAGCC 53092 32 100.0 33 ................................ GATACCGTTTCCACCCGTTGTTACAGTTTCATC 53027 32 100.0 33 ................................ CGCCGTTGGAGTATGTGAGATATAGGACATCTC 52962 32 100.0 33 ................................ TTTCGCGTAAGCGAGAACCTTACACCGCATAGC 52897 32 100.0 33 ................................ GCTAAAGATAAAGAATAACCCCCGTAGGGGGTT 52832 32 100.0 33 ................................ TTTCATACTCTTTTCCTACCGCAGAAACCGCCA 52767 32 100.0 33 ................................ TTTCACGTACTGGCTATAGCCTGTATGCCATGT 52702 32 100.0 33 ................................ TTGTCGTTAACATCACCGACAGACGTTGCTTCC 52637 32 100.0 33 ................................ TTCAAGTGGGCAACGTTCAGCTCAGGCAAGTAT 52572 32 100.0 35 ................................ GCAGTTGTCTGCAAAGGATTTGAGCAGGCGCAGGG 52505 32 100.0 34 ................................ TGTTACGATCCAGTCAATAATGTATTCACCCTGT 52439 32 100.0 34 ................................ TGACGTAGACGGAACTGATGTGTGGCTAACACAT 52373 32 100.0 33 ................................ GCCTGTCTGATCGTCAATCTGAAGATTAAGGTC 52308 32 100.0 34 ................................ CCCGCCCCTCAACGTTGACGATTGTGCCGAGATT 52242 32 100.0 33 ................................ ATGATGATAGTATACCGCCTATTCAGACGTGGC 52177 32 100.0 34 ................................ TCTGTAGCTAGTCATAGTTCTTTACCTCCTCTAT 52111 32 100.0 33 ................................ ACCATAAGAGATACCGACATAGTAAAAATCAAG 52046 32 100.0 33 ................................ GTCCCACTCGTTGGCTATTTTGCAGTTGTCTGC 51981 32 100.0 35 ................................ TCTCAACGAAGATGTGCTAGAGGAGCATTTCGACG 51914 32 100.0 34 ................................ TCTTCAGCTCTTCAAGCTTGGTCTTCCACTGCTT 51848 32 100.0 34 ................................ TCTTATATTGCTCGTTGATATCTTTCTCGTTTCT 51782 32 100.0 34 ................................ TATCCTGTCTATCTCGGTGACTTTGGGCTTGCGA 51716 32 100.0 34 ................................ TGATTGCTACTGTTGTCGCCACTACATAAGAGAC 51650 32 100.0 33 ................................ CTTCTTCCCTGGTTGCAAGATACGCTATCACAT 51585 32 100.0 35 ................................ TATCACCTTGCCGTCCTCTATGCGATATGTAACGC 51518 32 100.0 33 ................................ AGGCAGGCGGCTGATGACCTTGAGGGGTGAGCT 51453 32 100.0 33 ................................ TCATTTGTGATTATAGCCCCGTGGCCTGTAGAA 51388 32 100.0 34 ................................ ACGATATGGATTTCTCTCACAAGATACGCACGGC 51322 32 100.0 34 ................................ TAGATCGGAGTAGCAGCTGTTGTCGGGATATATG 51256 32 100.0 33 ................................ TTCTTGAAAATCACACGCCGGCAAGAGCTATAG 51191 32 100.0 34 ................................ TGGCAAGACTTATCCCTGCAAACTTCACTGACAA 51125 32 100.0 35 ................................ TGTTTCTGACGATTTGAACAGTAATGGTACTGTTG 51058 32 100.0 34 ................................ ATGGCTGGGCGTGTTTTGACTGTGCCGATAAGTG 50992 32 100.0 35 ................................ TGTAATCTCTTTAAGGACAGTATAACATGAAAACG 50925 32 100.0 33 ................................ CACTTATGCTGTTTGTTGCCTGCTAGTTCTCAT 50860 32 100.0 37 ................................ ATGCTTAATAGCGGTTTCAGTATGAAAGAGGTTTCGG 50791 32 100.0 34 ................................ TGCCTGCTGCTGTTTCGATAGCATTAAACCTATC 50725 32 100.0 33 ................................ TCGTGACCTTTTCCAGCAATACACGCATTATGA 50660 32 100.0 33 ................................ TCTAGCATAATATATAGCCTCCGTGCTGTCGAA 50595 32 100.0 33 ................................ CAACCACGGCATAATAAAAAGTATGGTGAATAG 50530 32 100.0 33 ................................ ATATTGACAATAAGTTTCACTAAATAAAAATTC 50465 32 100.0 33 ................................ ACGTAATTCATTCAGATCAGAAGTAACACACAT 50400 32 100.0 33 ................................ ATTCGGAACATCAGGAGAAGAAGACGGAGTTGT 50335 32 100.0 36 ................................ CGTATAAAATTTTGTATAAAATTTATTATTCATAAT 50267 32 100.0 34 ................................ CTTCGAAGCACACAAGCGCCTACATCTTGACGAT 50201 32 100.0 34 ................................ ACACCTTGATGACACTGAGGACGGTGACCTCACG 50135 32 100.0 33 ................................ ACGTAATTCATTCAGATCAGAAGTAACACACAT 50070 32 100.0 34 ................................ ATGATGATTTTGATGGTGTTCTTGATCTCTCTCT 50004 32 100.0 33 ................................ TGCGGTGCTGAATCCGTGATAAATGCGGTCTAC 49939 32 100.0 34 ................................ TTCCAACGTGTATTCAATCGTGCCACTTTTGATT 49873 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 61 32 100.0 34 GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Left flank : GGCGAGCTAGATGAGTACCCGAACTATTTGCTGAAATAGAGGTGATATAAATGATGACCTTAGTAAGCTATGATGTATCAACAACAGATAATAAGGGTAAAACAAGGCTGAGAAAAGTGTCGAAAGAGTGTCAAAATTATGGTCAGCGAGTGCAGAACAGCGTGTTTGAAATAGACGTAGACTATGGCACTTTTCTGAAAGTGAAAGATAAACTTCTGAAAATAATAGACCCAAAGCATGATAGTCTGCGGATATATTACTTAGGCAACAATTGGAAGCATAGAATAGAACACTACGGCACCAAAGAGACCTATGACCCCGAGGGCGTCCTAATATTTTGACCAGCGTACCCCAAGTGATCCACAAATCCCTAGTAAGTTCGCATGAAAATGCCAGGCTATATGTGAATGAATAGTGAACAAAATCAAACCGATACCCATTAAATAAAACAATAAGTCCGCATCACGTTGAGCAAGCACCAGATATACACAACATCAAGT # Right flank : TTGCCGTGGGTTCAAGTCCCGTCACCTCGACCATAACTGGACACCAATTTTGATACAATGCGTATCTTGATTGGTGTCCAGTTTCTTTTTGCAAAGTCCTTGATTCGCAAGGCTTTTTGATACTTTTTAACGATATAAGGCTTCGTGGCGTTCCGGAAACGGTCGCTGCGGAGCCTTTTGCGTTTTCTCCCATAACACTTTTTAACGAAAGGTCGAGGGGTGTGCAGATTTTAGTCGGGGGTGTGCATTTTCGGCAAAAAGGGTGTGCACATTTTAATTATTCCTCAAGAGCGCAAGAGAAAGGCCGCAAAACCTGTTCGCCCAAAATACGAACGACCTTGCGACCTTGTATCTTATTCTCCGACCTTGACCTCTGTGCCGTTCTTGAAAACGAAGGTAATCGCACCGTTCCTGTGGACGATTGCCTTCTCGACCATCACCGTCCAGATGGTGGCGCTCCACTCACGCAGCACCACCGGCTGTTTTTTGAGGGTGCGGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCACGCTCCACGTGAGCGTGTGAGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.30,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 10066-9768 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOGJ010000008.1 Ruminococcus bicirculans strain NSJ-14 A2757_ctg008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 10065 36 97.2 29 ..........A......................... CCAACATTTTCTGCATTGTCATGAACTCG 10000 36 100.0 30 .................................... TCATTTCAGGCGTGCTCAATGCTTTTTTCA 9934 36 91.7 30 ......T........A......T............. ATAGACTGTGAACTCTGCGCCTGCAAGAGC 9868 36 100.0 30 .................................... TCACAGCGGTGCTGATACTCAGCGGATTTA 9802 35 86.1 0 ............................-..GGC.A | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 95.0 30 CTACTACACTGGTGCGAATTTGCACTAGTCTAAAAC # Left flank : GCCCTCACGCTTGGGCAGAAATGTGCTTGGGATCATGCTCATTTTTATCACCTCTTGTATCCATTATATCACAAATGTACTTTTTGTCAATATCATAGAAAATTATTTTGCTGGAATTGTGATATAAATGCCGTAAAAACGTGATAAATGTGCAAAAACATAGATAAAAAAGTTTTTGAAAATTACACTTTTGCTGACGATGATAAGGTGGTATAATGTATACAGAACAAAGGACAGAAGGTGATAAAAATGGGAAAGACGATCCTTACGGCTATCATTGTAGCTGTACTTGACTGTGCTATCGCAGCTGTCAAGGAGATTTGGGAATGAGATGAAATAACAACAGATGGGAGGTGATGAAAATGCTTTATGTAAAACAGCCACTTTCTATTGACATTTGTGTCTGAAAATGGTATAATATACACATTAAAGCAAAGCGTCGATAAAATAAGTTTGGTGTTTTATCACAGAATATCATTGATTATTTTGTCAACTTTGAC # Right flank : GGTTTAACATCAAAACCAACAAATAAAAAAATCCCTTAACGCTCAATGCGCTAAGGGATAACTAATATAAGGAGTAATATTTATGGCAAAAAAGAATAAAATGAAGCCTAGAGAGCTGCGTGAGGCTCAGAAAAAAGCCAGACAGCTCAAAGCGGCTGAGATAAATAATAACGCTGCTCCTGCGATCGCTGCCATGCCTGCTGCAGAGGTCATTGCACCTGCGGCAGAGAAGAAAAAATCCTCCGTAAAGGCGGCAGGAATGAAGTCTATTCTTGTCAGCGAAAATAAAATGTACATAACCTCTTTCGGCAAGGGCAATTCTGCTGTGCTTGAATATGAGGTGGATAAGGTGGATAATGATGACTACAACAAAACTCAGCTTTCCTCTAAGGGCAGCAGCAATATCGAGCTTCATGGTGTAAACGAAGTAAACATCACTTTTTCAAGCAAGCATGGCTTTGAGAGCGGAGTGGAGATAAGTACTTCAAACCCTACTCACA # Questionable array : NO Score: 2.73 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTACTACACTGGTGCGAATTTGCACTAGTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //