Array 1 952096-952794 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043773.1 Salmonella enterica strain QH chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 952096 29 100.0 32 ............................. CGAAAATGCTTTGTATTGTCCATTGGCACACC 952157 29 100.0 32 ............................. CTGTAATGCCTGAGCATTGCAGCCGGTTAGAT 952218 29 100.0 32 ............................. GCCATCGACGGACAAGAAAACCCACCGGAAGA 952279 29 100.0 32 ............................. TAATAACGCCAGCTCACATTGGCACTGGCGCG 952340 29 100.0 32 ............................. AAATTAGTAGTCATTTTGAAACCCTTAGTGGT 952401 29 100.0 32 ............................. GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 952462 29 100.0 32 ............................. ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 952523 29 96.6 32 ...........A................. GCCCGCCTGTCGCTGTACGCCGGGGCGGCATA 952584 29 96.6 32 ...........................T. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 952645 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 952706 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 952767 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGTATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACATTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTTGACTAGTCCTGATATAGGTTGACAGTTTTTTGTCTGTAAAACGCCTGATGAACATCATCGGGCGTTTTGTATTTCAGGGCCTGGTGTGGCCGTTCATGGTTATAAATTGCCACGGACTCTTTTACTATTTCCCGCGCTTGCTCCAGGTCTGCAGGACGCGAGAGTAAAAACTCATTTTTCAGTATCCCGTTTATTCTCTCAGCCAGCGCATTCTGGTAGCAGTCGTAACCATCGGTCATTGAACAGGTTATTCCGTTTCGCTCATGAACTGACTGATAAAGTACCGAACAGTATTGCAGTCCTCTGTCAGAGTGATGTACCAGCGGACCTGTCGTTTTTCTCCGCCTCAGAGCCTGCCTGAACGCCTTTACCACATTTTCTGTCTGCAGGTTTTCCCCGACATGGTAACCCACGATTTTTCTGGAGCAGGCATCGGTGATCAGACTCAGAT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 970235-970813 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043773.1 Salmonella enterica strain QH chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 970235 29 96.6 32 ...........................T. CTGCATATTCACGCCTCACTCCAGCACACTGG 970296 29 100.0 32 ............................. GTTGGACACTTCCTCCTGAAGCTCAGGTTGGA 970357 29 100.0 32 ............................. CTATTTTCCTCGCATCTACAGGCAGGGTGAAA 970418 29 100.0 32 ............................. TCGGATAACGTTTCGTCAGCGCGTATCATGCC 970479 29 100.0 32 ............................. CTGGGAAGATTGGGCGCTTTCAATATCTTCCA 970540 29 96.6 32 .............C............... ATATTCAAACGGCGCGGGGGGAGACATCCGGA 970601 29 96.6 32 .............C............... GTTACAGTATCATGTAAAACTGTATAAAAACA 970662 29 93.1 32 ...C.........C............... ATTGAAAAGCTGGCGATAAACAAGGCCCGCCA 970723 29 96.6 32 .............C............... AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 970784 29 89.7 0 A...........TC............... | A [970810] ========== ====== ====== ====== ============================= ================================ ================== 10 29 96.9 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //