Array 1 6189003-6193133 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048406.1 Mesorhizobium sp. AA22 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =============================================================================================== ================== 6189003 32 75.0 35 TGTCG...........A..........A..T. GATTCATTGCCCCACACACCCCAGCCCGGGCGCGC 6189070 31 87.5 32 ....T..T..........-...T......... GCTGGTCAAAGGCGCGCTGCGCATGGGTTACC 6189134 31 96.9 35 .......-........................ TACCGTCCTGAAGTCGATGCGGCCTTCGATGAGGA 6189200 32 93.8 34 .......T.......A................ TTCACCGGCGTGCCGAGCCATGGCAGGCCGATCT 6189266 32 93.8 33 ........C...T................... ACTTCCTCGTTGACATGGGTGTGATCGAACTCG C [6189281] 6189332 32 100.0 33 ................................ GGTTCGAAGTCGCCGGCATTGACCACTTCGCGC G [6189346] 6189398 32 90.6 34 .........G........A.....G....... CTCCTGAAGGAACGCAAGCCGCTCCGTCCGCTCT 6189464 30 90.6 33 .......-..........-..A.......... GCCTGCATCTTCTTCGTCATGACCTTGGCGGCT 6189527 32 93.8 33 ...........GA................... CGCGTCATCGGAAAGCGCTACGGAAACTTGCTT 6189592 31 93.8 35 ..............-T................ ACATGACCATCCAGCAATCGGCCACAGCGCTTATC 6189658 30 87.5 35 .......A..C......--............. TGGCCGATCGGCTGCAACCATGAGGGCCAGATCGA 6189723 30 93.8 34 .........................-.-.... GCATGTGGGCGGCCGGTGTGACGGGAGAAAGCAC 6189787 32 96.9 34 ............A................... GATTGCGGTGGGCGCCAATGGCGAGGAGCCGGAA 6189853 31 93.8 29 ..............-...A............. GCCCCTGCGTGGTGGGCCTCATCCGGCAC 6189913 31 71.9 32 ..A.AGT.G.C.-.TT................ TAAAGACCCTTACGCCGCCATCCTCGCGCCTT 6189976 31 90.6 35 .......A.T...............-...... TTGATGCGGATGTATTCGTCGCCGTCGATGTTGTC 6190042 32 100.0 34 ................................ CGCTACCGTGGCGCGTCCATCTATAACCCGCACC 6190108 31 84.4 34 .......-....A.....A....A.....T.. CACGACCAGGACCTGCGTGACACGGCCGTGACCT 6190173 32 96.9 95 ............A................... CGTTGAACTTCCATCCTATTAGCGCAGGGTGTGGATCGTCCCTCTCACGGGGGATCGAAAGTCCAGCGCCTGCGAATACTCGAACGCAGTCAGAA 6190300 32 90.6 21 ...........GA...A............... ATGTTCGCTTCCAAGAAGGCT Deletion [6190353] 6190353 32 68.8 26 ........G..G...T..ATCGAA.C...... CGAGCCGGAGATGAAGGCCGAGCAAC Deletion [6190411] 6190411 32 90.6 35 .C...T......A................... GTCGTCACGACGCAGGGACCCCTTCGAATGTGTCA GC [6190418] 6190480 32 96.9 34 .............G.................. CACGAGCGATGGCGCTTTGTGACACAGGCAAGGT 6190546 32 100.0 35 ................................ ATGCTCAACGTCGCGCCGTTCTTCATTGGGCGACA 6190613 31 93.8 34 .......-....A................... TTCATGGATGAGACCGAAGCCGCGACGATCAAGA 6190678 30 90.6 34 .......-....A.....-............. TGCTGCTCGGCCGGCATGGCGAGATCCATTTCGA 6190742 31 87.5 31 .......-....A..A..........A..... GGGTCTTTGTCGTAGGTATCGAGCGCAATGC 6190804 32 96.9 33 ............A................... AGATGGAGGCTGTAGGAATGCCGCGCCACCTTG C [6190812] 6190870 31 93.8 34 ............A-.................. ATCGCCGAGGCGCAAGTGTTCCTCCCGACCGGTG 6190935 27 78.1 34 ..........-----A.........C...... TTGCCGTCTACGCCGATCTCGCGCACCAGGCCGC 6190996 32 84.4 65 ........CAC.A..T................ CATCGGAGGGATAAACGCCAGCCTCGCCCCATCGAAGCTACGATTTCGCAGTCCCACCATCCAAG 6191093 31 65.6 34 .CTA.GGG..G.C.C...-............A CCACATAACCCGTTCGAACGCTGCATTGTGCGCA 6191158 32 93.8 35 ...A........A................... TCCTTCGGTGGGCAGGTTTTGCTGGCGTGGAAAAG 6191225 30 87.5 34 .......-....A.....-............G GCCTTCGACGCCTTCAAGCTGCGCGTCATGCTGA 6191289 32 96.9 19 ............A................... CTTCCGGAACCGTTTACTA G [6191308] Deletion [6191340] 6191341 32 71.9 35 CG....GTGGG....C.......A........ GTCGATCGGAGCTATCCGTTTGGCAAGCCTGACAT T [6191354] 6191409 32 90.6 77 .C..........A..A................ GTTGTGGAGCACGTCAACGGCAAGCGCGCGACGGTCGCCCCACAGGATTTTTCTCGACACCGATATCGAGGATGTCT 6191518 32 53.1 24 ........GTGGATC.AAA..ATA.A..G... GACGGGCAGCCCCTTCTACGGCAA Deletion [6191574] 6191574 32 96.9 34 A............................... ATCAAGCCGCAAGAGCCGATGCTGGTCGAAACAG 6191640 32 100.0 34 ................................ TCGTGCTGCAGCGGTTACGACTGCCGCGAGGTGT 6191706 32 100.0 35 ................................ AATCCGTTGACCGCCATCCGCAACGGTGGCTCGGC 6191773 32 93.8 35 ...C....C....................... CGTTAGGCGCTGAGTACCCAGTCGCTACGCGCCTG 6191840 32 96.9 34 ........................G....... TGCCTTGCGCCGTTCCGCTCGTGCGGCATATGCT 6191906 32 93.8 19 .......G.......................T CAGAACCACTACACCGAAA G [6191920] Deletion [6191957] 6191958 32 71.9 14 AG...ATG.AC.............G.G..... CAATAAATGCCGGC Deletion [6192004] 6192004 32 75.0 35 CA....TGC.A.....TC.............. TTTCCACCGCCGAAGCCGCCGCCGCCGAAGCCCTT ACGAA [6192017] 6192076 31 96.9 33 .......-........................ CTCAAGGAGTGGCTGCCGCACGCGCATTTCACC G [6192095] 6192142 32 93.8 20 ...............C..A............. GCTTTGGGAGTGAATGATAA Deletion [6192194] 6192194 32 68.8 33 .....GGTGGA....TC.C.........T... CAGTGCTCCTTGTGCGAGGCGAGGCAGATCACC A,G [6192196,6192208] 6192262 32 96.9 35 ........................T....... AACGGCATCAACTCGGCAATTGACTGGATTTTCGT 6192329 31 96.9 35 ..............-................. TACGTCCGCAATGACAAGGGCATCCTGCCCTTCGA 6192395 31 90.6 34 ..............-A.............G.. CACGAACGAGGCTTGGGCATGGCTGCGGCGCCTG 6192460 32 100.0 57 ................................ TCACGATGGACGATGACGCCCTGATCGCGCTGGAAAGTCGCCCCTCCTCGCGGTCGT 6192549 31 93.8 34 ......T.......-................. AGCACCAGGTCGCGGCCGCTCTTGCCCGGCCGGT 6192614 32 93.8 33 .......A....A................... TTCATGGCGTTGCTTTGCCATACTCCAGGCGCG 6192679 32 84.4 16 .....G......AT...............GC. AAAGCGGAAGGAAATT Deletion [6192727] 6192727 32 68.8 24 .C..G.GGGG....AAA.C............. CGCGTAGGCCCGATGGCAAGATCA TCGCCC [6192745] Deletion [6192783] 6192789 32 65.6 12 AAA.TT.TCG....CCC............... TTATTTAACCGT Deletion [6192833] 6192833 32 78.1 32 .CG..TTT..CG.................... GTTGCGCTCCTCCAATTCCTGCAGGCGCCGCT ATCCGGAAGGT [6192846] 6192910 32 93.8 33 ..........A.A................... CTCCTGAAGGAACGCAAGCCGCTCCGTCCGCTC 6192975 32 87.5 27 ........G.A.A.............T..... TGGTACGACCCGGAGGATCCGGCATTC G [6192994] Deletion [6193034] 6193035 32 71.9 33 T..A..T.G.C.CTC.......T......... TCGTTCTAAACCGGAACGGTACCAATTGAGATC GG [6193041] 6193102 32 93.8 0 ..........A.A................... | ========== ====== ====== ====== ================================ =============================================================================================== ================== 63 32 88.4 34 GTCGCCCCTCTCGCGGGGGCGTGGATCGAAAC # Left flank : CCGCCGCGCGCGGAGAAATGGCAAGCCGCAAGCTCGTCGTGTTCAAACACGCCAATGCGCTCGGCAACGCACCGGCCCATGCGCTCTTCGATCGCCTAAGGATTGGTCGCAACATTGACGGCCTCTTCCGTGATGTCCACGATTCCGGCATCGACAACTATCCACCGGCTCGGAAATACAGCGATTACAAAATTGAGATCGATCGTGACGGCATGCCGGAAGGCGTGGAGATTATCGAGCGTCTGTGAGCATGGCGCCAGGCGAAACTCCGGTCAGCCAACCCGACGAACGGGATGCCGATCCACCCTCATCATCCGAATCCATTGCAAGCGCGACAGCGCGAACGTGGAGCGTGCCGGAAAATTCCGACGGAGTCGCACCGGCGCTGGTTCTTTGAAATCGTGAAACTATGTGCGTCAAGCCGGGTTTTCGCCCTCCTGCTCAGTCGTGCCACCATGTTCGCGATCTAGCTCATCTTTCTTCAATCATCGCTGAGGCAC # Right flank : CTTGCCGCGCGTGATGCCGGAAACGATCAGCGGGGTCGCCCCGGGGCGCTCTGTCCGCGCCTAAGGGCAGATCACCGTCAACGGCGACCGGCGCCTTCATGCCGAGGCGCTTCGCGGCTTCTCGAAATCGGTAGCTAAAGTTGGAGTAGGATTGATCCGTCCACCGCATATCAGCTCATTGGCCAGACGATCATGAGCATCGGCACGGCAACAATGACGACGAGGAACGACAGCGGCAGTCCCAGGCGTGGATAGTCGCTGAAACGGTAGCCGCCCGGCCCCATGACGAGCGTGTTGCACTGGTGGCCGATCGGGGTGAGAAAATCGCAGCCGGCGCCAATGGCGACTGCCATCAGAAATGCTTCCGGCCTGTAGCCGAGATCGCCAGCAAACGCGGCGGCGATGGGCGCCATGACCAGAACGGTTGCGGCATTGTTGAGGAACGGCGTCACGGCCATGGCGGCGACAAGGATGAGCATCAATGCGCCGGGCGCCGGAAG # Questionable array : NO Score: 4.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.42, 5:0, 6:0.25, 7:-0.30, 8:1, 9:0.12, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCTCTCGCGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCTCGCGCAGGGGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [73-107] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //